Wall clock time and date at job start Mon Mar 30 2020 06:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38669 * 120.78938 * 2 1 4 4 C 1.38183 * 119.16292 * 180.27737 * 3 2 1 5 5 N 1.31890 * 120.76462 * 359.70376 * 4 3 2 6 6 C 1.31861 * 121.72165 * 0.02562 * 5 4 3 7 7 C 1.38222 * 120.76566 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.41809 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47217 * 145.00251 * 8 7 6 10 10 C 1.52999 * 109.47311 * 265.00075 * 8 7 6 11 11 N 1.46498 * 109.47172 * 25.00321 * 8 7 6 12 12 C 1.34770 * 120.00284 * 154.99819 * 11 8 7 13 13 O 1.21283 * 119.99833 * 0.02562 * 12 11 8 14 14 C 1.50703 * 120.00307 * 180.02562 * 12 11 8 15 15 H 1.08995 * 109.47034 * 60.00225 * 14 12 11 16 16 C 1.53005 * 109.47012 * 299.99943 * 14 12 11 17 17 C 1.50704 * 109.47187 * 180.02562 * 14 12 11 18 18 H 1.07994 * 120.00471 * 35.09752 * 17 14 12 19 19 C 1.37881 * 119.99643 * 215.10918 * 17 14 12 20 20 N 1.31516 * 119.99696 * 184.90661 * 19 17 14 21 21 Si 1.86799 * 120.00269 * 4.89906 * 19 17 14 22 22 H 1.48496 * 109.46932 * 84.82446 * 21 19 17 23 23 H 1.48491 * 109.47212 * 204.82741 * 21 19 17 24 24 H 1.48507 * 109.46996 * 324.82915 * 21 19 17 25 25 H 1.09008 * 109.46986 * 270.29423 * 1 2 3 26 26 H 1.09003 * 109.47243 * 30.28719 * 1 2 3 27 27 H 1.08996 * 109.47577 * 150.28920 * 1 2 3 28 28 H 1.08007 * 120.42143 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.61888 * 179.72332 * 4 3 2 30 30 H 1.07999 * 119.61285 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47226 * 180.02562 * 10 8 7 32 32 H 1.08996 * 109.47185 * 300.00545 * 10 8 7 33 33 H 1.08998 * 109.46836 * 59.99943 * 10 8 7 34 34 H 0.97000 * 120.00223 * 334.99829 * 11 8 7 35 35 H 1.08999 * 109.47215 * 295.07447 * 16 14 12 36 36 H 1.08996 * 109.46878 * 175.07571 * 16 14 12 37 37 H 1.08997 * 109.46791 * 55.07504 * 16 14 12 38 38 H 0.97001 * 120.00027 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 -0.0058 5 7 4.2403 0.0000 -0.0055 6 6 3.5982 -1.1517 -0.0001 7 6 2.2166 -1.1909 0.0059 8 6 1.4908 -2.5116 0.0126 9 1 0.5806 -2.4229 0.6056 10 6 1.1288 -2.9019 -1.4218 11 7 2.3551 -3.5408 0.5954 12 6 1.8109 -4.6331 1.1673 13 8 0.6056 -4.7642 1.1990 14 6 2.7000 -5.6917 1.7674 15 1 3.3036 -5.2519 2.5613 16 6 3.6185 -6.2605 0.6840 17 6 1.8499 -6.7984 2.3364 18 1 0.9294 -7.0787 1.8462 19 6 2.2473 -7.4528 3.4831 20 7 1.5574 -8.4812 3.9258 21 14 3.7657 -6.8790 4.4075 22 1 3.3957 -5.7766 5.3310 23 1 4.3275 -8.0108 5.1875 24 1 4.7810 -6.3933 3.4386 25 1 -0.3633 0.0053 1.0277 26 1 -0.3634 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5093 28 1 1.6967 2.1378 0.0004 29 1 4.1583 2.0754 -0.0104 30 1 4.1585 -2.0750 0.0004 31 1 0.6035 -3.8569 -1.4169 32 1 0.4858 -2.1361 -1.8555 33 1 2.0390 -2.9905 -2.0149 34 1 3.3191 -3.4362 0.5698 35 1 3.0194 -6.7768 -0.0661 36 1 4.3204 -6.9623 1.1344 37 1 4.1701 -5.4476 0.2118 38 1 1.8372 -8.9419 4.7323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597467781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:21 Heat of formation + Delta-G solvation = -36.441229 kcal Electronic energy + Delta-G solvation = -19677.484956 eV Core-core repulsion = 16711.542685 eV Total energy + Delta-G solvation = -2965.942271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.67878 -40.43619 -36.98363 -35.62805 -34.87325 -33.50463 -32.05707 -30.46136 -28.80112 -27.22974 -25.54202 -24.59674 -23.18007 -21.96908 -20.93258 -19.14634 -18.23232 -17.82614 -17.13566 -16.59443 -16.28579 -15.97688 -15.69906 -15.40103 -14.91826 -14.56628 -14.41297 -14.32802 -13.80852 -13.75739 -13.58551 -13.39146 -13.24234 -13.06996 -12.95862 -12.61186 -12.52927 -12.15628 -12.07992 -11.75905 -11.25220 -10.75879 -10.47573 -10.40917 -10.40221 -10.15300 -9.87656 -8.27187 -6.33204 0.11446 0.26800 1.35524 1.37839 1.47967 1.88910 2.27972 2.35049 2.80490 3.09655 3.35258 3.66489 3.80139 3.89697 4.02824 4.14441 4.29013 4.36751 4.41303 4.48557 4.59149 4.68831 4.73666 4.74164 4.80183 4.84366 4.89313 5.03441 5.12236 5.15524 5.23973 5.37622 5.50009 5.58885 5.60159 5.75810 6.25368 6.63409 6.82565 7.00182 7.28058 7.49838 8.90736 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.005142 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.002936 B = 5443.726706 C = 5839.601057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.038 4.038 3 C -0.165 4.165 4 C 0.089 3.911 5 N -0.508 5.508 6 C 0.093 3.907 7 C -0.148 4.148 8 C 0.187 3.813 9 H 0.078 0.922 10 C -0.151 4.151 11 N -0.724 5.724 12 C 0.523 3.477 13 O -0.577 6.577 14 C -0.011 4.011 15 H 0.069 0.931 16 C -0.127 4.127 17 C -0.504 4.504 18 H 0.024 0.976 19 C 0.008 3.992 20 N -0.951 5.951 21 Si 0.943 3.057 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.224 1.224 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.168 0.832 29 H 0.183 0.817 30 H 0.159 0.841 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.407 0.593 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 22.228 -10.161 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.047 4.047 3 C -0.184 4.184 4 C -0.067 4.067 5 N -0.217 5.217 6 C -0.063 4.063 7 C -0.151 4.151 8 C 0.082 3.918 9 H 0.096 0.904 10 C -0.209 4.209 11 N -0.380 5.380 12 C 0.312 3.688 13 O -0.455 6.455 14 C -0.032 4.032 15 H 0.087 0.913 16 C -0.185 4.185 17 C -0.543 4.543 18 H 0.043 0.957 19 C -0.189 4.189 20 N -0.591 5.591 21 Si 0.765 3.235 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.147 1.147 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.185 0.815 29 H 0.200 0.800 30 H 0.176 0.824 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.246 0.754 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.588 21.995 -10.022 24.808 hybrid contribution -0.460 -0.558 0.765 1.053 sum 5.128 21.436 -9.257 23.906 Atomic orbital electron populations 1.21003 0.89002 1.04583 1.03607 1.20438 0.97855 0.92124 0.94262 1.22361 0.95416 0.99233 1.01423 1.23315 0.92619 0.96571 0.94188 1.67727 1.41779 0.99032 1.13194 1.22606 0.91124 0.96806 0.95769 1.20765 0.95471 0.94967 1.03896 1.19616 0.93105 0.83681 0.95412 0.90403 1.22104 1.02461 1.01746 0.94579 1.46234 1.10617 1.20815 1.60335 1.21451 0.89102 0.82341 0.75921 1.90563 1.17661 1.78391 1.58900 1.19355 0.94697 0.92417 0.96774 0.91307 1.21834 0.98150 1.00941 0.97617 1.20871 1.07048 1.16179 1.10174 0.95715 1.26032 1.00605 0.94508 0.97744 1.70069 1.42560 1.22214 1.24250 0.85819 0.79998 0.78258 0.79445 1.19690 1.21024 1.14650 0.90267 0.88298 0.91107 0.81469 0.79983 0.82434 0.93792 0.89724 0.91193 0.75423 0.94164 0.92455 0.90742 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.31 71.24 0.66 -1.25 16 2 C -0.04 -0.72 5.92 -19.67 -0.12 -0.84 16 3 C -0.16 -2.46 9.82 22.36 0.22 -2.24 16 4 C 0.09 1.51 11.18 84.67 0.95 2.46 16 5 N -0.51 -11.51 10.36 -195.84 -2.03 -13.54 16 6 C 0.09 2.13 10.40 84.68 0.88 3.01 16 7 C -0.15 -3.38 5.07 -19.78 -0.10 -3.48 16 8 C 0.19 5.14 2.11 44.24 0.09 5.23 16 9 H 0.08 2.48 6.55 -2.39 -0.02 2.46 16 10 C -0.15 -3.72 9.30 71.98 0.67 -3.05 16 11 N -0.72 -22.81 4.86 -446.11 -2.17 -24.97 16 12 C 0.52 22.80 7.11 87.66 0.62 23.42 16 13 O -0.58 -30.66 15.43 -3.04 -0.05 -30.70 16 14 C -0.01 -0.49 2.30 -12.28 -0.03 -0.52 16 15 H 0.07 2.93 5.29 -2.39 -0.01 2.92 16 16 C -0.13 -4.77 9.12 71.98 0.66 -4.11 16 17 C -0.50 -29.96 8.36 25.60 0.21 -29.75 16 18 H 0.02 1.72 7.61 -2.91 -0.02 1.70 16 19 C 0.01 0.45 5.47 84.66 0.46 0.91 16 20 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 21 Si 0.94 42.81 26.99 68.60 1.85 44.67 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.22 -8.68 6.82 99.48 0.68 -8.00 16 25 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.10 0.97 8.10 -2.39 -0.02 0.95 16 27 H 0.07 1.19 5.61 -2.39 -0.01 1.18 16 28 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 29 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.16 3.17 6.09 -2.91 -0.02 3.15 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.68 6.94 -2.39 -0.02 1.66 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 10.33 5.60 -92.71 -0.52 9.81 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 2.06 7.43 -2.39 -0.02 2.04 16 38 H 0.27 15.89 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -78.68 312.47 3.62 -75.07 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.52 Total: 20.41 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.19 Total: -10.20 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -3.90 Total: -99.24 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.05 Total: -30.70 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.85 Total: 44.67 kcal Total: -78.68 3.62 -75.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597467781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.624 kcal (2) G-P(sol) polarization free energy of solvation -78.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds