Wall clock time and date at job start Mon Mar 30 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47455 * 2 1 4 4 C 1.50702 * 109.47156 * 120.00027 * 2 1 3 5 5 N 1.34661 * 125.79888 * 300.02396 * 4 2 1 6 6 H 0.97006 * 124.84838 * 359.95527 * 5 4 2 7 7 C 1.36443 * 110.30106 * 179.97438 * 5 4 2 8 8 C 1.34492 * 108.85267 * 359.71283 * 7 5 4 9 9 C 1.36762 * 125.80712 * 119.99599 * 4 2 1 10 10 C 1.47263 * 126.93770 * 0.02562 * 9 4 2 11 11 O 1.21626 * 120.00144 * 359.97438 * 10 9 4 12 12 N 1.34780 * 119.99859 * 179.97438 * 10 9 4 13 13 C 1.47588 * 134.49247 * 179.97438 * 12 10 9 14 14 C 1.53940 * 86.11335 * 155.36298 * 13 12 10 15 15 C 1.50706 * 113.74114 * 137.95690 * 14 13 12 16 16 H 1.07997 * 119.99944 * 1.91819 * 15 14 13 17 17 C 1.37875 * 119.99832 * 181.92343 * 15 14 13 18 18 N 1.31514 * 119.99723 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00382 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47313 * 90.00052 * 19 17 15 21 21 H 1.48506 * 109.47569 * 210.00014 * 19 17 15 22 22 H 1.48502 * 109.47443 * 330.00414 * 19 17 15 23 23 C 1.47811 * 134.45843 * 359.87194 * 12 10 9 24 24 H 1.09001 * 109.47440 * 300.00499 * 1 2 3 25 25 H 1.09004 * 109.47133 * 59.99831 * 1 2 3 26 26 H 1.08999 * 109.47485 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46929 * 239.99409 * 2 1 3 28 28 H 1.09001 * 109.47524 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47088 * 300.00197 * 3 2 1 30 30 H 1.09001 * 109.47204 * 59.99356 * 3 2 1 31 31 H 1.07994 * 125.57742 * 180.02562 * 7 5 4 32 32 H 1.07997 * 126.83487 * 180.26568 * 8 7 5 33 33 H 1.08999 * 113.76895 * 41.06178 * 13 12 10 34 34 H 1.09000 * 113.76895 * 269.66571 * 13 12 10 35 35 H 1.09002 * 113.74158 * 269.15035 * 14 13 12 36 36 H 0.97001 * 120.00532 * 179.97438 * 18 17 15 37 37 H 1.09000 * 113.76749 * 90.37025 * 23 12 10 38 38 H 1.09001 * 113.83336 * 318.91538 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7796 -0.3539 2.5042 6 1 1.2412 0.4080 2.7701 7 6 2.3894 -1.2170 3.3672 8 6 3.0435 -2.1527 2.6563 9 6 2.8218 -1.8271 1.2434 10 6 3.3395 -2.5585 0.0748 11 8 3.0706 -2.1781 -1.0487 12 7 4.1113 -3.6493 0.2503 13 6 4.7826 -4.5986 -0.6589 14 6 5.7548 -4.8636 0.5049 15 6 6.1005 -6.3191 0.6873 16 1 5.6980 -7.0585 0.0109 17 6 6.9305 -6.7065 1.7178 18 7 7.2318 -7.9767 1.8772 19 14 7.6271 -5.4275 2.8874 20 1 6.6998 -5.2474 4.0332 21 1 8.9495 -5.8820 3.3875 22 1 7.7858 -4.1362 2.1714 23 6 4.6267 -4.3738 1.4311 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 2.3490 -1.1612 4.4450 32 1 3.6198 -2.9779 3.0479 33 1 5.2495 -4.1246 -1.5222 34 1 4.1701 -5.4602 -0.9246 35 1 6.6315 -4.2160 0.5004 36 1 7.8160 -8.2494 2.6019 37 1 3.9683 -5.1693 1.7803 38 1 4.9694 -3.7207 2.2336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598025673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:50 Heat of formation + Delta-G solvation = 13.374604 kcal Electronic energy + Delta-G solvation = -19741.513879 eV Core-core repulsion = 16777.731785 eV Total energy + Delta-G solvation = -2963.782094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.31096 -40.67604 -38.49585 -36.09193 -34.62514 -32.39857 -30.87378 -29.45702 -28.07356 -27.29848 -26.88843 -23.66254 -22.65462 -21.39916 -21.15904 -19.41662 -19.09350 -18.35230 -17.13292 -16.73107 -16.37612 -15.89613 -15.59566 -15.34741 -15.03915 -14.81613 -14.65082 -14.02231 -13.96343 -13.78245 -13.51512 -13.45858 -13.31062 -13.06865 -12.69338 -12.44651 -12.14952 -12.01539 -11.84666 -11.79218 -11.53528 -11.23911 -10.74053 -10.52489 -9.86429 -9.52786 -9.09085 -8.25798 -6.33250 0.75885 1.41335 1.44876 1.54111 1.54457 1.98279 2.39845 2.42271 2.58589 3.05675 3.67983 3.79152 3.98656 4.07835 4.20575 4.26105 4.35859 4.42863 4.53893 4.56827 4.60160 4.67942 4.70200 4.80126 4.84683 4.88373 4.96612 4.99987 5.14339 5.24225 5.32419 5.40219 5.43122 5.62831 5.77869 6.02825 6.29926 6.68107 6.71429 6.93631 7.31063 7.34953 8.90019 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.005266 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.087308 B = 5315.851377 C = 5854.194177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C -0.137 4.137 4 C 0.117 3.883 5 N -0.532 5.532 6 H 0.433 0.567 7 C 0.005 3.995 8 C -0.201 4.201 9 C -0.267 4.267 10 C 0.593 3.407 11 O -0.599 6.599 12 N -0.638 5.638 13 C 0.119 3.881 14 C -0.017 4.017 15 C -0.515 4.515 16 H 0.041 0.959 17 C 0.023 3.977 18 N -0.945 5.945 19 Si 0.934 3.066 20 H -0.252 1.252 21 H -0.289 1.289 22 H -0.248 1.248 23 C 0.105 3.895 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.211 0.789 32 H 0.144 0.856 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 20.059 5.432 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.073 4.073 3 C -0.194 4.194 4 C -0.003 4.003 5 N -0.128 5.128 6 H 0.273 0.727 7 C -0.123 4.123 8 C -0.224 4.224 9 C -0.277 4.277 10 C 0.388 3.612 11 O -0.484 6.484 12 N -0.371 5.371 13 C -0.003 4.003 14 C -0.037 4.037 15 C -0.553 4.553 16 H 0.059 0.941 17 C -0.175 4.175 18 N -0.584 5.584 19 Si 0.757 3.243 20 H -0.177 1.177 21 H -0.215 1.215 22 H -0.171 1.171 23 C -0.017 4.017 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.228 0.772 32 H 0.162 0.838 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.657 20.390 5.025 24.520 hybrid contribution 0.473 -0.268 0.372 0.659 sum -12.184 20.122 5.398 24.135 Atomic orbital electron populations 1.21785 0.92463 1.01697 1.03457 1.20190 0.97125 0.96565 0.93465 1.21785 1.00592 0.93571 1.03452 1.20300 0.97912 0.95099 0.87002 1.41442 1.41480 1.25819 1.04065 0.72691 1.22247 1.00292 0.92522 0.97221 1.22483 1.06126 1.02777 0.91058 1.20174 1.11849 1.02429 0.93277 1.17647 0.75995 0.79346 0.88246 1.90589 1.61550 1.69536 1.26761 1.50088 1.49454 1.25613 1.11903 1.23136 0.92302 0.89800 0.95076 1.20998 0.93773 0.95766 0.93120 1.20994 1.29246 0.91263 1.13760 0.94100 1.25811 0.95646 0.96998 0.99074 1.70039 1.37577 1.17709 1.33050 0.85909 0.78293 0.80205 0.79872 1.17653 1.21486 1.17149 1.23819 0.94738 0.92995 0.90179 0.90826 0.90531 0.94004 0.89398 0.93975 0.90542 0.90823 0.77231 0.83848 0.91190 0.90670 0.91882 0.92295 0.89978 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.18 71.98 0.66 -1.76 16 2 C -0.05 -1.28 3.24 -11.54 -0.04 -1.32 16 3 C -0.14 -2.42 9.17 71.98 0.66 -1.76 16 4 C 0.12 3.06 5.68 41.78 0.24 3.29 16 5 N -0.53 -9.34 5.90 -182.73 -1.08 -10.42 16 6 H 0.43 4.00 8.96 -92.70 -0.83 3.17 16 7 C 0.00 0.09 11.89 83.12 0.99 1.08 16 8 C -0.20 -5.70 10.04 23.62 0.24 -5.46 16 9 C -0.27 -9.10 6.28 -19.04 -0.12 -9.22 16 10 C 0.59 24.76 8.04 86.62 0.70 25.45 16 11 O -0.60 -27.45 15.20 -4.11 -0.06 -27.51 16 12 N -0.64 -26.75 3.61 -840.25 -3.04 -29.79 16 13 C 0.12 5.12 8.39 86.48 0.73 5.85 16 14 C -0.02 -0.78 2.90 -10.88 -0.03 -0.81 16 15 C -0.51 -27.98 9.33 25.60 0.24 -27.74 16 16 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 17 C 0.02 1.28 5.47 84.65 0.46 1.74 16 18 N -0.94 -56.54 13.96 21.45 0.30 -56.24 16 19 Si 0.93 41.08 26.96 68.60 1.85 42.93 16 20 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.25 -10.27 6.29 99.48 0.63 -9.64 16 23 C 0.11 4.24 5.96 86.45 0.51 4.75 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 2.83 5.50 -2.39 -0.01 2.82 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.21 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.14 4.14 5.43 -2.91 -0.02 4.12 16 33 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.08 3.25 8.09 -2.39 -0.02 3.23 16 35 H 0.06 2.87 6.70 -2.39 -0.02 2.85 16 36 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.08 3.34 8.09 -2.39 -0.02 3.32 16 38 H 0.08 2.94 6.09 -2.39 -0.01 2.92 16 Total: -1.00 -71.67 311.99 3.36 -68.31 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.16 Total: 18.61 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 5.23 Total: -5.89 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -3.81 Total: -96.44 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.06 Total: -27.51 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.85 Total: 42.93 kcal Total: -71.67 3.36 -68.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.680 kcal (2) G-P(sol) polarization free energy of solvation -71.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds