Wall clock time and date at job start Mon Mar 30 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38275 * 119.54335 * 2 1 4 4 C 1.38499 * 119.24011 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.82108 * 179.97438 * 4 3 2 6 6 C 1.39282 * 118.35864 * 0.02562 * 4 3 2 7 7 N 1.39956 * 120.48564 * 179.97438 * 6 4 3 8 8 C 1.34774 * 120.00318 * 309.91545 * 7 6 4 9 9 O 1.21287 * 119.99888 * 354.99689 * 8 7 6 10 10 C 1.50695 * 119.99996 * 175.00019 * 8 7 6 11 11 H 1.09003 * 109.47152 * 59.99997 * 10 8 7 12 12 C 1.52998 * 109.47300 * 299.99777 * 10 8 7 13 13 C 1.50698 * 109.47068 * 179.97438 * 10 8 7 14 14 H 1.07997 * 120.00145 * 359.97438 * 13 10 8 15 15 C 1.37881 * 120.00232 * 179.97438 * 13 10 8 16 16 N 1.31520 * 119.99807 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00360 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46987 * 60.00167 * 17 15 13 19 19 H 1.48495 * 109.47150 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46820 * 300.00227 * 17 15 13 21 21 C 1.38848 * 119.02740 * 0.27525 * 6 4 3 22 22 C 1.50692 * 119.66837 * 179.70399 * 21 6 4 23 23 N 1.31817 * 120.65595 * 359.40785 * 21 6 4 24 24 H 1.09001 * 109.46821 * 89.99893 * 1 2 3 25 25 H 1.08997 * 109.47014 * 210.00062 * 1 2 3 26 26 H 1.09001 * 109.46862 * 330.00137 * 1 2 3 27 27 H 1.08006 * 120.37746 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47264 * 277.98357 * 5 4 3 29 29 H 1.08999 * 109.47043 * 37.98024 * 5 4 3 30 30 H 1.09000 * 109.47371 * 157.97682 * 5 4 3 31 31 H 0.97000 * 119.99799 * 129.90688 * 7 6 4 32 32 H 1.08998 * 109.46764 * 300.00314 * 12 10 8 33 33 H 1.08998 * 109.47222 * 179.97438 * 12 10 8 34 34 H 1.08995 * 109.47249 * 59.99718 * 12 10 8 35 35 H 0.96992 * 119.99809 * 179.97438 * 16 15 13 36 36 H 1.09006 * 109.46981 * 84.27816 * 22 21 6 37 37 H 1.09004 * 109.46944 * 204.27214 * 22 21 6 38 38 H 1.08994 * 109.47258 * 324.27482 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2030 0.0000 4 6 3.5738 1.1956 0.0005 5 6 4.3527 2.4857 0.0000 6 6 4.2289 -0.0335 0.0005 7 7 5.6272 -0.0929 0.0005 8 6 6.3323 0.6268 -0.8947 9 8 5.7554 1.2543 -1.7575 10 6 7.8373 0.6518 -0.8235 11 1 8.2233 -0.3612 -0.9374 12 6 8.2747 1.2150 0.5301 13 6 8.3780 1.5221 -1.9286 14 1 7.6997 2.0081 -2.6142 15 6 9.7388 1.6978 -2.0645 16 7 10.5650 1.1056 -1.2300 17 14 10.4091 2.7772 -3.4339 18 1 9.8829 4.1571 -3.2790 19 1 11.8922 2.8017 -3.3639 20 1 9.9850 2.2302 -4.7478 21 6 3.4743 -1.1991 -0.0059 22 6 4.1682 -2.5367 -0.0128 23 7 2.1572 -1.1471 -0.0001 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6475 2.1376 -0.0004 28 1 4.4188 2.8698 -1.0180 29 1 3.8469 3.2158 0.6317 30 1 5.3559 2.3046 0.3858 31 1 6.0889 -0.6519 0.6449 32 1 7.8886 2.2280 0.6440 33 1 9.3633 1.2326 0.5817 34 1 7.8836 0.5853 1.3292 35 1 11.5222 1.2289 -1.3258 36 1 4.4261 -2.8175 1.0085 37 1 3.5039 -3.2884 -0.4394 38 1 5.0762 -2.4720 -0.6122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598805251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:04 Heat of formation + Delta-G solvation = -17.846280 kcal Electronic energy + Delta-G solvation = -19928.712838 eV Core-core repulsion = 16963.576905 eV Total energy + Delta-G solvation = -2965.135933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73178 -38.71878 -34.92398 -33.98611 -33.68086 -32.05730 -30.38232 -28.85406 -27.41545 -26.18649 -25.20063 -22.94482 -21.44814 -20.84712 -19.44282 -17.51447 -16.60884 -16.21852 -15.78350 -14.79994 -14.70479 -14.44290 -14.15045 -13.66192 -13.22636 -13.09154 -12.94183 -12.76278 -12.68018 -12.28500 -12.08877 -11.95451 -11.66449 -11.56608 -11.36434 -11.04466 -10.83219 -10.75786 -10.36920 -10.03681 -9.83129 -9.39646 -9.07220 -9.01233 -8.70055 -8.40065 -7.92204 -6.09473 -4.13298 1.23024 1.47342 3.32392 3.35407 3.40005 3.49663 3.68650 3.90930 4.35377 4.42554 4.78577 4.85381 5.18726 5.24247 5.36836 5.51950 5.56654 5.62004 5.64106 5.67168 5.76956 5.87657 5.99220 6.07528 6.14936 6.28565 6.40126 6.52127 6.60056 6.71593 6.72993 6.82209 7.17983 7.37378 7.66229 7.87007 8.02217 8.17372 8.28690 8.94771 9.04553 9.52630 10.98050 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033396 B = 0.005058 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.221380 B = 5534.695329 C = 5875.792844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.108 3.892 3 C -0.167 4.167 4 C -0.032 4.032 5 C -0.109 4.109 6 C 0.102 3.898 7 N -0.686 5.686 8 C 0.518 3.482 9 O -0.523 6.523 10 C 0.033 3.967 11 H 0.055 0.945 12 C -0.134 4.134 13 C -0.503 4.503 14 H 0.074 0.926 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.113 3.887 22 C -0.102 4.102 23 N -0.479 5.479 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.132 0.868 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.406 0.594 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.350 -2.909 6.231 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.030 4.030 3 C -0.188 4.188 4 C -0.041 4.041 5 C -0.165 4.165 6 C 0.005 3.995 7 N -0.335 5.335 8 C 0.309 3.691 9 O -0.396 6.396 10 C 0.012 3.988 11 H 0.072 0.928 12 C -0.192 4.192 13 C -0.542 4.542 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.028 4.028 22 C -0.159 4.159 23 N -0.190 5.190 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.243 0.757 32 H 0.051 0.949 33 H 0.114 0.886 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.952 -3.202 5.616 15.377 hybrid contribution 1.129 1.081 -0.379 1.608 sum -12.823 -2.121 5.237 14.013 Atomic orbital electron populations 1.20616 0.89098 1.02946 1.02726 1.21080 0.96657 0.88205 0.97024 1.21659 0.93516 0.99110 1.04481 1.20356 0.93664 0.95296 0.94810 1.20904 0.99514 0.92687 1.03441 1.18432 0.85329 0.93202 1.02541 1.43990 1.02812 1.49656 1.37050 1.22240 0.92060 0.76098 0.78692 1.90557 1.72299 1.42067 1.34722 1.18886 0.83539 0.99653 0.96773 0.92775 1.21771 1.05352 0.97941 0.94097 1.21060 0.91735 1.28846 1.12533 0.90794 1.24938 0.96812 0.95943 0.96391 1.69851 1.03025 1.43727 1.36857 0.86499 0.77336 0.80961 0.82314 1.20177 1.21329 1.20177 1.21213 0.89185 0.94791 0.97574 1.20647 1.00199 0.92342 1.02720 1.67257 1.08514 1.29272 1.13988 0.90809 0.90824 0.91057 0.85057 0.89075 0.92232 0.91125 0.75715 0.94915 0.88619 0.96840 0.92807 0.90643 0.90496 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.17 36.01 0.37 -0.61 16 2 C 0.11 1.54 6.78 -82.57 -0.56 0.98 16 3 C -0.17 -2.42 9.46 -39.47 -0.37 -2.79 16 4 C -0.03 -0.53 5.51 -104.14 -0.57 -1.11 16 5 C -0.11 -1.84 8.24 36.00 0.30 -1.54 16 6 C 0.10 1.75 5.90 -83.53 -0.49 1.26 16 7 N -0.69 -11.97 3.99 -9.76 -0.04 -12.00 16 8 C 0.52 11.23 5.29 -10.99 -0.06 11.18 16 9 O -0.52 -12.86 12.42 5.55 0.07 -12.79 16 10 C 0.03 0.77 2.63 -92.93 -0.24 0.53 16 11 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 12 C -0.13 -2.92 8.87 37.16 0.33 -2.59 16 13 C -0.50 -13.75 8.38 -34.44 -0.29 -14.04 16 14 H 0.07 2.13 6.75 -52.49 -0.35 1.78 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 16 N -0.90 -24.43 11.32 55.43 0.63 -23.81 16 17 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.11 1.79 6.80 -82.38 -0.56 1.23 16 22 C -0.10 -1.30 9.71 36.00 0.35 -0.95 16 23 N -0.48 -7.57 10.18 -5.59 -0.06 -7.62 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 28 H 0.09 1.71 7.10 -51.93 -0.37 1.34 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.31 6.19 -51.93 -0.32 0.98 16 31 H 0.41 5.99 8.22 -40.82 -0.34 5.66 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.32 6.07 -51.93 -0.32 2.01 16 34 H 0.01 0.23 7.68 -51.93 -0.40 -0.17 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.01 7.64 -51.93 -0.40 0.61 16 LS Contribution 312.91 15.07 4.72 4.72 Total: -1.00 -30.60 312.91 -7.04 -37.64 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.43 Total: 4.44 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.90 Total: -6.92 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.53 Total: -43.43 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.60 -7.04 -37.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598805251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.794 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds