Wall clock time and date at job start Mon Mar 30 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46930 * 2 1 4 4 H 1.08994 * 109.47390 * 55.00212 * 3 2 1 5 5 N 1.46497 * 109.47035 * 294.99657 * 3 2 1 6 6 C 1.34779 * 119.99999 * 85.00252 * 5 3 2 7 7 O 1.21283 * 119.99585 * 0.02562 * 6 5 3 8 8 C 1.50699 * 120.00366 * 180.02562 * 6 5 3 9 9 H 1.08998 * 109.46949 * 59.99452 * 8 6 5 10 10 C 1.53007 * 109.47040 * 300.00135 * 8 6 5 11 11 C 1.50695 * 109.47383 * 180.02562 * 8 6 5 12 12 H 1.08001 * 120.00119 * 35.10169 * 11 8 6 13 13 C 1.37877 * 120.00250 * 215.10626 * 11 8 6 14 14 N 1.31507 * 120.00706 * 184.90733 * 13 11 8 15 15 Si 1.86807 * 119.99617 * 4.90415 * 13 11 8 16 16 H 1.48503 * 109.47044 * 84.82552 * 15 13 11 17 17 H 1.48503 * 109.47110 * 204.82178 * 15 13 11 18 18 H 1.48499 * 109.47347 * 324.82491 * 15 13 11 19 19 C 1.50705 * 109.46894 * 175.00016 * 3 2 1 20 20 C 1.38650 * 120.78865 * 79.71893 * 19 3 2 21 21 C 1.38208 * 119.16155 * 179.75691 * 20 19 3 22 22 N 1.31869 * 120.75925 * 0.52672 * 21 20 19 23 23 C 1.31871 * 121.73024 * 359.74086 * 22 21 20 24 24 C 1.38202 * 120.76047 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47173 * 300.00179 * 1 2 3 27 27 H 1.08994 * 109.47525 * 60.00022 * 1 2 3 28 28 H 1.09000 * 109.47173 * 239.99821 * 2 1 3 29 29 H 1.09003 * 109.46988 * 119.99711 * 2 1 3 30 30 H 0.96999 * 120.00762 * 265.00481 * 5 3 2 31 31 H 1.08997 * 109.46947 * 175.07453 * 10 8 6 32 32 H 1.08995 * 109.46913 * 55.06930 * 10 8 6 33 33 H 1.08998 * 109.46708 * 295.07144 * 10 8 6 34 34 H 0.96994 * 120.00587 * 179.97438 * 14 13 11 35 35 H 1.08004 * 120.42256 * 359.97438 * 20 19 3 36 36 H 1.07994 * 119.61950 * 180.25136 * 21 20 19 37 37 H 1.08001 * 119.61467 * 179.97438 * 23 22 21 38 38 H 1.08003 * 120.41387 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0974 -1.2518 6 6 0.4351 2.6643 -1.3670 7 8 -0.3393 2.6327 -0.4341 8 6 0.0362 3.3376 -2.6549 9 1 0.0673 2.6128 -3.4685 10 6 1.0067 4.4820 -2.9541 11 6 -1.3612 3.8861 -2.5232 12 1 -1.6982 4.2839 -1.5773 13 6 -2.2095 3.8802 -3.6101 14 7 -3.3937 4.4454 -3.5232 15 14 -1.6766 3.0692 -5.2063 16 1 -1.9699 1.6147 -5.1446 17 1 -2.4177 3.6758 -6.3412 18 1 -0.2186 3.2723 -5.4021 19 6 3.5419 1.4443 0.1238 20 6 4.3453 1.1986 -0.9792 21 6 5.7190 1.2134 -0.8285 22 7 6.2659 1.4471 0.3485 23 6 5.5330 1.6794 1.4200 24 6 4.1531 1.6862 1.3446 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2718 2.1231 -1.9978 31 1 0.7717 4.9125 -3.9275 32 1 2.0274 4.0998 -2.9626 33 1 0.9122 5.2488 -2.1852 34 1 -3.9904 4.4415 -4.2879 35 1 3.9032 1.0017 -1.9447 36 1 6.3518 1.0270 -1.6835 37 1 6.0169 1.8664 2.3672 38 1 3.5583 1.8767 2.2257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597291069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:53 Heat of formation + Delta-G solvation = -13.171207 kcal Electronic energy + Delta-G solvation = -19794.690762 eV Core-core repulsion = 16829.757555 eV Total energy + Delta-G solvation = -2964.933207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56360 -39.08880 -35.94862 -33.70081 -32.25136 -31.97032 -31.36886 -30.83140 -26.61969 -25.27479 -23.74518 -22.75724 -22.65782 -20.55365 -19.43809 -17.30771 -17.08741 -16.50271 -15.79385 -15.51266 -15.31566 -14.90882 -14.27158 -13.96146 -13.79674 -13.56185 -13.50461 -12.73789 -12.64891 -12.39391 -12.20108 -11.73473 -11.56627 -11.36189 -11.14026 -11.11693 -10.78879 -10.65006 -10.29121 -9.85290 -9.75565 -9.65327 -9.32828 -9.19535 -8.70619 -8.58860 -8.49920 -6.08688 -4.08037 0.96160 1.05576 3.21934 3.28169 3.31704 3.55360 3.62059 3.77574 4.28672 4.35991 4.37968 4.65317 4.91006 4.98963 5.16947 5.20281 5.23612 5.40909 5.51009 5.57756 5.71160 5.82619 5.92450 5.97597 6.12410 6.16467 6.19750 6.34897 6.40454 6.50180 6.51944 6.77616 6.79979 6.95357 7.15181 7.52949 7.79131 8.09805 8.51770 9.06891 9.11821 9.50917 11.04584 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027811 B = 0.005242 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.552360 B = 5340.511549 C = 5695.269174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.181 3.819 4 H 0.098 0.902 5 N -0.743 5.743 6 C 0.521 3.479 7 O -0.521 6.521 8 C -0.004 4.004 9 H 0.053 0.947 10 C -0.134 4.134 11 C -0.494 4.494 12 H 0.086 0.914 13 C 0.072 3.928 14 N -0.894 5.894 15 Si 0.870 3.130 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.037 4.037 20 C -0.167 4.167 21 C 0.100 3.900 22 N -0.491 5.491 23 C 0.099 3.901 24 C -0.163 4.163 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.393 0.607 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.265 0.735 35 H 0.135 0.865 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.635 -8.160 4.962 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.075 3.925 4 H 0.116 0.884 5 N -0.399 5.399 6 C 0.309 3.691 7 O -0.394 6.394 8 C -0.026 4.026 9 H 0.071 0.929 10 C -0.192 4.192 11 C -0.532 4.532 12 H 0.104 0.896 13 C -0.130 4.130 14 N -0.532 5.532 15 Si 0.697 3.303 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.046 4.046 20 C -0.187 4.187 21 C -0.056 4.056 22 N -0.200 5.200 23 C -0.058 4.058 24 C -0.184 4.184 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.744 -8.114 5.622 19.438 hybrid contribution -0.440 -0.458 -1.389 1.527 sum 16.305 -8.572 4.233 18.901 Atomic orbital electron populations 1.21829 0.93896 1.00482 1.04216 1.21919 0.97714 0.94928 1.01721 1.19825 0.87948 0.94423 0.90263 0.88448 1.46486 1.18289 1.60107 1.15013 1.21730 0.79331 0.76471 0.91519 1.90593 1.50652 1.57406 1.40770 1.19351 0.98105 0.94389 0.90773 0.92882 1.21954 0.95819 0.99574 1.01833 1.20728 0.93589 1.39571 0.99311 0.89593 1.25020 0.94784 0.94973 0.98187 1.69874 1.08430 1.43754 1.31149 0.86985 0.79068 0.80243 0.83979 1.20123 1.21257 1.18990 1.20532 0.96123 0.94356 0.93585 1.21993 0.95019 1.02011 0.99700 1.22738 0.92637 0.95054 0.95215 1.67670 1.41136 1.11735 0.99438 1.22743 0.90680 0.95139 0.97195 1.22055 0.96327 1.01690 0.98301 0.93789 0.92032 0.91290 0.91980 0.91741 0.77271 0.92711 0.95622 0.92921 0.92535 0.84762 0.82732 0.82724 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.52 37.16 0.32 -2.00 16 2 C -0.12 -1.60 5.59 -26.73 -0.15 -1.75 16 3 C 0.18 2.46 2.49 -69.08 -0.17 2.28 16 4 H 0.10 1.48 7.48 -51.93 -0.39 1.10 16 5 N -0.74 -11.58 4.85 -54.93 -0.27 -11.85 16 6 C 0.52 10.80 5.72 -10.99 -0.06 10.74 16 7 O -0.52 -12.55 12.91 5.55 0.07 -12.48 16 8 C 0.00 -0.10 2.30 -92.92 -0.21 -0.31 16 9 H 0.05 1.16 5.29 -51.93 -0.27 0.89 16 10 C -0.13 -2.61 9.12 37.16 0.34 -2.28 16 11 C -0.49 -13.84 8.36 -34.44 -0.29 -14.13 16 12 H 0.09 2.75 7.61 -52.49 -0.40 2.35 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 15 Si 0.87 20.58 26.99 -169.99 -4.59 15.99 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -5.77 6.82 56.52 0.39 -5.38 16 19 C -0.04 -0.43 4.98 -104.32 -0.52 -0.95 16 20 C -0.17 -1.73 9.15 -39.44 -0.36 -2.09 16 21 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 22 N -0.49 -5.66 10.36 -13.25 -0.14 -5.79 16 23 C 0.10 1.00 11.18 -17.55 -0.20 0.81 16 24 C -0.16 -1.70 9.78 -39.44 -0.39 -2.08 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 27 H 0.07 1.31 5.65 -51.93 -0.29 1.02 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.39 5.21 6.33 -40.82 -0.26 4.95 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.02 0.40 7.43 -51.93 -0.39 0.01 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.13 1.18 7.03 -52.48 -0.37 0.82 16 36 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 311.79 15.07 4.70 4.70 Total: -1.00 -32.66 311.79 -6.74 -39.40 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.31 Total: 5.44 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.99 Total: -8.97 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.37 Total: -44.08 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.59 Total: 15.99 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.66 -6.74 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597291069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.232 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds