Wall clock time and date at job start Mon Mar 30 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47455 * 2 1 4 4 C 1.50702 * 109.47156 * 120.00027 * 2 1 3 5 5 N 1.34661 * 125.79888 * 300.02396 * 4 2 1 6 6 H 0.97006 * 124.84838 * 359.95527 * 5 4 2 7 7 C 1.36443 * 110.30106 * 179.97438 * 5 4 2 8 8 C 1.34492 * 108.85267 * 359.71283 * 7 5 4 9 9 C 1.36762 * 125.80712 * 119.99599 * 4 2 1 10 10 C 1.47263 * 126.93770 * 0.02562 * 9 4 2 11 11 O 1.21626 * 120.00144 * 359.97438 * 10 9 4 12 12 N 1.34780 * 119.99859 * 179.97438 * 10 9 4 13 13 C 1.47588 * 134.49247 * 179.97438 * 12 10 9 14 14 C 1.53940 * 86.11335 * 155.36298 * 13 12 10 15 15 C 1.50706 * 113.74114 * 137.95690 * 14 13 12 16 16 H 1.07997 * 119.99944 * 1.91819 * 15 14 13 17 17 C 1.37875 * 119.99832 * 181.92343 * 15 14 13 18 18 N 1.31514 * 119.99723 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00382 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47313 * 90.00052 * 19 17 15 21 21 H 1.48506 * 109.47569 * 210.00014 * 19 17 15 22 22 H 1.48502 * 109.47443 * 330.00414 * 19 17 15 23 23 C 1.47811 * 134.45843 * 359.87194 * 12 10 9 24 24 H 1.09001 * 109.47440 * 300.00499 * 1 2 3 25 25 H 1.09004 * 109.47133 * 59.99831 * 1 2 3 26 26 H 1.08999 * 109.47485 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46929 * 239.99409 * 2 1 3 28 28 H 1.09001 * 109.47524 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47088 * 300.00197 * 3 2 1 30 30 H 1.09001 * 109.47204 * 59.99356 * 3 2 1 31 31 H 1.07994 * 125.57742 * 180.02562 * 7 5 4 32 32 H 1.07997 * 126.83487 * 180.26568 * 8 7 5 33 33 H 1.08999 * 113.76895 * 41.06178 * 13 12 10 34 34 H 1.09000 * 113.76895 * 269.66571 * 13 12 10 35 35 H 1.09002 * 113.74158 * 269.15035 * 14 13 12 36 36 H 0.97001 * 120.00532 * 179.97438 * 18 17 15 37 37 H 1.09000 * 113.76749 * 90.37025 * 23 12 10 38 38 H 1.09001 * 113.83336 * 318.91538 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7796 -0.3539 2.5042 6 1 1.2412 0.4080 2.7701 7 6 2.3894 -1.2170 3.3672 8 6 3.0435 -2.1527 2.6563 9 6 2.8218 -1.8271 1.2434 10 6 3.3395 -2.5585 0.0748 11 8 3.0706 -2.1781 -1.0487 12 7 4.1113 -3.6493 0.2503 13 6 4.7826 -4.5986 -0.6589 14 6 5.7548 -4.8636 0.5049 15 6 6.1005 -6.3191 0.6873 16 1 5.6980 -7.0585 0.0109 17 6 6.9305 -6.7065 1.7178 18 7 7.2318 -7.9767 1.8772 19 14 7.6271 -5.4275 2.8874 20 1 6.6998 -5.2474 4.0332 21 1 8.9495 -5.8820 3.3875 22 1 7.7858 -4.1362 2.1714 23 6 4.6267 -4.3738 1.4311 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 2.3490 -1.1612 4.4450 32 1 3.6198 -2.9779 3.0479 33 1 5.2495 -4.1246 -1.5222 34 1 4.1701 -5.4602 -0.9246 35 1 6.6315 -4.2160 0.5004 36 1 7.8160 -8.2494 2.6019 37 1 3.9683 -5.1693 1.7803 38 1 4.9694 -3.7207 2.2336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598025673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:50 Heat of formation + Delta-G solvation = 33.906661 kcal Electronic energy + Delta-G solvation = -19740.623542 eV Core-core repulsion = 16777.731785 eV Total energy + Delta-G solvation = -2962.891757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.23321 -39.06343 -36.86181 -35.16371 -32.57353 -31.13824 -29.23794 -28.39678 -27.29234 -25.57164 -25.10009 -22.37090 -21.55831 -20.30247 -19.48189 -17.96894 -17.33295 -17.01870 -15.65817 -15.07206 -14.93891 -14.61863 -14.46248 -14.13209 -13.80132 -13.27289 -12.96601 -12.84744 -12.83208 -12.55105 -12.35655 -12.13107 -11.74091 -11.57215 -11.28770 -11.22268 -10.88322 -10.85463 -10.49872 -9.98639 -9.73036 -9.29476 -8.96122 -8.70282 -8.62261 -8.16728 -7.78373 -6.15691 -4.17671 1.99172 2.58285 3.17206 3.23547 3.32921 3.35688 3.72814 4.02539 4.35145 4.62323 4.82541 5.05901 5.07202 5.10225 5.28861 5.38051 5.40655 5.52366 5.63390 5.73414 5.84636 5.88853 5.96938 6.04657 6.10761 6.12780 6.27957 6.31274 6.36841 6.49188 6.50077 6.70079 6.90379 7.12514 7.27314 7.50727 7.61211 8.39018 8.54174 8.86851 8.90644 9.45341 10.96621 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.005266 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.087308 B = 5315.851377 C = 5854.194177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.142 4.142 4 C 0.106 3.894 5 N -0.553 5.553 6 H 0.411 0.589 7 C -0.026 4.026 8 C -0.167 4.167 9 C -0.219 4.219 10 C 0.601 3.399 11 O -0.572 6.572 12 N -0.633 5.633 13 C 0.120 3.880 14 C -0.014 4.014 15 C -0.511 4.511 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.895 5.895 19 Si 0.871 3.129 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.262 1.262 23 C 0.089 3.911 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.127 0.873 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.167 0.833 32 H 0.150 0.850 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.266 0.734 37 H 0.085 0.915 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 16.596 2.974 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.200 4.200 4 C -0.012 4.012 5 N -0.148 5.148 6 H 0.247 0.753 7 C -0.153 4.153 8 C -0.191 4.191 9 C -0.229 4.229 10 C 0.394 3.606 11 O -0.455 6.455 12 N -0.365 5.365 13 C -0.002 4.002 14 C -0.034 4.034 15 C -0.549 4.549 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.532 5.532 19 Si 0.698 3.302 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.186 1.186 23 C -0.033 4.033 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.184 0.816 32 H 0.168 0.832 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.319 16.893 2.557 20.495 hybrid contribution 0.145 0.815 1.222 1.476 sum -11.175 17.708 3.779 21.278 Atomic orbital electron populations 1.21818 0.94552 1.02223 1.01381 1.20220 0.95449 0.95691 0.95637 1.21819 1.01750 0.95037 1.01378 1.20180 0.99401 0.96233 0.85345 1.41467 1.42299 1.25603 1.05417 0.75334 1.21695 1.03302 0.94674 0.95615 1.22446 1.03835 1.01085 0.91720 1.20206 1.08898 1.00410 0.93378 1.17046 0.76564 0.79698 0.87334 1.90609 1.60593 1.68935 1.25354 1.50098 1.48831 1.25349 1.12267 1.23231 0.92469 0.89419 0.95079 1.21088 0.92897 0.98233 0.91163 1.20859 1.29565 0.89925 1.14583 0.90246 1.24980 0.95339 0.95042 0.97257 1.69894 1.36209 1.15310 1.31812 0.86922 0.78977 0.82661 0.81659 1.19890 1.21275 1.18626 1.24057 0.96208 0.92902 0.90174 0.93581 0.91883 0.92193 0.85510 0.92193 0.91889 0.93577 0.81603 0.83222 0.91708 0.90256 0.92007 0.92451 0.89675 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.18 37.16 0.34 -1.10 16 2 C -0.05 -0.64 3.24 -91.77 -0.30 -0.94 16 3 C -0.14 -1.45 9.17 37.16 0.34 -1.11 16 4 C 0.11 1.50 5.68 -81.88 -0.47 1.04 16 5 N -0.55 -6.05 5.90 -9.11 -0.05 -6.10 16 6 H 0.41 3.05 8.96 -40.82 -0.37 2.68 16 7 C -0.03 -0.31 11.89 -16.82 -0.20 -0.51 16 8 C -0.17 -2.56 10.04 -37.50 -0.38 -2.94 16 9 C -0.22 -3.83 6.28 -103.36 -0.65 -4.48 16 10 C 0.60 12.37 8.04 -12.59 -0.10 12.27 16 11 O -0.57 -12.68 15.20 5.25 0.08 -12.60 16 12 N -0.63 -13.11 3.61 -179.56 -0.65 -13.76 16 13 C 0.12 2.50 8.39 -2.97 -0.02 2.47 16 14 C -0.01 -0.32 2.90 -90.84 -0.26 -0.59 16 15 C -0.51 -13.47 9.33 -34.44 -0.32 -13.79 16 16 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 17 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -26.07 13.96 55.43 0.77 -25.30 16 19 Si 0.87 20.18 26.96 -169.99 -4.58 15.60 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.26 -5.87 6.29 56.52 0.36 -5.51 16 23 C 0.09 1.82 5.96 -2.83 -0.02 1.80 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.13 2.01 5.50 -51.93 -0.29 1.72 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.15 2.31 5.43 -52.49 -0.28 2.02 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 35 H 0.06 1.42 6.70 -51.93 -0.35 1.08 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 38 H 0.06 1.16 6.09 -51.93 -0.32 0.84 16 LS Contribution 311.99 15.07 4.70 4.70 Total: -1.00 -31.42 311.99 -7.29 -38.71 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.43 Total: 4.65 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.13 Total: -5.89 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.07 Total: -45.16 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.58 Total: 15.60 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.42 -7.29 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.612 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds