Wall clock time and date at job start Mon Mar 30 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46930 * 2 1 4 4 H 1.08994 * 109.47390 * 55.00212 * 3 2 1 5 5 N 1.46497 * 109.47035 * 294.99657 * 3 2 1 6 6 C 1.34779 * 119.99999 * 85.00252 * 5 3 2 7 7 O 1.21283 * 119.99585 * 0.02562 * 6 5 3 8 8 C 1.50699 * 120.00366 * 180.02562 * 6 5 3 9 9 H 1.08998 * 109.46949 * 59.99452 * 8 6 5 10 10 C 1.53007 * 109.47040 * 300.00135 * 8 6 5 11 11 C 1.50695 * 109.47383 * 180.02562 * 8 6 5 12 12 H 1.08001 * 120.00119 * 35.10169 * 11 8 6 13 13 C 1.37877 * 120.00250 * 215.10626 * 11 8 6 14 14 N 1.31507 * 120.00706 * 184.90733 * 13 11 8 15 15 Si 1.86807 * 119.99617 * 4.90415 * 13 11 8 16 16 H 1.48503 * 109.47044 * 84.82552 * 15 13 11 17 17 H 1.48503 * 109.47110 * 204.82178 * 15 13 11 18 18 H 1.48499 * 109.47347 * 324.82491 * 15 13 11 19 19 C 1.50705 * 109.46894 * 175.00016 * 3 2 1 20 20 C 1.38650 * 120.78865 * 79.71893 * 19 3 2 21 21 C 1.38208 * 119.16155 * 179.75691 * 20 19 3 22 22 N 1.31869 * 120.75925 * 0.52672 * 21 20 19 23 23 C 1.31871 * 121.73024 * 359.74086 * 22 21 20 24 24 C 1.38202 * 120.76047 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47173 * 300.00179 * 1 2 3 27 27 H 1.08994 * 109.47525 * 60.00022 * 1 2 3 28 28 H 1.09000 * 109.47173 * 239.99821 * 2 1 3 29 29 H 1.09003 * 109.46988 * 119.99711 * 2 1 3 30 30 H 0.96999 * 120.00762 * 265.00481 * 5 3 2 31 31 H 1.08997 * 109.46947 * 175.07453 * 10 8 6 32 32 H 1.08995 * 109.46913 * 55.06930 * 10 8 6 33 33 H 1.08998 * 109.46708 * 295.07144 * 10 8 6 34 34 H 0.96994 * 120.00587 * 179.97438 * 14 13 11 35 35 H 1.08004 * 120.42256 * 359.97438 * 20 19 3 36 36 H 1.07994 * 119.61950 * 180.25136 * 21 20 19 37 37 H 1.08001 * 119.61467 * 179.97438 * 23 22 21 38 38 H 1.08003 * 120.41387 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0974 -1.2518 6 6 0.4351 2.6643 -1.3670 7 8 -0.3393 2.6327 -0.4341 8 6 0.0362 3.3376 -2.6549 9 1 0.0673 2.6128 -3.4685 10 6 1.0067 4.4820 -2.9541 11 6 -1.3612 3.8861 -2.5232 12 1 -1.6982 4.2839 -1.5773 13 6 -2.2095 3.8802 -3.6101 14 7 -3.3937 4.4454 -3.5232 15 14 -1.6766 3.0692 -5.2063 16 1 -1.9699 1.6147 -5.1446 17 1 -2.4177 3.6758 -6.3412 18 1 -0.2186 3.2723 -5.4021 19 6 3.5419 1.4443 0.1238 20 6 4.3453 1.1986 -0.9792 21 6 5.7190 1.2134 -0.8285 22 7 6.2659 1.4471 0.3485 23 6 5.5330 1.6794 1.4200 24 6 4.1531 1.6862 1.3446 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2718 2.1231 -1.9978 31 1 0.7717 4.9125 -3.9275 32 1 2.0274 4.0998 -2.9626 33 1 0.9122 5.2488 -2.1852 34 1 -3.9904 4.4415 -4.2879 35 1 3.9032 1.0017 -1.9447 36 1 6.3518 1.0270 -1.6835 37 1 6.0169 1.8664 2.3672 38 1 3.5583 1.8767 2.2257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597291069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:53 Heat of formation + Delta-G solvation = -35.966713 kcal Electronic energy + Delta-G solvation = -19795.679249 eV Core-core repulsion = 16829.757555 eV Total energy + Delta-G solvation = -2965.921694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53392 -40.45954 -37.22681 -35.60732 -33.87353 -32.98510 -32.58541 -32.05690 -27.79222 -27.19846 -24.67282 -24.22705 -23.64159 -21.74794 -20.98568 -19.11644 -18.43454 -17.62072 -16.92814 -16.61496 -16.46935 -16.32327 -15.94382 -15.19270 -14.85030 -14.61591 -14.53873 -14.49314 -14.09460 -13.99157 -13.59144 -13.10396 -12.93754 -12.64636 -12.60089 -12.48510 -12.31817 -12.11365 -11.84399 -11.73428 -11.24254 -10.73858 -10.69543 -10.47444 -10.30727 -10.06738 -9.89503 -8.25816 -6.31956 0.22027 0.22592 1.36124 1.39018 1.49037 1.95476 2.34483 2.36538 2.89159 3.11325 3.39631 3.63347 3.86509 4.03366 4.17545 4.19486 4.22567 4.25339 4.41403 4.45672 4.64973 4.70883 4.73823 4.83694 4.88092 4.91858 4.98765 5.02264 5.11700 5.15609 5.32574 5.47293 5.50474 5.59457 5.66146 5.77562 6.26994 6.67700 6.86487 7.04178 7.29743 7.57095 8.92159 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027811 B = 0.005242 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.552360 B = 5340.511549 C = 5695.269174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.076 0.924 5 N -0.721 5.721 6 C 0.523 3.477 7 O -0.566 6.566 8 C -0.010 4.010 9 H 0.070 0.930 10 C -0.127 4.127 11 C -0.502 4.502 12 H 0.023 0.977 13 C 0.006 3.994 14 N -0.953 5.953 15 Si 0.944 3.056 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.223 1.223 19 C -0.048 4.048 20 C -0.166 4.166 21 C 0.097 3.903 22 N -0.511 5.511 23 C 0.095 3.905 24 C -0.168 4.168 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.409 0.591 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.266 0.734 35 H 0.153 0.847 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.245 -9.919 3.448 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C 0.080 3.920 4 H 0.094 0.906 5 N -0.376 5.376 6 C 0.311 3.689 7 O -0.444 6.444 8 C -0.031 4.031 9 H 0.088 0.912 10 C -0.186 4.186 11 C -0.541 4.541 12 H 0.041 0.959 13 C -0.190 4.190 14 N -0.593 5.593 15 Si 0.766 3.234 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.146 1.146 19 C -0.057 4.057 20 C -0.186 4.186 21 C -0.059 4.059 22 N -0.221 5.221 23 C -0.061 4.061 24 C -0.188 4.188 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.246 0.754 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.170 0.830 36 H 0.198 0.802 37 H 0.195 0.805 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 20.436 -9.886 4.112 23.071 hybrid contribution -1.554 0.109 -0.771 1.738 sum 18.882 -9.777 3.341 21.524 Atomic orbital electron populations 1.21755 0.96335 1.00649 1.01411 1.21873 0.95255 0.94697 1.03646 1.19812 0.89690 0.94338 0.88203 0.90623 1.46120 1.16581 1.58523 1.16411 1.21314 0.80552 0.76640 0.90389 1.90590 1.52474 1.59299 1.42008 1.19329 0.95639 0.95794 0.92367 0.91181 1.21832 0.97533 0.97946 1.01239 1.20862 0.96856 1.39481 0.96877 0.95881 1.26053 0.94533 0.95543 1.02886 1.70069 1.10388 1.46090 1.32722 0.85804 0.80978 0.78823 0.77798 1.19415 1.21335 1.14581 1.20340 0.94427 0.96161 0.94779 1.22170 0.95080 1.01413 0.99949 1.23175 0.92939 0.94221 0.95609 1.67723 1.41870 1.12259 1.00217 1.23126 0.90567 0.94465 0.97930 1.22227 0.96744 1.01331 0.98462 0.92059 0.94123 0.94843 0.90278 0.89457 0.75383 0.92563 0.90856 0.94568 0.92503 0.82979 0.80228 0.80462 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 8.52 71.98 0.61 -3.90 16 2 C -0.12 -2.74 5.59 30.59 0.17 -2.57 16 3 C 0.18 4.70 2.49 44.25 0.11 4.81 16 4 H 0.08 2.30 7.48 -2.39 -0.02 2.28 16 5 N -0.72 -21.00 4.85 -446.10 -2.16 -23.17 16 6 C 0.52 21.66 5.72 87.66 0.50 22.16 16 7 O -0.57 -28.60 12.91 -3.04 -0.04 -28.64 16 8 C -0.01 -0.42 2.30 -12.29 -0.03 -0.45 16 9 H 0.07 2.86 5.29 -2.39 -0.01 2.84 16 10 C -0.13 -4.69 9.12 71.98 0.66 -4.04 16 11 C -0.50 -29.31 8.36 25.60 0.21 -29.09 16 12 H 0.02 1.58 7.61 -2.91 -0.02 1.56 16 13 C 0.01 0.36 5.47 84.66 0.46 0.82 16 14 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 15 Si 0.94 41.83 26.99 68.60 1.85 43.68 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.22 -8.35 6.82 99.48 0.68 -7.68 16 19 C -0.05 -0.98 4.98 -19.67 -0.10 -1.07 16 20 C -0.17 -2.80 9.15 22.36 0.20 -2.59 16 21 C 0.10 1.61 11.18 84.68 0.95 2.56 16 22 N -0.51 -10.22 10.36 -195.85 -2.03 -12.25 16 23 C 0.10 1.67 11.18 84.68 0.95 2.62 16 24 C -0.17 -3.07 9.78 22.36 0.22 -2.85 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.04 1.40 7.85 -2.39 -0.02 1.39 16 27 H 0.03 1.27 5.65 -2.39 -0.01 1.26 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.41 9.24 6.33 -92.71 -0.59 8.66 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 1.99 7.43 -2.39 -0.02 1.97 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.15 1.94 7.03 -2.91 -0.02 1.92 16 36 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -76.70 311.79 3.28 -73.41 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.44 Total: 20.91 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 4.92 Total: -13.60 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -3.89 Total: -95.77 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.04 Total: -28.64 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.85 Total: 43.68 kcal Total: -76.70 3.28 -73.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597291069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.447 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds