Wall clock time and date at job start Mon Mar 30 2020 06:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47414 * 2 1 4 4 C 1.34777 * 120.00295 * 84.53839 * 3 2 1 5 5 O 1.21281 * 119.99547 * 4.94670 * 4 3 2 6 6 C 1.50696 * 119.99689 * 184.94572 * 4 3 2 7 7 H 1.08993 * 109.47609 * 42.23693 * 6 4 3 8 8 C 1.53005 * 109.47095 * 282.23666 * 6 4 3 9 9 C 1.50700 * 109.46765 * 162.24102 * 6 4 3 10 10 H 1.07998 * 119.99968 * 359.97438 * 9 6 4 11 11 C 1.37877 * 120.00043 * 179.97438 * 9 6 4 12 12 N 1.31521 * 119.99821 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 120.00076 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47237 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46881 * 120.00433 * 13 11 9 16 16 H 1.48501 * 109.47064 * 240.00106 * 13 11 9 17 17 C 1.39411 * 119.99535 * 264.54151 * 3 2 1 18 18 N 1.32377 * 119.69299 * 275.31934 * 17 3 2 19 19 C 1.31912 * 121.63625 * 180.02562 * 18 17 3 20 20 C 1.38114 * 120.84495 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.30993 * 0.02562 * 20 19 18 22 22 C 1.38407 * 118.49596 * 359.72413 * 21 20 19 23 23 C 1.50700 * 120.44977 * 180.28448 * 22 21 20 24 24 H 1.08996 * 109.46475 * 68.32070 * 1 2 3 25 25 H 1.08994 * 109.47205 * 188.32053 * 1 2 3 26 26 H 1.08998 * 109.47152 * 308.32272 * 1 2 3 27 27 H 1.08997 * 109.47330 * 239.99382 * 2 1 3 28 28 H 1.09007 * 109.46899 * 119.99529 * 2 1 3 29 29 H 1.09001 * 109.46851 * 291.60540 * 8 6 4 30 30 H 1.09002 * 109.47228 * 171.60436 * 8 6 4 31 31 H 1.08994 * 109.46912 * 51.60474 * 8 6 4 32 32 H 0.97001 * 119.99470 * 179.97438 * 12 11 9 33 33 H 1.07992 * 119.57503 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.34546 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.75293 * 179.97438 * 21 20 19 36 36 H 1.08994 * 109.47297 * 275.89254 * 23 22 21 37 37 H 1.08997 * 109.46688 * 35.89539 * 23 22 21 38 38 H 1.09004 * 109.46651 * 155.89397 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1384 2.0536 1.1619 5 8 1.9283 1.4883 2.2141 6 6 2.5336 3.5078 1.1534 7 1 2.0002 4.0247 0.3558 8 6 4.0409 3.6253 0.9184 9 6 2.1818 4.1316 2.4794 10 1 1.7181 3.5348 3.2508 11 6 2.4520 5.4642 2.7077 12 7 3.0172 6.1909 1.7684 13 14 2.0153 6.2376 4.3511 14 1 1.3944 5.2145 5.2302 15 1 3.2470 6.7610 4.9947 16 1 1.0580 7.3520 4.1349 17 6 2.3591 2.0000 -1.2019 18 7 3.5679 1.8223 -1.7114 19 6 3.9310 2.3897 -2.8456 20 6 3.0550 3.1949 -3.5468 21 6 1.7778 3.4066 -3.0464 22 6 1.4246 2.7935 -1.8569 23 6 0.0473 2.9879 -1.2770 24 1 -0.3632 0.3796 -0.9550 25 1 -0.3633 -1.0168 0.1487 26 1 -0.3633 0.6372 0.8062 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 4.5751 3.2410 1.7873 30 1 4.3040 4.6717 0.7637 31 1 4.3173 3.0470 0.0369 32 1 3.2070 7.1285 1.9289 33 1 4.9259 2.2223 -3.2307 34 1 3.3606 3.6551 -4.4748 35 1 1.0741 4.0323 -3.5753 36 1 0.0234 3.9120 -0.6994 37 1 -0.6822 3.0454 -2.0848 38 1 -0.1953 2.1470 -0.6273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598844104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:01 Heat of formation + Delta-G solvation = 5.498315 kcal Electronic energy + Delta-G solvation = -20755.830799 eV Core-core repulsion = 17791.707163 eV Total energy + Delta-G solvation = -2964.123636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63637 -38.59362 -35.30760 -33.77435 -33.32771 -31.67722 -30.37883 -29.53847 -26.80880 -25.10556 -23.75910 -23.42961 -22.02397 -21.28619 -19.15282 -17.01064 -16.46530 -16.31098 -15.61684 -15.35427 -14.54819 -14.27666 -13.86411 -13.69617 -13.48117 -13.27163 -12.90084 -12.53847 -12.52676 -12.36532 -12.23145 -11.66271 -11.40946 -11.20075 -10.98974 -10.82061 -10.66545 -10.60403 -10.18709 -9.97666 -9.58195 -9.40206 -8.92384 -8.82788 -8.46585 -8.33221 -8.19893 -6.01039 -4.04138 1.26674 1.49453 3.31953 3.32821 3.40166 3.48543 3.60247 3.94520 4.46757 4.78740 4.96475 5.11516 5.18215 5.22706 5.32248 5.36855 5.51169 5.59427 5.66003 5.84196 5.88336 5.99017 6.00159 6.26212 6.28484 6.37119 6.39948 6.48465 6.70836 6.83473 7.00253 7.06581 7.13746 7.51716 7.79450 7.93825 8.07487 8.23945 8.40424 9.01961 9.11556 9.60319 11.06770 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.007947 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.648974 B = 3522.588986 C = 4141.129347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.579 5.579 4 C 0.534 3.466 5 O -0.531 6.531 6 C 0.033 3.967 7 H 0.049 0.951 8 C -0.132 4.132 9 C -0.501 4.501 10 H 0.072 0.928 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.362 3.638 18 N -0.481 5.481 19 C 0.102 3.898 20 C -0.172 4.172 21 C -0.073 4.073 22 C -0.115 4.115 23 C -0.126 4.126 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.154 0.846 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 -6.577 -12.683 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.314 5.314 4 C 0.327 3.673 5 O -0.404 6.404 6 C 0.012 3.988 7 H 0.066 0.934 8 C -0.190 4.190 9 C -0.540 4.540 10 H 0.090 0.910 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.211 1.211 17 C 0.136 3.864 18 N -0.192 5.192 19 C -0.056 4.056 20 C -0.192 4.192 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.182 4.182 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.172 0.828 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.654 -7.257 -11.612 13.948 hybrid contribution -0.577 1.109 0.262 1.277 sum -3.231 -6.148 -11.350 13.306 Atomic orbital electron populations 1.22282 0.96232 1.02056 1.02274 1.21327 0.94003 0.82529 1.02691 1.45655 1.66977 1.14044 1.04690 1.22149 0.73440 0.90818 0.80937 1.90533 1.49249 1.70413 1.30220 1.18905 0.95147 0.84918 0.99857 0.93358 1.21761 0.95997 1.03285 0.97987 1.21144 1.39686 0.94578 0.98590 0.91015 1.24935 0.95063 0.97035 0.97035 1.69927 1.42976 1.07491 1.32874 0.86431 0.78080 0.79042 0.83923 1.19542 1.21012 1.21065 1.17851 0.88208 0.92879 0.87482 1.67320 1.17338 1.22648 1.11853 1.22465 0.99496 0.93709 0.89958 1.22072 0.94781 1.00606 1.01759 1.21362 0.96537 0.97288 0.94711 1.20934 0.97882 0.97735 0.95361 1.21021 0.91485 1.04580 1.01153 0.92422 0.91848 0.91563 0.91263 0.89971 0.94845 0.89690 0.95601 0.93094 0.82847 0.84865 0.84783 0.89784 0.91692 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 8.66 37.16 0.32 -2.04 16 2 C 0.12 1.90 6.11 -4.04 -0.02 1.87 16 3 N -0.58 -11.42 1.74 -115.38 -0.20 -11.62 16 4 C 0.53 12.91 6.69 -10.99 -0.07 12.83 16 5 O -0.53 -14.15 15.28 5.56 0.08 -14.06 16 6 C 0.03 0.86 1.92 -92.92 -0.18 0.68 16 7 H 0.05 1.29 6.06 -51.93 -0.31 0.98 16 8 C -0.13 -3.39 8.74 37.16 0.32 -3.07 16 9 C -0.50 -14.53 8.34 -34.44 -0.29 -14.81 16 10 H 0.07 2.18 6.90 -52.49 -0.36 1.82 16 11 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 12 N -0.89 -25.53 11.42 55.43 0.63 -24.90 16 13 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.36 6.63 4.23 -154.69 -0.65 5.97 16 18 N -0.48 -8.54 8.79 -12.37 -0.11 -8.65 16 19 C 0.10 1.43 11.18 -17.56 -0.20 1.24 16 20 C -0.17 -2.12 10.11 -39.42 -0.40 -2.52 16 21 C -0.07 -0.97 9.87 -39.31 -0.39 -1.36 16 22 C -0.11 -1.85 5.06 -104.28 -0.53 -2.38 16 23 C -0.13 -1.88 9.34 36.01 0.34 -1.55 16 24 H 0.06 0.72 6.88 -51.93 -0.36 0.37 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.06 7.85 -51.93 -0.41 0.66 16 27 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 28 H 0.08 1.42 7.53 -51.93 -0.39 1.03 16 29 H 0.03 0.87 8.12 -51.93 -0.42 0.45 16 30 H 0.08 2.32 6.34 -51.93 -0.33 1.99 16 31 H 0.03 0.60 5.61 -51.93 -0.29 0.31 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.08 1.42 7.68 -51.93 -0.40 1.03 16 37 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 38 H 0.08 1.26 3.80 -51.93 -0.20 1.06 16 LS Contribution 307.15 15.07 4.63 4.63 Total: -1.00 -32.79 307.15 -6.96 -39.75 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.13 Total: 1.35 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.84 Total: -3.51 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.32 Total: -45.16 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.06 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.79 -6.96 -39.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598844104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.249 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds