Wall clock time and date at job start Mon Mar 30 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47058 * 2 1 4 4 C 1.38403 * 120.44749 * 265.01578 * 3 2 1 5 5 C 1.38793 * 118.49078 * 179.97438 * 4 3 2 6 6 C 1.38117 * 119.31408 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.57869 * 180.02562 * 6 5 4 8 8 N 1.31906 * 120.84526 * 0.02562 * 6 5 4 9 9 C 1.32384 * 121.63456 * 0.02562 * 8 6 5 10 10 N 1.39410 * 119.69180 * 179.97438 * 9 8 6 11 11 C 1.34781 * 120.00106 * 0.02562 * 10 9 8 12 12 O 1.21276 * 120.00050 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.99762 * 179.97438 * 11 10 9 14 14 H 1.09005 * 109.47482 * 300.00311 * 13 11 10 15 15 C 1.52999 * 109.47456 * 60.00077 * 13 11 10 16 16 C 1.50703 * 109.47243 * 180.02562 * 13 11 10 17 17 H 1.08000 * 119.99567 * 359.97438 * 16 13 11 18 18 C 1.37876 * 120.00090 * 179.97438 * 16 13 11 19 19 N 1.31511 * 120.00096 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99597 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47260 * 60.00520 * 20 18 16 22 22 H 1.48501 * 109.46675 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47015 * 299.99892 * 20 18 16 24 24 H 1.08998 * 109.46733 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47074 * 300.00349 * 1 2 3 26 26 H 1.08999 * 109.46544 * 59.99965 * 1 2 3 27 27 H 1.08998 * 109.47074 * 239.99651 * 2 1 3 28 28 H 1.09004 * 109.46967 * 120.00165 * 2 1 3 29 29 H 1.07999 * 120.75355 * 0.02562 * 4 3 2 30 30 H 1.08000 * 120.34182 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.46870 * 269.99918 * 7 6 5 32 32 H 1.09005 * 109.46755 * 30.00305 * 7 6 5 33 33 H 1.08999 * 109.46917 * 149.99621 * 7 6 5 34 34 H 0.97005 * 119.99835 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.47014 * 59.99637 * 15 13 11 36 36 H 1.09000 * 109.47330 * 179.97438 * 15 13 11 37 37 H 1.09003 * 109.47199 * 300.00211 * 15 13 11 38 38 H 0.97001 * 119.99821 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3639 2.0475 -1.1887 5 6 2.8219 3.3569 -1.1415 6 6 2.9319 3.9912 0.0805 7 6 3.4280 5.4130 0.1386 8 7 2.6085 3.3683 1.1973 9 6 2.1689 2.1196 1.1937 10 7 1.8390 1.5001 2.3983 11 6 1.9677 2.1726 3.5593 12 8 2.3700 3.3167 3.5560 13 6 1.6105 1.5031 4.8612 14 1 0.5612 1.2084 4.8424 15 6 2.4851 0.2626 5.0537 16 6 1.8418 2.4630 5.9997 17 1 2.2110 3.4582 5.8004 18 6 1.5821 2.0708 7.2958 19 7 1.1331 0.8588 7.5385 20 14 1.8696 3.2605 8.7069 21 1 1.0211 4.4647 8.5198 22 1 1.5175 2.6008 9.9899 23 1 3.2993 3.6613 8.7330 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 2.2676 1.5297 -2.1315 30 1 3.0894 3.8744 -2.0509 31 1 4.5130 5.4152 0.2423 32 1 3.1495 5.9326 -0.7783 33 1 2.9801 5.9194 0.9936 34 1 1.5162 0.5854 2.4008 35 1 3.5344 0.5573 5.0725 36 1 2.2271 -0.2213 5.9957 37 1 2.3175 -0.4316 4.2302 38 1 0.9507 0.5827 8.4504 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598859709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:07 Heat of formation + Delta-G solvation = -28.236105 kcal Electronic energy + Delta-G solvation = -19759.927185 eV Core-core repulsion = 16794.340715 eV Total energy + Delta-G solvation = -2965.586470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.88307 -40.06655 -36.60243 -35.83458 -35.12917 -32.90805 -32.00829 -31.65347 -28.06593 -27.24015 -25.52402 -24.15174 -23.62652 -22.10937 -21.06449 -18.86739 -18.20245 -17.82734 -16.82570 -16.51164 -16.30180 -16.19215 -15.30679 -15.15434 -14.92265 -14.59915 -14.46502 -14.05744 -13.77398 -13.57040 -13.28360 -13.03348 -12.98628 -12.90126 -12.72002 -12.62014 -12.27306 -12.20927 -12.03079 -11.82869 -11.50717 -11.10907 -10.86437 -10.52117 -10.46733 -9.78348 -9.00282 -8.17949 -6.28443 0.16563 0.47391 1.39524 1.41280 1.49834 1.92530 2.07041 2.43795 2.94626 3.11911 3.42807 3.83744 3.92027 4.04483 4.20593 4.31277 4.47196 4.48647 4.59238 4.68346 4.74026 4.78100 4.87305 4.89050 4.93487 5.01523 5.08177 5.18517 5.22402 5.36812 5.38032 5.43735 5.49129 5.70073 5.85480 5.99182 6.14150 6.42689 6.78140 7.22263 7.37410 7.55628 8.87919 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.005576 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.908246 B = 5020.724409 C = 5987.727007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.179 4.179 4 C -0.043 4.043 5 C -0.199 4.199 6 C 0.120 3.880 7 C -0.098 4.098 8 N -0.530 5.530 9 C 0.338 3.662 10 N -0.658 5.658 11 C 0.508 3.492 12 O -0.520 6.520 13 C 0.029 3.971 14 H 0.045 0.955 15 C -0.120 4.120 16 C -0.532 4.532 17 H 0.046 0.954 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.956 3.044 21 H -0.278 1.278 22 H -0.271 1.271 23 H -0.277 1.277 24 H 0.080 0.920 25 H 0.033 0.967 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.177 0.823 30 H 0.169 0.831 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.049 0.951 34 H 0.424 0.576 35 H 0.021 0.979 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 -2.988 -20.137 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.185 4.185 4 C -0.069 4.069 5 C -0.220 4.220 6 C -0.018 4.018 7 C -0.156 4.156 8 N -0.246 5.246 9 C 0.107 3.893 10 N -0.307 5.307 11 C 0.297 3.703 12 O -0.392 6.392 13 C 0.008 3.992 14 H 0.062 0.938 15 C -0.178 4.178 16 C -0.570 4.570 17 H 0.065 0.935 18 C -0.177 4.177 19 N -0.547 5.547 20 Si 0.782 3.218 21 H -0.203 1.203 22 H -0.196 1.196 23 H -0.203 1.203 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.195 0.805 30 H 0.186 0.814 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.264 0.736 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.120 -1.862 -19.051 19.175 hybrid contribution -0.130 -0.062 0.605 0.622 sum 0.990 -1.924 -18.447 18.573 Atomic orbital electron populations 1.21783 0.94194 1.02925 1.01629 1.20494 0.96467 0.90045 1.04356 1.20614 1.06787 0.99448 0.91608 1.21709 0.93151 0.94009 0.98008 1.22166 1.04557 0.96551 0.98722 1.21716 0.94308 0.97616 0.88177 1.20743 1.01566 0.89580 1.03664 1.67445 1.15092 1.09307 1.32724 1.18833 0.94415 0.89537 0.86465 1.43957 1.65079 1.17715 1.03912 1.21991 0.75914 0.86491 0.85955 1.90608 1.42615 1.19029 1.86939 1.18833 0.97291 0.95120 0.87963 0.93763 1.21578 0.97215 0.96379 1.02638 1.21206 1.44933 0.99225 0.91659 0.93540 1.25564 0.94521 0.97007 1.00588 1.69924 1.45247 1.18355 1.21209 0.85642 0.78494 0.79127 0.78543 1.20316 1.19577 1.20289 0.90089 0.94804 0.91815 0.87500 0.91418 0.80531 0.81392 0.90024 0.87402 0.93159 0.73624 0.95996 0.90532 0.92920 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.90 71.98 0.71 -1.90 16 2 C -0.08 -1.39 5.51 29.85 0.16 -1.23 16 3 C -0.18 -4.60 5.17 -19.64 -0.10 -4.71 16 4 C -0.04 -0.87 9.83 22.44 0.22 -0.65 16 5 C -0.20 -4.40 9.73 22.37 0.22 -4.18 16 6 C 0.12 3.76 6.78 42.52 0.29 4.04 16 7 C -0.10 -2.51 10.17 71.24 0.72 -1.79 16 8 N -0.53 -21.87 7.78 -181.11 -1.41 -23.28 16 9 C 0.34 12.42 7.41 132.89 0.98 13.41 16 10 N -0.66 -25.57 5.20 -308.46 -1.60 -27.17 16 11 C 0.51 25.27 7.11 87.65 0.62 25.89 16 12 O -0.52 -30.07 13.71 -3.02 -0.04 -30.11 16 13 C 0.03 1.52 2.64 -12.29 -0.03 1.49 16 14 H 0.04 2.36 8.14 -2.38 -0.02 2.34 16 15 C -0.12 -5.59 8.87 71.98 0.64 -4.95 16 16 C -0.53 -31.70 8.37 25.60 0.21 -31.49 16 17 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 18 C 0.02 1.29 5.30 84.66 0.45 1.74 16 19 N -0.91 -51.30 11.32 21.45 0.24 -51.05 16 20 Si 0.96 45.83 29.54 68.60 2.03 47.85 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.11 1.32 8.06 -2.39 -0.02 1.30 16 28 H 0.07 1.30 6.83 -2.38 -0.02 1.28 16 29 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.11 1.85 8.08 -2.38 -0.02 1.83 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.42 13.44 6.21 -92.70 -0.58 12.86 16 35 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 3.88 6.07 -2.39 -0.01 3.86 16 37 H 0.05 1.95 7.57 -2.39 -0.02 1.93 16 38 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -76.20 316.64 4.80 -71.40 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.48 Total: 16.68 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 5.10 Total: -4.32 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -2.77 Total: -101.50 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.04 Total: -30.11 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -76.20 4.80 -71.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598859709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.160 kcal (2) G-P(sol) polarization free energy of solvation -76.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds