Wall clock time and date at job start Mon Mar 30 2020 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47455 * 2 1 4 4 C 1.34770 * 120.00273 * 275.59884 * 3 2 1 5 5 O 1.21285 * 120.00128 * 4.14796 * 4 3 2 6 6 C 1.50706 * 120.00335 * 184.15052 * 4 3 2 7 7 H 1.08994 * 109.46692 * 324.21566 * 6 4 3 8 8 C 1.52999 * 109.46946 * 84.22077 * 6 4 3 9 9 C 1.50696 * 109.47142 * 204.21827 * 6 4 3 10 10 H 1.08003 * 120.00174 * 359.97438 * 9 6 4 11 11 C 1.37872 * 120.00162 * 180.02562 * 9 6 4 12 12 N 1.31515 * 120.00205 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 120.00172 * 180.02562 * 11 9 6 14 14 H 1.48509 * 109.47166 * 89.99850 * 13 11 9 15 15 H 1.48503 * 109.46976 * 209.99821 * 13 11 9 16 16 H 1.48500 * 109.47084 * 329.99708 * 13 11 9 17 17 C 1.39410 * 120.00061 * 95.60292 * 3 2 1 18 18 N 1.32371 * 119.69903 * 88.73276 * 17 3 2 19 19 C 1.31913 * 121.63784 * 179.97438 * 18 17 3 20 20 C 1.38112 * 120.84321 * 359.97438 * 19 18 17 21 21 C 1.38786 * 119.31356 * 0.02562 * 20 19 18 22 22 C 1.38401 * 118.49668 * 359.74805 * 21 20 19 23 23 C 1.50694 * 120.45494 * 180.26706 * 22 21 20 24 24 H 1.08997 * 109.46766 * 53.85957 * 1 2 3 25 25 H 1.09001 * 109.47408 * 173.86703 * 1 2 3 26 26 H 1.09006 * 109.46756 * 293.86206 * 1 2 3 27 27 H 1.09002 * 109.47041 * 120.00443 * 2 1 3 28 28 H 1.09003 * 109.46623 * 239.99415 * 2 1 3 29 29 H 1.08993 * 109.47512 * 66.04345 * 8 6 4 30 30 H 1.09001 * 109.46831 * 186.05038 * 8 6 4 31 31 H 1.08997 * 109.47110 * 306.04036 * 8 6 4 32 32 H 0.96999 * 120.00768 * 179.97438 * 12 11 9 33 33 H 1.07995 * 119.57426 * 179.97438 * 19 18 17 34 34 H 1.08008 * 120.34011 * 180.02562 * 20 19 18 35 35 H 1.08007 * 120.75458 * 180.02562 * 21 20 19 36 36 H 1.09004 * 109.47442 * 275.46528 * 23 22 21 37 37 H 1.09002 * 109.47228 * 35.46184 * 23 22 21 38 38 H 1.09000 * 109.47947 * 155.46193 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1357 2.0544 -1.1615 5 8 1.7666 1.5443 -2.1982 6 6 2.7256 3.4412 -1.1725 7 1 2.4247 3.9711 -0.2688 8 6 4.2518 3.3457 -1.2236 9 6 2.2283 4.1891 -2.3825 10 1 1.5530 3.7082 -3.0748 11 6 2.6363 5.4869 -2.6066 12 7 3.4590 6.0723 -1.7641 13 14 2.0193 6.4142 -4.1062 14 1 0.7645 7.1308 -3.7635 15 1 3.0469 7.3949 -4.5392 16 1 1.7560 5.4542 -5.2082 17 6 2.3619 1.9990 1.2016 18 7 3.5960 1.8871 1.6672 19 6 3.9626 2.4562 2.7994 20 6 3.0641 3.1951 3.5439 21 6 1.7601 3.3366 3.0903 22 6 1.4069 2.7318 1.8966 23 6 0.0048 2.8620 1.3600 24 1 -0.3633 0.6061 -0.8299 25 1 -0.3634 -1.0218 -0.1098 26 1 -0.3633 0.4158 0.9399 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 4.5571 2.9125 -2.1759 30 1 4.6817 4.3424 -1.1232 31 1 4.6039 2.7145 -0.4077 32 1 3.7464 6.9852 -1.9218 33 1 4.9782 2.3428 3.1485 34 1 3.3732 3.6579 4.4696 35 1 1.0385 3.9096 3.6538 36 1 -0.6310 2.1035 1.8168 37 1 -0.3842 3.8524 1.5963 38 1 0.0152 2.7243 0.2788 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598844106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:03 Heat of formation + Delta-G solvation = -17.347733 kcal Electronic energy + Delta-G solvation = -20711.554864 eV Core-core repulsion = 17746.440549 eV Total energy + Delta-G solvation = -2965.114315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.97205 -40.16365 -36.84909 -35.84328 -34.50082 -33.13881 -32.12422 -30.91763 -28.01446 -27.30938 -25.39997 -24.68617 -23.25857 -22.89800 -20.64466 -18.62601 -18.35186 -17.72036 -17.30694 -16.72981 -16.30639 -15.72797 -15.30394 -15.07635 -14.92008 -14.77939 -14.41132 -14.00188 -13.74625 -13.66908 -13.47945 -13.40735 -13.01715 -12.83775 -12.73230 -12.64747 -12.48206 -12.29404 -12.09973 -11.96998 -11.12245 -10.80930 -10.65356 -10.61059 -10.44599 -9.80758 -9.60424 -8.18240 -6.30140 0.10821 0.39622 1.37472 1.39107 1.50918 1.72505 1.91785 2.41619 2.80848 3.10588 3.55536 3.83282 3.94035 4.11019 4.15838 4.20551 4.31993 4.43763 4.47719 4.60954 4.65461 4.69717 4.79675 4.80603 4.92964 4.97141 5.01606 5.15026 5.25416 5.29315 5.32349 5.37403 5.54777 5.64337 5.79306 5.83094 6.09758 6.51426 6.75855 7.07122 7.28365 7.39833 8.88256 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.007988 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.231860 B = 3504.484283 C = 4094.398532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.113 3.887 3 N -0.567 5.567 4 C 0.534 3.466 5 O -0.571 6.571 6 C 0.041 3.959 7 H 0.030 0.970 8 C -0.112 4.112 9 C -0.530 4.530 10 H 0.046 0.954 11 C 0.022 3.978 12 N -0.909 5.909 13 Si 0.958 3.042 14 H -0.268 1.268 15 H -0.274 1.274 16 H -0.279 1.279 17 C 0.322 3.678 18 N -0.512 5.512 19 C 0.092 3.908 20 C -0.155 4.155 21 C -0.072 4.072 22 C -0.133 4.133 23 C -0.107 4.107 24 H 0.035 0.965 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.015 0.985 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.266 0.734 33 H 0.183 0.817 34 H 0.178 0.822 35 H 0.170 0.830 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 -6.114 15.060 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.008 4.008 3 N -0.299 5.299 4 C 0.326 3.674 5 O -0.448 6.448 6 C 0.019 3.981 7 H 0.048 0.952 8 C -0.171 4.171 9 C -0.569 4.569 10 H 0.065 0.935 11 C -0.178 4.178 12 N -0.548 5.548 13 Si 0.783 3.217 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.204 1.204 17 C 0.097 3.903 18 N -0.223 5.223 19 C -0.067 4.067 20 C -0.174 4.174 21 C -0.098 4.098 22 C -0.137 4.137 23 C -0.164 4.164 24 H 0.055 0.945 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.200 0.800 34 H 0.195 0.805 35 H 0.187 0.813 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.337 -6.738 14.019 15.908 hybrid contribution -0.522 0.925 -0.746 1.298 sum -3.859 -5.813 13.273 14.995 Atomic orbital electron populations 1.22174 0.94202 1.03236 1.02071 1.21565 0.95845 0.80601 1.02757 1.45424 1.65394 1.14868 1.04240 1.21637 0.75448 0.88664 0.81670 1.90500 1.50409 1.70865 1.33058 1.18644 0.94099 0.87401 0.97906 0.95245 1.21478 0.96089 1.01694 0.97798 1.21194 1.28789 0.98191 1.08695 0.93535 1.25634 0.94966 0.97815 0.99377 1.69985 1.33681 1.13679 1.37460 0.85561 0.78533 0.78135 0.79487 1.19337 1.19892 1.20388 1.18056 0.89232 0.95363 0.87631 1.67237 1.17905 1.22215 1.14980 1.23113 1.01449 0.93296 0.88802 1.22564 0.93432 0.98942 1.02483 1.21820 0.97759 0.96486 0.93705 1.21129 0.97860 0.98145 0.96564 1.20808 0.91687 1.03628 1.00292 0.94537 0.89195 0.90933 0.88966 0.91783 0.96574 0.91207 0.93946 0.92527 0.80039 0.80511 0.81296 0.88480 0.89976 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 9.18 71.98 0.66 -3.71 16 2 C 0.11 3.72 6.03 86.38 0.52 4.24 16 3 N -0.57 -22.89 1.72 -637.36 -1.09 -23.99 16 4 C 0.53 27.01 5.94 87.66 0.52 27.53 16 5 O -0.57 -32.02 15.42 -3.04 -0.05 -32.06 16 6 C 0.04 2.23 1.98 -12.29 -0.02 2.21 16 7 H 0.03 1.68 6.79 -2.39 -0.02 1.66 16 8 C -0.11 -6.00 8.85 71.98 0.64 -5.36 16 9 C -0.53 -31.98 8.33 25.60 0.21 -31.76 16 10 H 0.05 2.96 7.01 -2.91 -0.02 2.94 16 11 C 0.02 1.24 5.30 84.65 0.45 1.69 16 12 N -0.91 -52.65 11.39 21.45 0.24 -52.41 16 13 Si 0.96 45.66 29.54 68.60 2.03 47.68 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 16 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 17 C 0.32 11.72 4.44 132.90 0.59 12.30 16 18 N -0.51 -17.92 9.16 -193.04 -1.77 -19.69 16 19 C 0.09 2.38 11.18 84.65 0.95 3.32 16 20 C -0.15 -3.21 10.10 22.37 0.23 -2.98 16 21 C -0.07 -1.65 9.87 22.44 0.22 -1.43 16 22 C -0.13 -4.07 5.47 -19.64 -0.11 -4.17 16 23 C -0.11 -3.04 8.56 71.23 0.61 -2.43 16 24 H 0.04 1.22 8.06 -2.39 -0.02 1.21 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 1.73 5.91 -2.38 -0.01 1.72 16 27 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 28 H 0.06 2.28 7.66 -2.39 -0.02 2.26 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 3.93 6.26 -2.39 -0.01 3.91 16 31 H 0.04 2.06 6.77 -2.39 -0.02 2.04 16 32 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.18 3.48 8.06 -2.91 -0.02 3.45 16 34 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.10 2.13 6.83 -2.39 -0.02 2.12 16 37 H 0.08 2.08 8.13 -2.39 -0.02 2.06 16 38 H 0.04 1.46 6.20 -2.39 -0.01 1.45 16 Total: -1.00 -74.44 310.16 5.88 -68.56 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.05 Total: 12.46 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 5.46 Total: -0.56 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -2.62 Total: -96.08 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.05 Total: -32.06 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -74.44 5.88 -68.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598844106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.217 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds