Wall clock time and date at job start Mon Mar 30 2020 07:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00089 * 2 1 4 4 H 1.48501 * 109.46871 * 269.99689 * 3 2 1 5 5 H 1.48491 * 109.47217 * 29.99579 * 3 2 1 6 6 H 1.48500 * 109.47172 * 150.00046 * 3 2 1 7 7 C 1.37880 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99774 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00461 * 359.97438 * 7 2 1 10 10 H 1.09010 * 110.65724 * 61.48378 * 9 7 2 11 11 C 1.54999 * 110.61254 * 184.42248 * 9 7 2 12 12 C 1.54862 * 102.09576 * 155.38570 * 11 9 7 13 13 C 1.53879 * 104.07979 * 339.10815 * 12 11 9 14 14 O 1.43439 * 107.58376 * 358.12754 * 13 12 11 15 15 C 1.52825 * 109.68439 * 238.51057 * 13 12 11 16 16 C 1.53056 * 109.39900 * 179.53964 * 15 13 12 17 17 C 1.52999 * 109.47966 * 59.90687 * 16 15 13 18 18 C 1.53007 * 109.46921 * 60.08706 * 17 16 15 19 19 C 1.53010 * 109.40840 * 299.91602 * 18 17 16 20 20 C 1.53013 * 109.44432 * 60.08573 * 19 18 17 21 21 C 1.53777 * 109.35748 * 300.12945 * 19 18 17 22 22 C 1.52825 * 109.68789 * 117.73777 * 13 12 11 23 23 C 1.52985 * 109.58717 * 300.01443 * 17 16 15 24 24 H 0.97007 * 120.00214 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.90987 * 273.58835 * 11 9 7 26 26 H 1.09002 * 110.90905 * 37.19178 * 11 9 7 27 27 H 1.09003 * 110.51052 * 220.45769 * 12 11 9 28 28 H 1.09001 * 110.50975 * 97.75532 * 12 11 9 29 29 H 1.08999 * 109.51866 * 59.48778 * 15 13 12 30 30 H 1.08999 * 109.46778 * 299.90902 * 16 15 13 31 31 H 1.08994 * 109.47085 * 179.90995 * 16 15 13 32 32 H 1.08997 * 109.44979 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.48543 * 59.90437 * 18 17 16 34 34 H 1.08999 * 109.48347 * 179.97438 * 18 17 16 35 35 H 1.09007 * 109.44680 * 179.97438 * 19 18 17 36 36 H 1.08995 * 109.46474 * 179.88612 * 20 19 18 37 37 H 1.09005 * 109.46196 * 59.89097 * 20 19 18 38 38 H 1.08993 * 109.51048 * 300.06958 * 21 19 18 39 39 H 1.09005 * 109.36816 * 180.11004 * 21 19 18 40 40 H 1.09002 * 109.51538 * 300.69244 * 22 13 12 41 41 H 1.08992 * 109.47208 * 179.97438 * 23 17 16 42 42 H 1.08997 * 109.46608 * 299.98588 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6366 -2.5894 -0.8943 11 6 2.2309 -3.6949 0.1140 12 6 1.3315 -4.7948 0.7299 13 6 0.1779 -4.0131 1.3827 14 8 0.4376 -2.6157 1.1896 15 6 0.1200 -4.3322 2.8761 16 6 -1.0218 -3.5428 3.5208 17 6 -2.3467 -3.9317 2.8617 18 6 -2.5920 -5.4295 3.0548 19 6 -1.4512 -6.2190 2.4094 20 6 -0.1262 -5.8307 3.0688 21 6 -1.3921 -5.8938 0.9076 22 6 -1.1440 -4.3953 0.7179 23 6 -2.2886 -3.6130 1.3665 24 1 -0.4851 0.8401 -0.0004 25 1 2.5935 -3.9944 -0.8694 26 1 3.0621 -3.4557 0.7773 27 1 1.8816 -5.3618 1.4810 28 1 0.9517 -5.4575 -0.0477 29 1 1.0644 -4.0551 3.3446 30 1 -0.8478 -2.4754 3.3845 31 1 -1.0652 -3.7707 4.5857 32 1 -3.1594 -3.3689 3.3208 33 1 -2.6342 -5.6566 4.1201 34 1 -3.5360 -5.7068 2.5858 35 1 -1.6252 -7.2863 2.5471 36 1 0.6864 -6.3944 2.6107 37 1 -0.1705 -6.0575 4.1341 38 1 -2.3369 -6.1679 0.4384 39 1 -0.5807 -6.4576 0.4473 40 1 -1.0960 -4.1659 -0.3466 41 1 -3.2330 -3.8912 0.8988 42 1 -2.1153 -2.5457 1.2290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686240090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:49 Heat of formation + Delta-G solvation = -76.111438 kcal Electronic energy + Delta-G solvation = -21983.032793 eV Core-core repulsion = 19118.910636 eV Total energy + Delta-G solvation = -2864.122157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20469 -37.24175 -32.74497 -32.43365 -32.17882 -30.96972 -30.40460 -27.11547 -25.40235 -24.39707 -22.50167 -21.32451 -20.97699 -20.03498 -19.51147 -16.81995 -16.48394 -15.08916 -14.82708 -14.59210 -14.38066 -14.05935 -13.65406 -13.40165 -13.07323 -12.65823 -12.53478 -12.11128 -12.05387 -11.93916 -11.73542 -11.57575 -11.08995 -10.87290 -10.81298 -10.51724 -10.46205 -10.32110 -10.27786 -10.13950 -9.97554 -9.82778 -9.30555 -9.13338 -9.03884 -8.90672 -8.52321 -7.82980 -5.97017 -4.08624 3.32479 3.39401 3.42761 4.45314 4.81034 4.91821 4.94565 5.21793 5.48255 5.53003 5.54037 5.56243 5.62567 5.67706 5.69795 5.75985 5.81615 5.84701 5.96866 6.01858 6.06662 6.23246 6.26929 6.31344 6.33722 6.37347 6.41889 6.48078 6.50214 6.51796 6.55613 6.73403 6.79919 6.84484 6.92900 6.96972 7.08542 7.13610 7.22011 7.60388 7.93195 8.31206 8.68904 9.05574 9.61145 11.10414 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.030182 B = 0.007200 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.471555 B = 3888.225332 C = 4227.376092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.078 3.922 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.211 3.789 10 H 0.022 0.978 11 C -0.149 4.149 12 C -0.148 4.148 13 C 0.113 3.887 14 O -0.336 6.336 15 C -0.073 4.073 16 C -0.101 4.101 17 C -0.082 4.082 18 C -0.106 4.106 19 C -0.083 4.083 20 C -0.107 4.107 21 C -0.108 4.108 22 C -0.090 4.090 23 C -0.101 4.101 24 H 0.259 0.741 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.769 -11.572 4.679 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.156 3.844 10 H 0.040 0.960 11 C -0.187 4.187 12 C -0.185 4.185 13 C 0.072 3.928 14 O -0.255 6.255 15 C -0.092 4.092 16 C -0.139 4.139 17 C -0.101 4.101 18 C -0.143 4.143 19 C -0.102 4.102 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.109 4.109 23 C -0.139 4.139 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.011 -11.285 4.814 12.908 hybrid contribution 0.501 0.687 -0.158 0.865 sum -3.511 -10.598 4.656 12.096 Atomic orbital electron populations 1.70034 1.05886 1.26347 1.47425 1.25041 0.94771 0.99078 0.93832 0.86662 0.80050 0.83600 0.78031 1.20636 1.21151 1.19833 1.20994 0.92619 0.89928 1.53223 0.92008 1.20597 0.86428 0.92139 0.85230 0.96032 1.23228 0.99428 0.96781 0.99282 1.23043 0.97452 0.98448 0.99578 1.21512 0.92119 0.86354 0.92840 1.89220 1.71862 1.17408 1.46977 1.21065 0.98597 0.93823 0.95667 1.21431 0.93813 1.01292 0.97345 1.20997 0.97420 0.94916 0.96749 1.21542 0.97524 0.95716 0.99526 1.21156 0.95312 0.98239 0.95482 1.21596 0.96914 0.96300 0.99625 1.21745 1.00725 0.96776 0.95330 1.21398 0.96175 0.93561 0.99783 1.21406 0.96580 1.02062 0.93814 0.93082 0.92669 0.91983 0.92141 0.92084 0.91391 0.90620 0.93379 0.92131 0.92720 0.92657 0.92124 0.92125 0.92494 0.92652 0.92272 0.91471 0.93490 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.32 12.94 55.43 0.72 -24.60 16 2 C 0.08 2.23 5.42 -17.82 -0.10 2.13 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.97 8.83 -34.44 -0.30 -15.27 16 8 H 0.06 1.71 7.78 -52.48 -0.41 1.30 16 9 C 0.21 5.46 3.12 -26.83 -0.08 5.38 16 10 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 11 C -0.15 -3.18 6.56 -24.69 -0.16 -3.34 16 12 C -0.15 -2.71 5.13 -25.29 -0.13 -2.84 16 13 C 0.11 2.22 0.43 -90.34 -0.04 2.18 16 14 O -0.34 -8.47 8.94 -35.23 -0.32 -8.78 16 15 C -0.07 -1.27 2.32 -90.64 -0.21 -1.48 16 16 C -0.10 -1.75 5.06 -26.70 -0.14 -1.88 16 17 C -0.08 -1.31 3.18 -90.62 -0.29 -1.60 16 18 C -0.11 -1.41 5.20 -26.72 -0.14 -1.55 16 19 C -0.08 -1.12 3.22 -90.20 -0.29 -1.41 16 20 C -0.11 -1.51 4.96 -26.69 -0.13 -1.64 16 21 C -0.11 -1.59 4.97 -26.29 -0.13 -1.72 16 22 C -0.09 -1.64 2.30 -90.64 -0.21 -1.85 16 23 C -0.10 -1.83 5.05 -26.71 -0.13 -1.96 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.06 1.33 8.05 -51.93 -0.42 0.92 16 27 H 0.06 1.01 6.51 -51.93 -0.34 0.67 16 28 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.54 7.74 -51.93 -0.40 1.14 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.83 6.56 -51.93 -0.34 0.49 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.83 6.48 -51.93 -0.34 0.50 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.79 7.76 -51.93 -0.40 1.39 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -29.15 301.71 -9.74 -38.89 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.18 Total: 0.32 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -2.48 Total: -26.86 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.72 Total: -24.60 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.32 Total: -8.78 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.15 -9.74 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686240090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.219 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds