Wall clock time and date at job start Mon Mar 30 2020 06:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47414 * 2 1 4 4 C 1.34777 * 120.00295 * 84.53839 * 3 2 1 5 5 O 1.21281 * 119.99547 * 4.94670 * 4 3 2 6 6 C 1.50696 * 119.99689 * 184.94572 * 4 3 2 7 7 H 1.08993 * 109.47609 * 42.23693 * 6 4 3 8 8 C 1.53005 * 109.47095 * 282.23666 * 6 4 3 9 9 C 1.50700 * 109.46765 * 162.24102 * 6 4 3 10 10 H 1.07998 * 119.99968 * 359.97438 * 9 6 4 11 11 C 1.37877 * 120.00043 * 179.97438 * 9 6 4 12 12 N 1.31521 * 119.99821 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 120.00076 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47237 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46881 * 120.00433 * 13 11 9 16 16 H 1.48501 * 109.47064 * 240.00106 * 13 11 9 17 17 C 1.39411 * 119.99535 * 264.54151 * 3 2 1 18 18 N 1.32377 * 119.69299 * 275.31934 * 17 3 2 19 19 C 1.31912 * 121.63625 * 180.02562 * 18 17 3 20 20 C 1.38114 * 120.84495 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.30993 * 0.02562 * 20 19 18 22 22 C 1.38407 * 118.49596 * 359.72413 * 21 20 19 23 23 C 1.50700 * 120.44977 * 180.28448 * 22 21 20 24 24 H 1.08996 * 109.46475 * 68.32070 * 1 2 3 25 25 H 1.08994 * 109.47205 * 188.32053 * 1 2 3 26 26 H 1.08998 * 109.47152 * 308.32272 * 1 2 3 27 27 H 1.08997 * 109.47330 * 239.99382 * 2 1 3 28 28 H 1.09007 * 109.46899 * 119.99529 * 2 1 3 29 29 H 1.09001 * 109.46851 * 291.60540 * 8 6 4 30 30 H 1.09002 * 109.47228 * 171.60436 * 8 6 4 31 31 H 1.08994 * 109.46912 * 51.60474 * 8 6 4 32 32 H 0.97001 * 119.99470 * 179.97438 * 12 11 9 33 33 H 1.07992 * 119.57503 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.34546 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.75293 * 179.97438 * 21 20 19 36 36 H 1.08994 * 109.47297 * 275.89254 * 23 22 21 37 37 H 1.08997 * 109.46688 * 35.89539 * 23 22 21 38 38 H 1.09004 * 109.46651 * 155.89397 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1384 2.0536 1.1619 5 8 1.9283 1.4883 2.2141 6 6 2.5336 3.5078 1.1534 7 1 2.0002 4.0247 0.3558 8 6 4.0409 3.6253 0.9184 9 6 2.1818 4.1316 2.4794 10 1 1.7181 3.5348 3.2508 11 6 2.4520 5.4642 2.7077 12 7 3.0172 6.1909 1.7684 13 14 2.0153 6.2376 4.3511 14 1 1.3944 5.2145 5.2302 15 1 3.2470 6.7610 4.9947 16 1 1.0580 7.3520 4.1349 17 6 2.3591 2.0000 -1.2019 18 7 3.5679 1.8223 -1.7114 19 6 3.9310 2.3897 -2.8456 20 6 3.0550 3.1949 -3.5468 21 6 1.7778 3.4066 -3.0464 22 6 1.4246 2.7935 -1.8569 23 6 0.0473 2.9879 -1.2770 24 1 -0.3632 0.3796 -0.9550 25 1 -0.3633 -1.0168 0.1487 26 1 -0.3633 0.6372 0.8062 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 4.5751 3.2410 1.7873 30 1 4.3040 4.6717 0.7637 31 1 4.3173 3.0470 0.0369 32 1 3.2070 7.1285 1.9289 33 1 4.9259 2.2223 -3.2307 34 1 3.3606 3.6551 -4.4748 35 1 1.0741 4.0323 -3.5753 36 1 0.0234 3.9120 -0.6994 37 1 -0.6822 3.0454 -2.0848 38 1 -0.1953 2.1470 -0.6273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598844104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:01 Heat of formation + Delta-G solvation = -13.987224 kcal Electronic energy + Delta-G solvation = -20756.675755 eV Core-core repulsion = 17791.707163 eV Total energy + Delta-G solvation = -2964.968592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.01004 -40.15874 -36.87103 -35.85564 -34.50029 -33.18377 -32.08107 -30.95747 -28.00973 -27.29538 -25.38669 -24.69756 -23.26431 -22.91831 -20.64340 -18.62185 -18.37521 -17.71875 -17.30536 -16.71558 -16.33016 -15.67662 -15.33868 -15.03456 -15.01059 -14.84272 -14.40663 -13.98419 -13.86231 -13.69395 -13.51760 -13.39191 -13.01802 -12.82161 -12.73229 -12.58937 -12.35279 -12.26192 -12.10647 -11.96668 -11.08834 -10.86725 -10.62402 -10.60851 -10.41673 -9.81960 -9.60984 -8.18311 -6.29271 0.11172 0.39152 1.36765 1.38739 1.52210 1.70750 1.91433 2.41917 2.80492 3.10895 3.55691 3.83048 3.97127 4.11312 4.16236 4.18907 4.29922 4.42571 4.47699 4.61039 4.64570 4.73366 4.80466 4.84263 4.90539 4.94511 4.99974 5.13375 5.26319 5.27289 5.33638 5.39592 5.54082 5.65520 5.79736 5.82518 6.09929 6.50922 6.77410 7.06859 7.27784 7.40210 8.88541 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.007947 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.648974 B = 3522.588986 C = 4141.129347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.111 3.889 3 N -0.569 5.569 4 C 0.534 3.466 5 O -0.571 6.571 6 C 0.036 3.964 7 H 0.041 0.959 8 C -0.116 4.116 9 C -0.531 4.531 10 H 0.047 0.953 11 C 0.022 3.978 12 N -0.909 5.909 13 Si 0.957 3.043 14 H -0.278 1.278 15 H -0.275 1.275 16 H -0.269 1.269 17 C 0.323 3.677 18 N -0.513 5.513 19 C 0.092 3.908 20 C -0.155 4.155 21 C -0.072 4.072 22 C -0.129 4.129 23 C -0.122 4.122 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.037 0.963 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.013 0.987 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.168 0.832 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 -6.024 -15.129 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.011 4.011 3 N -0.301 5.301 4 C 0.325 3.675 5 O -0.448 6.448 6 C 0.015 3.985 7 H 0.059 0.941 8 C -0.174 4.174 9 C -0.569 4.569 10 H 0.065 0.935 11 C -0.177 4.177 12 N -0.548 5.548 13 Si 0.782 3.218 14 H -0.203 1.203 15 H -0.201 1.201 16 H -0.194 1.194 17 C 0.098 3.902 18 N -0.225 5.225 19 C -0.066 4.066 20 C -0.174 4.174 21 C -0.098 4.098 22 C -0.134 4.134 23 C -0.179 4.179 24 H 0.092 0.908 25 H 0.110 0.890 26 H 0.056 0.944 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.201 0.799 34 H 0.195 0.805 35 H 0.185 0.815 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.920 -6.715 -14.112 15.899 hybrid contribution -0.442 0.940 0.846 1.340 sum -3.361 -5.775 -13.266 14.854 Atomic orbital electron populations 1.22188 0.94185 1.03305 1.02037 1.21575 0.95711 0.80840 1.02928 1.45420 1.65541 1.14859 1.04230 1.21684 0.73551 0.90376 0.81844 1.90496 1.51418 1.70964 1.31953 1.18724 0.95033 0.86480 0.98261 0.94100 1.21564 0.95753 1.02203 0.97866 1.21257 1.40844 0.95306 0.99512 0.93463 1.25615 0.94660 0.97139 1.00321 1.69997 1.42760 1.07860 1.34161 0.85522 0.78274 0.78180 0.79814 1.20300 1.20099 1.19421 1.18024 0.89483 0.95114 0.87533 1.67224 1.17332 1.24146 1.13780 1.23117 1.01179 0.93322 0.89014 1.22563 0.93646 0.98665 1.02505 1.21831 0.97769 0.96612 0.93596 1.21100 0.97800 0.97917 0.96552 1.20993 0.92389 1.02646 1.01899 0.90790 0.88986 0.94379 0.88968 0.91623 0.96791 0.91356 0.93644 0.92560 0.79885 0.80481 0.81452 0.92515 0.88046 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 8.66 71.98 0.62 -3.72 16 2 C 0.11 3.63 6.11 86.38 0.53 4.15 16 3 N -0.57 -22.87 1.74 -637.34 -1.11 -23.98 16 4 C 0.53 26.92 6.69 87.66 0.59 27.50 16 5 O -0.57 -32.14 15.28 -3.03 -0.05 -32.19 16 6 C 0.04 1.96 1.92 -12.29 -0.02 1.94 16 7 H 0.04 2.26 6.06 -2.39 -0.01 2.25 16 8 C -0.12 -6.11 8.74 71.98 0.63 -5.48 16 9 C -0.53 -31.94 8.34 25.60 0.21 -31.73 16 10 H 0.05 3.02 6.90 -2.91 -0.02 3.00 16 11 C 0.02 1.27 5.30 84.65 0.45 1.72 16 12 N -0.91 -52.24 11.42 21.45 0.24 -51.99 16 13 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 14 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 C 0.32 11.66 4.23 132.90 0.56 12.23 16 18 N -0.51 -17.65 8.79 -193.04 -1.70 -19.34 16 19 C 0.09 2.32 11.18 84.65 0.95 3.27 16 20 C -0.15 -3.15 10.11 22.37 0.23 -2.92 16 21 C -0.07 -1.68 9.87 22.44 0.22 -1.45 16 22 C -0.13 -3.99 5.06 -19.64 -0.10 -4.09 16 23 C -0.12 -3.59 9.34 71.24 0.67 -2.92 16 24 H 0.07 1.76 6.88 -2.39 -0.02 1.74 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.25 7.85 -2.39 -0.02 1.23 16 27 H 0.09 2.57 8.00 -2.39 -0.02 2.55 16 28 H 0.07 2.35 7.53 -2.38 -0.02 2.33 16 29 H 0.01 0.72 8.12 -2.39 -0.02 0.70 16 30 H 0.07 3.79 6.34 -2.39 -0.02 3.78 16 31 H 0.04 2.16 5.61 -2.39 -0.01 2.15 16 32 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 34 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 36 H 0.06 1.96 7.68 -2.39 -0.02 1.94 16 37 H 0.10 2.12 8.13 -2.39 -0.02 2.10 16 38 H 0.07 2.18 3.80 -2.38 -0.01 2.17 16 Total: -1.00 -74.09 307.15 6.00 -68.09 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.06 Total: 13.21 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.53 Total: -1.51 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -2.56 Total: -95.31 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.05 Total: -32.19 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.09 6.00 -68.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598844104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.104 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds