Wall clock time and date at job start Mon Mar 30 2020 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38273 * 119.53697 * 2 1 4 4 C 1.38504 * 119.22945 * 180.25721 * 3 2 1 5 5 C 1.50701 * 120.81604 * 179.75514 * 4 3 2 6 6 C 1.39272 * 118.36619 * 359.47936 * 4 3 2 7 7 N 1.39957 * 120.49191 * 180.27334 * 6 4 3 8 8 C 1.34777 * 120.00035 * 294.74929 * 7 6 4 9 9 O 1.21281 * 119.99926 * 3.40726 * 8 7 6 10 10 C 1.50698 * 119.99878 * 183.40754 * 8 7 6 11 11 H 1.09006 * 109.47172 * 300.00492 * 10 8 7 12 12 C 1.53003 * 109.47049 * 60.00180 * 10 8 7 13 13 C 1.50696 * 109.47000 * 180.02562 * 10 8 7 14 14 H 1.07997 * 120.00361 * 359.97438 * 13 10 8 15 15 C 1.37877 * 119.99795 * 180.02562 * 13 10 8 16 16 N 1.31516 * 120.00233 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99844 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46952 * 89.99979 * 17 15 13 19 19 H 1.48503 * 109.47035 * 209.99928 * 17 15 13 20 20 H 1.48502 * 109.47111 * 329.99871 * 17 15 13 21 21 C 1.38850 * 119.02121 * 0.25402 * 6 4 3 22 22 C 1.50700 * 119.66678 * 180.02562 * 21 6 4 23 23 N 1.31818 * 120.66382 * 0.02562 * 21 6 4 24 24 H 1.09004 * 109.47024 * 270.27427 * 1 2 3 25 25 H 1.08998 * 109.47584 * 30.27576 * 1 2 3 26 26 H 1.09001 * 109.47117 * 150.27924 * 1 2 3 27 27 H 1.08000 * 120.38559 * 0.02562 * 3 2 1 28 28 H 1.09007 * 109.47390 * 275.71263 * 5 4 3 29 29 H 1.08999 * 109.47437 * 155.71522 * 5 4 3 30 30 H 1.09000 * 109.47807 * 35.71559 * 5 4 3 31 31 H 0.97001 * 119.99431 * 114.74632 * 7 6 4 32 32 H 1.09003 * 109.47014 * 299.99816 * 12 10 8 33 33 H 1.08995 * 109.47169 * 59.99731 * 12 10 8 34 34 H 1.09005 * 109.47021 * 180.02562 * 12 10 8 35 35 H 0.97002 * 120.00119 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47379 * 84.16783 * 22 21 6 37 37 H 1.08998 * 109.47106 * 204.16558 * 22 21 6 38 38 H 1.09002 * 109.47341 * 324.16926 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5737 1.1956 -0.0054 5 6 4.3526 2.4857 -0.0111 6 6 4.2288 -0.0334 0.0004 7 7 5.6271 -0.0928 0.0011 8 6 6.3214 0.3619 -1.0609 9 8 5.7384 0.8789 -1.9903 10 6 7.8221 0.2280 -1.0933 11 1 8.2531 0.7640 -0.2477 12 6 8.2041 -1.2511 -1.0078 13 6 8.3506 0.8103 -2.3788 14 1 7.6681 1.2345 -3.1004 15 6 9.7055 0.8005 -2.6343 16 7 10.5365 0.2826 -1.7564 17 14 10.3606 1.5217 -4.2281 18 1 10.6596 2.9632 -4.0331 19 1 11.6018 0.8075 -4.6213 20 1 9.3412 1.3678 -5.2970 21 6 3.4742 -1.1989 0.0060 22 6 4.1681 -2.5367 0.0130 23 7 2.1571 -1.1471 0.0053 24 1 -0.3633 0.0049 1.0277 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6474 2.1376 0.0004 28 1 4.4488 2.8475 -1.0349 29 1 5.3440 2.3135 0.4080 30 1 3.8286 3.2293 0.5893 31 1 6.0965 -0.4612 0.7658 32 1 7.8218 -1.6719 -0.0778 33 1 7.7730 -1.7871 -1.8533 34 1 9.2896 -1.3479 -1.0309 35 1 11.4897 0.2760 -1.9360 36 1 4.4278 -2.8060 1.0368 37 1 3.5032 -3.2930 -0.4041 38 1 5.0752 -2.4787 -0.5886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598805252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:05 Heat of formation + Delta-G solvation = -38.613012 kcal Electronic energy + Delta-G solvation = -19885.419497 eV Core-core repulsion = 16919.383051 eV Total energy + Delta-G solvation = -2966.036446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.95891 -40.20351 -36.37447 -35.78809 -35.02112 -33.42757 -32.15131 -29.88411 -28.67846 -27.44457 -27.11700 -24.58404 -22.64589 -22.13823 -21.03911 -18.93666 -18.28483 -17.82890 -17.45673 -16.51939 -15.89447 -15.80899 -15.57440 -15.12714 -14.54160 -14.45060 -14.24089 -14.07793 -13.86989 -13.71306 -13.46086 -13.11533 -13.00478 -12.91343 -12.75912 -12.62182 -12.58761 -12.53736 -12.21994 -12.03408 -11.14368 -11.05558 -10.75105 -10.50912 -10.28549 -10.12109 -9.39015 -8.16010 -6.26048 0.02674 0.23530 1.39887 1.41340 1.52514 1.84021 2.24068 2.47150 2.69546 3.14137 3.29389 3.64076 3.70366 4.12070 4.16188 4.40799 4.43180 4.55583 4.60166 4.65177 4.69039 4.74147 4.75221 4.83933 4.93888 4.95508 5.00968 5.13871 5.15371 5.21200 5.32002 5.48204 5.49916 5.73218 5.86715 5.96115 6.19156 6.61867 6.82739 6.99426 7.37785 7.48804 8.89672 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032234 B = 0.005111 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.445268 B = 5476.680318 C = 5900.708105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.115 3.885 3 C -0.174 4.174 4 C -0.043 4.043 5 C -0.105 4.105 6 C 0.063 3.937 7 N -0.670 5.670 8 C 0.530 3.470 9 O -0.567 6.567 10 C 0.029 3.971 11 H 0.046 0.954 12 C -0.121 4.121 13 C -0.527 4.527 14 H 0.048 0.952 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.953 3.047 18 H -0.274 1.274 19 H -0.275 1.275 20 H -0.281 1.281 21 C 0.118 3.882 22 C -0.099 4.099 23 N -0.499 5.499 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.164 0.836 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.418 0.582 32 H 0.054 0.946 33 H 0.022 0.978 34 H 0.072 0.928 35 H 0.265 0.735 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.991 -1.297 8.383 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.023 4.023 3 C -0.193 4.193 4 C -0.053 4.053 5 C -0.162 4.162 6 C -0.031 4.031 7 N -0.321 5.321 8 C 0.320 3.680 9 O -0.444 6.444 10 C 0.008 3.992 11 H 0.063 0.937 12 C -0.179 4.179 13 C -0.566 4.566 14 H 0.066 0.934 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.778 3.222 18 H -0.200 1.200 19 H -0.200 1.200 20 H -0.206 1.206 21 C -0.021 4.021 22 C -0.157 4.157 23 N -0.211 5.211 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.181 0.819 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.257 0.743 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.632 -1.744 7.732 17.527 hybrid contribution 1.478 1.029 -0.653 1.916 sum -14.154 -0.715 7.079 15.842 Atomic orbital electron populations 1.20766 0.85939 1.04298 1.04247 1.21887 0.98779 0.87750 0.93835 1.22026 0.92691 1.00674 1.03957 1.20753 0.95014 0.95302 0.94182 1.20703 0.99349 0.93719 1.02427 1.18538 0.84795 0.93822 1.05982 1.43403 1.03254 1.64838 1.20617 1.21727 0.91238 0.74744 0.80273 1.90532 1.72219 1.43971 1.37696 1.18800 0.85388 0.96702 0.98344 0.93671 1.21580 1.03678 0.94203 0.98442 1.21241 0.92345 1.39088 1.03908 0.93395 1.25538 0.96851 0.95563 0.99728 1.69937 1.03251 1.45552 1.36081 0.85641 0.77627 0.78746 0.80136 1.19972 1.20000 1.20587 1.21722 0.89523 0.95697 0.95168 1.20697 0.99616 0.91247 1.04103 1.67420 1.08374 1.30242 1.15083 0.88754 0.88740 0.90737 0.81865 0.91992 0.92776 0.88311 0.74314 0.92670 0.95874 0.90945 0.92572 0.88179 0.89949 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 10.16 71.24 0.72 -0.85 16 2 C 0.12 2.96 6.78 42.56 0.29 3.25 16 3 C -0.17 -4.48 9.46 22.34 0.21 -4.27 16 4 C -0.04 -1.37 5.59 -19.55 -0.11 -1.48 16 5 C -0.11 -3.24 8.64 71.24 0.62 -2.62 16 6 C 0.06 2.14 5.59 38.24 0.21 2.35 16 7 N -0.67 -23.24 3.57 -303.20 -1.08 -24.32 16 8 C 0.53 23.68 5.99 87.66 0.53 24.21 16 9 O -0.57 -29.58 13.85 -3.03 -0.04 -29.63 16 10 C 0.03 1.41 2.63 -12.29 -0.03 1.38 16 11 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 12 C -0.12 -5.33 8.87 71.98 0.64 -4.70 16 13 C -0.53 -29.94 8.38 25.60 0.21 -29.73 16 14 H 0.05 2.93 6.75 -2.91 -0.02 2.91 16 15 C 0.02 1.24 5.30 84.65 0.45 1.69 16 16 N -0.91 -50.06 11.32 21.45 0.24 -49.82 16 17 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 21 C 0.12 3.70 6.80 42.71 0.29 3.99 16 22 C -0.10 -2.57 9.83 71.24 0.70 -1.87 16 23 N -0.50 -15.06 10.18 -171.59 -1.75 -16.80 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.06 2.20 7.72 -2.38 -0.02 2.18 16 29 H 0.05 1.80 6.91 -2.39 -0.02 1.78 16 30 H 0.10 2.25 8.13 -2.39 -0.02 2.23 16 31 H 0.42 11.98 8.35 -92.71 -0.77 11.21 16 32 H 0.05 1.92 7.64 -2.39 -0.02 1.90 16 33 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 3.55 6.07 -2.38 -0.01 3.54 16 35 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.90 7.65 -2.39 -0.02 1.88 16 Total: -1.00 -68.48 316.33 4.42 -64.06 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.29 Total: 18.65 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 4.73 Total: -8.64 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -2.59 Total: -90.94 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.04 Total: -29.63 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.48 4.42 -64.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598805252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.445 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds