Wall clock time and date at job start Mon Mar 30 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47058 * 2 1 4 4 C 1.38403 * 120.44749 * 265.01578 * 3 2 1 5 5 C 1.38793 * 118.49078 * 179.97438 * 4 3 2 6 6 C 1.38117 * 119.31408 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.57869 * 180.02562 * 6 5 4 8 8 N 1.31906 * 120.84526 * 0.02562 * 6 5 4 9 9 C 1.32384 * 121.63456 * 0.02562 * 8 6 5 10 10 N 1.39410 * 119.69180 * 179.97438 * 9 8 6 11 11 C 1.34781 * 120.00106 * 0.02562 * 10 9 8 12 12 O 1.21276 * 120.00050 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.99762 * 179.97438 * 11 10 9 14 14 H 1.09005 * 109.47482 * 300.00311 * 13 11 10 15 15 C 1.52999 * 109.47456 * 60.00077 * 13 11 10 16 16 C 1.50703 * 109.47243 * 180.02562 * 13 11 10 17 17 H 1.08000 * 119.99567 * 359.97438 * 16 13 11 18 18 C 1.37876 * 120.00090 * 179.97438 * 16 13 11 19 19 N 1.31511 * 120.00096 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99597 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47260 * 60.00520 * 20 18 16 22 22 H 1.48501 * 109.46675 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47015 * 299.99892 * 20 18 16 24 24 H 1.08998 * 109.46733 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47074 * 300.00349 * 1 2 3 26 26 H 1.08999 * 109.46544 * 59.99965 * 1 2 3 27 27 H 1.08998 * 109.47074 * 239.99651 * 2 1 3 28 28 H 1.09004 * 109.46967 * 120.00165 * 2 1 3 29 29 H 1.07999 * 120.75355 * 0.02562 * 4 3 2 30 30 H 1.08000 * 120.34182 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.46870 * 269.99918 * 7 6 5 32 32 H 1.09005 * 109.46755 * 30.00305 * 7 6 5 33 33 H 1.08999 * 109.46917 * 149.99621 * 7 6 5 34 34 H 0.97005 * 119.99835 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.47014 * 59.99637 * 15 13 11 36 36 H 1.09000 * 109.47330 * 179.97438 * 15 13 11 37 37 H 1.09003 * 109.47199 * 300.00211 * 15 13 11 38 38 H 0.97001 * 119.99821 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3639 2.0475 -1.1887 5 6 2.8219 3.3569 -1.1415 6 6 2.9319 3.9912 0.0805 7 6 3.4280 5.4130 0.1386 8 7 2.6085 3.3683 1.1973 9 6 2.1689 2.1196 1.1937 10 7 1.8390 1.5001 2.3983 11 6 1.9677 2.1726 3.5593 12 8 2.3700 3.3167 3.5560 13 6 1.6105 1.5031 4.8612 14 1 0.5612 1.2084 4.8424 15 6 2.4851 0.2626 5.0537 16 6 1.8418 2.4630 5.9997 17 1 2.2110 3.4582 5.8004 18 6 1.5821 2.0708 7.2958 19 7 1.1331 0.8588 7.5385 20 14 1.8696 3.2605 8.7069 21 1 1.0211 4.4647 8.5198 22 1 1.5175 2.6008 9.9899 23 1 3.2993 3.6613 8.7330 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 2.2676 1.5297 -2.1315 30 1 3.0894 3.8744 -2.0509 31 1 4.5130 5.4152 0.2423 32 1 3.1495 5.9326 -0.7783 33 1 2.9801 5.9194 0.9936 34 1 1.5162 0.5854 2.4008 35 1 3.5344 0.5573 5.0725 36 1 2.2271 -0.2213 5.9957 37 1 2.3175 -0.4316 4.2302 38 1 0.9507 0.5827 8.4504 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598859709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:07 Heat of formation + Delta-G solvation = -8.112545 kcal Electronic energy + Delta-G solvation = -19759.054562 eV Core-core repulsion = 16794.340715 eV Total energy + Delta-G solvation = -2964.713847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58696 -38.44408 -35.38796 -33.92982 -33.66819 -31.23414 -31.05359 -30.02809 -26.99588 -25.16158 -24.04081 -23.16606 -22.04118 -20.99575 -19.43899 -17.38818 -16.43731 -16.02901 -15.49232 -15.24315 -14.80049 -14.40244 -14.07694 -13.80392 -13.73372 -13.27884 -12.89101 -12.80240 -12.55813 -12.29733 -12.00799 -11.90706 -11.52513 -11.36408 -11.02423 -10.97219 -10.78129 -10.70045 -10.38420 -10.06898 -9.97223 -9.34108 -9.28391 -9.01273 -8.45471 -8.17741 -7.74867 -6.04384 -4.07622 1.32080 1.56986 3.37156 3.39104 3.42432 3.51889 3.61691 4.20162 4.45004 4.56949 4.78150 4.92846 4.98742 5.23717 5.29205 5.30268 5.35809 5.49833 5.67866 5.76819 5.78523 5.82795 5.88729 6.02678 6.15878 6.21730 6.32817 6.38285 6.56248 6.66763 6.77698 6.87420 7.18046 7.42814 7.67981 7.83595 8.02394 8.25249 8.57294 9.01081 9.19021 9.58083 11.03313 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.005576 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.908246 B = 5020.724409 C = 5987.727007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C -0.192 4.192 4 C -0.046 4.046 5 C -0.221 4.221 6 C 0.155 3.845 7 C -0.102 4.102 8 N -0.474 5.474 9 C 0.383 3.617 10 N -0.670 5.670 11 C 0.504 3.496 12 O -0.473 6.473 13 C 0.032 3.968 14 H 0.054 0.946 15 C -0.134 4.134 16 C -0.502 4.502 17 H 0.075 0.925 18 C 0.059 3.941 19 N -0.897 5.897 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.411 0.589 35 H 0.032 0.968 36 H 0.096 0.904 37 H 0.011 0.989 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 -1.791 -17.326 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.198 4.198 4 C -0.072 4.072 5 C -0.242 4.242 6 C 0.015 3.985 7 C -0.159 4.159 8 N -0.189 5.189 9 C 0.150 3.850 10 N -0.317 5.317 11 C 0.293 3.707 12 O -0.340 6.340 13 C 0.011 3.989 14 H 0.072 0.928 15 C -0.192 4.192 16 C -0.540 4.540 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.536 5.536 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.202 1.202 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.249 0.751 35 H 0.052 0.948 36 H 0.114 0.886 37 H 0.030 0.970 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.082 -0.626 -16.190 16.238 hybrid contribution -0.109 -0.433 -0.099 0.458 sum 0.973 -1.060 -16.289 16.352 Atomic orbital electron populations 1.21797 0.94685 1.01836 1.02460 1.20366 0.96186 0.91949 1.02874 1.20241 1.08614 0.98257 0.92680 1.21127 0.94836 0.94174 0.97029 1.21707 1.07490 0.96319 0.98711 1.21191 0.93101 0.96424 0.87739 1.20687 1.01485 0.90645 1.03101 1.67641 1.13701 1.07756 1.29810 1.18553 0.91543 0.88949 0.85907 1.44475 1.65321 1.17474 1.04435 1.22382 0.76318 0.87080 0.84953 1.90638 1.40082 1.17274 1.86034 1.18915 0.97533 0.94826 0.87604 0.92811 1.21774 0.98595 0.96771 1.02071 1.21085 1.43787 0.99471 0.89691 0.90726 1.24936 0.94939 0.95434 0.98827 1.69854 1.45568 1.17655 1.20528 0.86480 0.78881 0.80954 0.80687 1.20156 1.21360 1.20164 0.92122 0.92348 0.92581 0.90744 0.91152 0.85183 0.85440 0.90599 0.91094 0.90197 0.75120 0.94833 0.88572 0.97038 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.90 37.16 0.37 -1.17 16 2 C -0.08 -0.82 5.51 -27.88 -0.15 -0.97 16 3 C -0.19 -2.70 5.17 -104.28 -0.54 -3.24 16 4 C -0.05 -0.56 9.83 -39.32 -0.39 -0.95 16 5 C -0.22 -2.83 9.73 -39.42 -0.38 -3.21 16 6 C 0.15 2.47 6.78 -82.61 -0.56 1.91 16 7 C -0.10 -1.31 10.17 36.00 0.37 -0.95 16 8 N -0.47 -9.50 7.78 -8.60 -0.07 -9.57 16 9 C 0.38 7.01 7.41 -154.69 -1.15 5.86 16 10 N -0.67 -12.71 5.20 -11.43 -0.06 -12.77 16 11 C 0.50 11.95 7.11 -10.99 -0.08 11.87 16 12 O -0.47 -12.82 13.71 5.56 0.08 -12.74 16 13 C 0.03 0.81 2.64 -92.93 -0.24 0.57 16 14 H 0.05 1.38 8.14 -51.93 -0.42 0.95 16 15 C -0.13 -3.08 8.87 37.16 0.33 -2.75 16 16 C -0.50 -14.31 8.37 -34.44 -0.29 -14.60 16 17 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 19 N -0.90 -25.06 11.32 55.43 0.63 -24.43 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 28 H 0.07 0.76 6.83 -51.93 -0.35 0.41 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.41 6.52 6.21 -40.82 -0.25 6.26 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 37 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 316.64 15.07 4.77 4.77 Total: -1.00 -32.82 316.64 -7.93 -40.75 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.45 Total: 3.12 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.81 Total: -6.06 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.50 Total: -46.78 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.82 -7.93 -40.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598859709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.640 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds