Wall clock time and date at job start Mon Mar 30 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38273 * 119.53697 * 2 1 4 4 C 1.38504 * 119.22945 * 180.25721 * 3 2 1 5 5 C 1.50701 * 120.81604 * 179.75514 * 4 3 2 6 6 C 1.39272 * 118.36619 * 359.47936 * 4 3 2 7 7 N 1.39957 * 120.49191 * 180.27334 * 6 4 3 8 8 C 1.34777 * 120.00035 * 294.74929 * 7 6 4 9 9 O 1.21281 * 119.99926 * 3.40726 * 8 7 6 10 10 C 1.50698 * 119.99878 * 183.40754 * 8 7 6 11 11 H 1.09006 * 109.47172 * 300.00492 * 10 8 7 12 12 C 1.53003 * 109.47049 * 60.00180 * 10 8 7 13 13 C 1.50696 * 109.47000 * 180.02562 * 10 8 7 14 14 H 1.07997 * 120.00361 * 359.97438 * 13 10 8 15 15 C 1.37877 * 119.99795 * 180.02562 * 13 10 8 16 16 N 1.31516 * 120.00233 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99844 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46952 * 89.99979 * 17 15 13 19 19 H 1.48503 * 109.47035 * 209.99928 * 17 15 13 20 20 H 1.48502 * 109.47111 * 329.99871 * 17 15 13 21 21 C 1.38850 * 119.02121 * 0.25402 * 6 4 3 22 22 C 1.50700 * 119.66678 * 180.02562 * 21 6 4 23 23 N 1.31818 * 120.66382 * 0.02562 * 21 6 4 24 24 H 1.09004 * 109.47024 * 270.27427 * 1 2 3 25 25 H 1.08998 * 109.47584 * 30.27576 * 1 2 3 26 26 H 1.09001 * 109.47117 * 150.27924 * 1 2 3 27 27 H 1.08000 * 120.38559 * 0.02562 * 3 2 1 28 28 H 1.09007 * 109.47390 * 275.71263 * 5 4 3 29 29 H 1.08999 * 109.47437 * 155.71522 * 5 4 3 30 30 H 1.09000 * 109.47807 * 35.71559 * 5 4 3 31 31 H 0.97001 * 119.99431 * 114.74632 * 7 6 4 32 32 H 1.09003 * 109.47014 * 299.99816 * 12 10 8 33 33 H 1.08995 * 109.47169 * 59.99731 * 12 10 8 34 34 H 1.09005 * 109.47021 * 180.02562 * 12 10 8 35 35 H 0.97002 * 120.00119 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47379 * 84.16783 * 22 21 6 37 37 H 1.08998 * 109.47106 * 204.16558 * 22 21 6 38 38 H 1.09002 * 109.47341 * 324.16926 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5737 1.1956 -0.0054 5 6 4.3526 2.4857 -0.0111 6 6 4.2288 -0.0334 0.0004 7 7 5.6271 -0.0928 0.0011 8 6 6.3214 0.3619 -1.0609 9 8 5.7384 0.8789 -1.9903 10 6 7.8221 0.2280 -1.0933 11 1 8.2531 0.7640 -0.2477 12 6 8.2041 -1.2511 -1.0078 13 6 8.3506 0.8103 -2.3788 14 1 7.6681 1.2345 -3.1004 15 6 9.7055 0.8005 -2.6343 16 7 10.5365 0.2826 -1.7564 17 14 10.3606 1.5217 -4.2281 18 1 10.6596 2.9632 -4.0331 19 1 11.6018 0.8075 -4.6213 20 1 9.3412 1.3678 -5.2970 21 6 3.4742 -1.1989 0.0060 22 6 4.1681 -2.5367 0.0130 23 7 2.1571 -1.1471 0.0053 24 1 -0.3633 0.0049 1.0277 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6474 2.1376 0.0004 28 1 4.4488 2.8475 -1.0349 29 1 5.3440 2.3135 0.4080 30 1 3.8286 3.2293 0.5893 31 1 6.0965 -0.4612 0.7658 32 1 7.8218 -1.6719 -0.0778 33 1 7.7730 -1.7871 -1.8533 34 1 9.2896 -1.3479 -1.0309 35 1 11.4897 0.2760 -1.9360 36 1 4.4278 -2.8060 1.0368 37 1 3.5032 -3.2930 -0.4041 38 1 5.0752 -2.4787 -0.5886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598805252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:06 Heat of formation + Delta-G solvation = -19.544534 kcal Electronic energy + Delta-G solvation = -19884.592626 eV Core-core repulsion = 16919.383051 eV Total energy + Delta-G solvation = -2965.209575 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.67221 -38.64015 -34.93402 -33.96575 -33.70998 -32.03241 -30.34861 -28.84567 -27.49139 -26.16979 -25.17955 -22.90777 -21.43701 -20.82372 -19.45792 -17.44682 -16.79054 -16.10001 -15.74866 -14.82014 -14.71234 -14.41696 -13.97819 -13.72078 -13.17772 -13.05529 -13.01755 -12.83445 -12.63584 -12.39004 -12.11963 -11.93510 -11.66532 -11.57835 -11.42353 -11.04674 -10.77905 -10.75034 -10.33337 -10.02362 -9.77620 -9.29602 -9.04766 -8.97037 -8.67454 -8.40264 -8.10897 -6.08029 -4.11544 1.20247 1.43557 3.30881 3.36962 3.43563 3.55392 3.69691 3.88656 4.34435 4.44020 4.75955 4.81823 5.19034 5.25721 5.36695 5.49965 5.53024 5.57803 5.66554 5.70722 5.77618 5.84512 5.88536 6.10434 6.17635 6.26710 6.34488 6.49243 6.55985 6.69545 6.76218 6.85573 7.21688 7.40161 7.69181 7.89973 8.05023 8.15593 8.32231 8.97243 9.10527 9.54434 10.99483 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032234 B = 0.005111 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.445268 B = 5476.680318 C = 5900.708105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.117 3.883 3 C -0.174 4.174 4 C -0.027 4.027 5 C -0.111 4.111 6 C 0.096 3.904 7 N -0.693 5.693 8 C 0.521 3.479 9 O -0.528 6.528 10 C 0.032 3.968 11 H 0.054 0.946 12 C -0.134 4.134 13 C -0.502 4.502 14 H 0.074 0.926 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.126 3.874 22 C -0.102 4.102 23 N -0.483 5.483 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.132 0.868 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.405 0.595 32 H 0.013 0.987 33 H 0.032 0.968 34 H 0.095 0.905 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.499 -1.205 7.502 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.020 4.020 3 C -0.194 4.194 4 C -0.036 4.036 5 C -0.168 4.168 6 C 0.001 3.999 7 N -0.345 5.345 8 C 0.312 3.688 9 O -0.401 6.401 10 C 0.011 3.989 11 H 0.072 0.928 12 C -0.192 4.192 13 C -0.541 4.541 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.014 4.014 22 C -0.159 4.159 23 N -0.195 5.195 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.150 0.850 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.242 0.758 32 H 0.032 0.968 33 H 0.051 0.949 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.136 -1.628 6.800 15.771 hybrid contribution 1.124 0.996 -0.433 1.563 sum -13.013 -0.633 6.367 14.501 Atomic orbital electron populations 1.20639 0.89051 1.03194 1.02654 1.21133 0.96714 0.88238 0.95945 1.21678 0.93563 0.99133 1.05055 1.20493 0.93709 0.95510 0.93895 1.20767 0.99666 0.92885 1.03454 1.18338 0.85491 0.92714 1.03390 1.43894 1.02676 1.66279 1.21624 1.22240 0.91928 0.74828 0.79767 1.90555 1.71776 1.41888 1.35888 1.18885 0.83783 0.95901 1.00294 0.92837 1.21763 1.05260 0.95409 0.96728 1.21112 0.92116 1.38113 1.02715 0.90784 1.24936 0.96777 0.95312 0.97094 1.69863 1.03035 1.45474 1.35116 0.86453 0.78192 0.79033 0.83559 1.20642 1.21247 1.19755 1.21410 0.89116 0.95166 0.95669 1.20662 1.00324 0.92155 1.02789 1.67300 1.08654 1.29233 1.14300 0.90762 0.90960 0.90705 0.85044 0.89623 0.91118 0.91705 0.75808 0.96769 0.94902 0.88688 0.92894 0.90604 0.90611 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.16 36.01 0.37 -0.61 16 2 C 0.12 1.65 6.78 -82.57 -0.56 1.09 16 3 C -0.17 -2.45 9.46 -39.47 -0.37 -2.82 16 4 C -0.03 -0.44 5.59 -104.14 -0.58 -1.02 16 5 C -0.11 -1.72 8.64 36.01 0.31 -1.41 16 6 C 0.10 1.64 5.59 -83.54 -0.47 1.18 16 7 N -0.69 -12.06 3.57 -9.77 -0.03 -12.09 16 8 C 0.52 11.43 5.99 -10.99 -0.07 11.36 16 9 O -0.53 -13.31 13.85 5.56 0.08 -13.24 16 10 C 0.03 0.78 2.63 -92.92 -0.24 0.53 16 11 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 12 C -0.13 -2.95 8.87 37.16 0.33 -2.62 16 13 C -0.50 -13.87 8.38 -34.44 -0.29 -14.15 16 14 H 0.07 2.17 6.75 -52.49 -0.35 1.82 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 16 N -0.90 -24.57 11.32 55.43 0.63 -23.94 16 17 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 21 C 0.13 2.04 6.80 -82.37 -0.56 1.48 16 22 C -0.10 -1.39 9.83 36.01 0.35 -1.03 16 23 N -0.48 -7.70 10.18 -5.59 -0.06 -7.76 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.09 1.49 7.72 -51.93 -0.40 1.08 16 29 H 0.07 1.16 6.91 -51.93 -0.36 0.80 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 31 H 0.41 5.97 8.35 -40.82 -0.34 5.63 16 32 H 0.01 0.24 7.64 -51.93 -0.40 -0.15 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.17 7.65 -51.93 -0.40 0.77 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -31.21 316.33 -7.02 -38.23 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.50 Total: 4.03 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.88 Total: -6.48 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.54 Total: -43.79 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.21 -7.02 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598805252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.683 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds