Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38669 * 120.78938 * 2 1 4 4 C 1.38183 * 119.16292 * 180.27737 * 3 2 1 5 5 N 1.31890 * 120.76462 * 359.70376 * 4 3 2 6 6 C 1.31861 * 121.72165 * 0.02562 * 5 4 3 7 7 C 1.38222 * 120.76566 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.41809 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47217 * 145.00251 * 8 7 6 10 10 C 1.52999 * 109.47311 * 265.00075 * 8 7 6 11 11 N 1.46498 * 109.47172 * 25.00321 * 8 7 6 12 12 C 1.34770 * 120.00284 * 154.99819 * 11 8 7 13 13 O 1.21283 * 119.99833 * 0.02562 * 12 11 8 14 14 C 1.50703 * 120.00307 * 180.02562 * 12 11 8 15 15 H 1.08995 * 109.47034 * 60.00225 * 14 12 11 16 16 C 1.53005 * 109.47012 * 299.99943 * 14 12 11 17 17 C 1.50704 * 109.47187 * 180.02562 * 14 12 11 18 18 H 1.07994 * 120.00471 * 35.09752 * 17 14 12 19 19 C 1.37881 * 119.99643 * 215.10918 * 17 14 12 20 20 N 1.31516 * 119.99696 * 184.90661 * 19 17 14 21 21 Si 1.86799 * 120.00269 * 4.89906 * 19 17 14 22 22 H 1.48496 * 109.46932 * 84.82446 * 21 19 17 23 23 H 1.48491 * 109.47212 * 204.82741 * 21 19 17 24 24 H 1.48507 * 109.46996 * 324.82915 * 21 19 17 25 25 H 1.09008 * 109.46986 * 270.29423 * 1 2 3 26 26 H 1.09003 * 109.47243 * 30.28719 * 1 2 3 27 27 H 1.08996 * 109.47577 * 150.28920 * 1 2 3 28 28 H 1.08007 * 120.42143 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.61888 * 179.72332 * 4 3 2 30 30 H 1.07999 * 119.61285 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47226 * 180.02562 * 10 8 7 32 32 H 1.08996 * 109.47185 * 300.00545 * 10 8 7 33 33 H 1.08998 * 109.46836 * 59.99943 * 10 8 7 34 34 H 0.97000 * 120.00223 * 334.99829 * 11 8 7 35 35 H 1.08999 * 109.47215 * 295.07447 * 16 14 12 36 36 H 1.08996 * 109.46878 * 175.07571 * 16 14 12 37 37 H 1.08997 * 109.46791 * 55.07504 * 16 14 12 38 38 H 0.97001 * 120.00027 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 -0.0058 5 7 4.2403 0.0000 -0.0055 6 6 3.5982 -1.1517 -0.0001 7 6 2.2166 -1.1909 0.0059 8 6 1.4908 -2.5116 0.0126 9 1 0.5806 -2.4229 0.6056 10 6 1.1288 -2.9019 -1.4218 11 7 2.3551 -3.5408 0.5954 12 6 1.8109 -4.6331 1.1673 13 8 0.6056 -4.7642 1.1990 14 6 2.7000 -5.6917 1.7674 15 1 3.3036 -5.2519 2.5613 16 6 3.6185 -6.2605 0.6840 17 6 1.8499 -6.7984 2.3364 18 1 0.9294 -7.0787 1.8462 19 6 2.2473 -7.4528 3.4831 20 7 1.5574 -8.4812 3.9258 21 14 3.7657 -6.8790 4.4075 22 1 3.3957 -5.7766 5.3310 23 1 4.3275 -8.0108 5.1875 24 1 4.7810 -6.3933 3.4386 25 1 -0.3633 0.0053 1.0277 26 1 -0.3634 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5093 28 1 1.6967 2.1378 0.0004 29 1 4.1583 2.0754 -0.0104 30 1 4.1585 -2.0750 0.0004 31 1 0.6035 -3.8569 -1.4169 32 1 0.4858 -2.1361 -1.8555 33 1 2.0390 -2.9905 -2.0149 34 1 3.3191 -3.4362 0.5698 35 1 3.0194 -6.7768 -0.0661 36 1 4.3204 -6.9623 1.1344 37 1 4.1701 -5.4476 0.2118 38 1 1.8372 -8.9419 4.7323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597467781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = -12.488485 kcal Electronic energy + Delta-G solvation = -19676.446287 eV Core-core repulsion = 16711.542685 eV Total energy + Delta-G solvation = -2964.903602 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72245 -38.90122 -35.72929 -33.92245 -33.64711 -31.68627 -30.77525 -29.36395 -28.03812 -25.25344 -24.46713 -23.23488 -22.10377 -20.80829 -19.35647 -17.16819 -16.96431 -16.63789 -16.10013 -15.23887 -14.86874 -14.69551 -14.41027 -14.04187 -13.60944 -13.22787 -13.06417 -13.00223 -12.82658 -12.59674 -12.39179 -12.36873 -12.06376 -11.55030 -11.39491 -11.16561 -11.08406 -10.74841 -10.27669 -9.81533 -9.59676 -9.55834 -9.17557 -9.16165 -8.71003 -8.59662 -8.52689 -6.06537 -4.05762 0.94210 1.07963 3.24935 3.31775 3.34480 3.57702 3.61039 3.73042 4.22035 4.38749 4.51055 4.53878 4.71072 4.90672 5.21419 5.23640 5.28675 5.29831 5.33769 5.40217 5.56476 5.65404 5.79063 5.83907 5.91001 6.08271 6.15315 6.17048 6.29548 6.39412 6.52606 6.53766 6.82772 6.96499 7.18073 7.55168 7.82096 8.10769 8.53871 9.08817 9.12712 9.53200 11.06722 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.005142 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.002936 B = 5443.726706 C = 5839.601057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.033 4.033 3 C -0.172 4.172 4 C 0.093 3.907 5 N -0.485 5.485 6 C 0.106 3.894 7 C -0.135 4.135 8 C 0.184 3.816 9 H 0.098 0.902 10 C -0.157 4.157 11 N -0.746 5.746 12 C 0.522 3.478 13 O -0.527 6.527 14 C -0.005 4.005 15 H 0.054 0.946 16 C -0.133 4.133 17 C -0.494 4.494 18 H 0.086 0.914 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.870 3.130 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.264 1.264 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.392 0.608 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.026 0.974 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 18.852 -9.531 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.041 4.041 3 C -0.192 4.192 4 C -0.064 4.064 5 N -0.193 5.193 6 C -0.051 4.051 7 C -0.138 4.138 8 C 0.079 3.921 9 H 0.116 0.884 10 C -0.215 4.215 11 N -0.403 5.403 12 C 0.311 3.689 13 O -0.401 6.401 14 C -0.027 4.027 15 H 0.072 0.928 16 C -0.192 4.192 17 C -0.532 4.532 18 H 0.104 0.896 19 C -0.130 4.130 20 N -0.533 5.533 21 Si 0.697 3.303 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.189 1.189 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.228 0.772 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.046 18.572 -9.342 21.011 hybrid contribution 0.419 0.396 0.645 0.865 sum 3.465 18.968 -8.697 21.152 Atomic orbital electron populations 1.20954 0.90097 1.03676 1.03436 1.20152 0.96904 0.92158 0.94922 1.22012 0.95630 0.98457 1.03127 1.22736 0.91785 0.96254 0.95581 1.67698 1.41088 0.98378 1.12168 1.22516 0.91119 0.96255 0.95245 1.20962 0.95391 0.95628 1.01788 1.19591 0.94013 0.83256 0.95289 0.88431 1.22170 1.01767 1.02485 0.95118 1.46559 1.09517 1.22055 1.62132 1.21794 0.90109 0.81347 0.75681 1.90576 1.15750 1.77149 1.56628 1.19360 0.94690 0.93421 0.95229 0.92806 1.21952 0.98772 0.99506 0.98931 1.20735 1.08300 1.14256 1.09939 0.89595 1.25023 0.96434 0.94716 0.96812 1.69883 1.39771 1.20271 1.23332 0.86979 0.84057 0.78715 0.80526 1.20160 1.21232 1.18890 0.90096 0.90912 0.90273 0.84783 0.82853 0.82951 0.90998 0.92063 0.92424 0.77215 0.92849 0.92666 0.95543 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.31 36.01 0.34 -0.76 16 2 C -0.03 -0.35 5.92 -104.32 -0.62 -0.97 16 3 C -0.17 -1.62 9.82 -39.44 -0.39 -2.01 16 4 C 0.09 0.96 11.18 -17.55 -0.20 0.76 16 5 N -0.48 -6.16 10.36 -13.25 -0.14 -6.30 16 6 C 0.11 1.33 10.40 -17.55 -0.18 1.15 16 7 C -0.14 -1.68 5.07 -104.49 -0.53 -2.20 16 8 C 0.18 2.61 2.11 -69.08 -0.15 2.46 16 9 H 0.10 1.53 6.55 -51.93 -0.34 1.19 16 10 C -0.16 -2.00 9.30 37.16 0.35 -1.66 16 11 N -0.75 -12.17 4.86 -54.94 -0.27 -12.43 16 12 C 0.52 11.27 7.11 -10.99 -0.08 11.19 16 13 O -0.53 -13.35 15.43 5.55 0.09 -13.27 16 14 C -0.01 -0.12 2.30 -92.92 -0.21 -0.33 16 15 H 0.05 1.22 5.29 -51.93 -0.27 0.94 16 16 C -0.13 -2.63 9.12 37.16 0.34 -2.29 16 17 C -0.49 -14.10 8.36 -34.44 -0.29 -14.39 16 18 H 0.09 2.78 7.61 -52.49 -0.40 2.38 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.89 -27.52 13.96 55.43 0.77 -26.74 16 21 Si 0.87 20.99 26.99 -169.99 -4.59 16.40 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.26 -5.87 6.82 56.52 0.39 -5.49 16 25 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 27 H 0.08 0.72 5.61 -51.93 -0.29 0.43 16 28 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 29 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.15 1.73 6.09 -52.49 -0.32 1.41 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.65 6.94 -51.93 -0.36 0.29 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.39 5.47 5.60 -40.82 -0.23 5.24 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.03 0.41 7.43 -51.93 -0.39 0.02 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -33.76 312.47 -6.27 -40.03 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.13 Total: 4.68 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.72 Total: -7.07 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.37 Total: -45.48 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.59 Total: 16.40 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.76 -6.27 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597467781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.541 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds