Wall clock time and date at job start Mon Mar 30 2020 07:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00089 * 2 1 4 4 H 1.48501 * 109.46871 * 269.99689 * 3 2 1 5 5 H 1.48491 * 109.47217 * 29.99579 * 3 2 1 6 6 H 1.48500 * 109.47172 * 150.00046 * 3 2 1 7 7 C 1.37880 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99774 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00461 * 359.97438 * 7 2 1 10 10 H 1.09010 * 110.65724 * 61.48378 * 9 7 2 11 11 C 1.54999 * 110.61254 * 184.42248 * 9 7 2 12 12 C 1.54862 * 102.09576 * 155.38570 * 11 9 7 13 13 C 1.53879 * 104.07979 * 339.10815 * 12 11 9 14 14 O 1.43439 * 107.58376 * 358.12754 * 13 12 11 15 15 C 1.52825 * 109.68439 * 238.51057 * 13 12 11 16 16 C 1.53056 * 109.39900 * 179.53964 * 15 13 12 17 17 C 1.52999 * 109.47966 * 59.90687 * 16 15 13 18 18 C 1.53007 * 109.46921 * 60.08706 * 17 16 15 19 19 C 1.53010 * 109.40840 * 299.91602 * 18 17 16 20 20 C 1.53013 * 109.44432 * 60.08573 * 19 18 17 21 21 C 1.53777 * 109.35748 * 300.12945 * 19 18 17 22 22 C 1.52825 * 109.68789 * 117.73777 * 13 12 11 23 23 C 1.52985 * 109.58717 * 300.01443 * 17 16 15 24 24 H 0.97007 * 120.00214 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.90987 * 273.58835 * 11 9 7 26 26 H 1.09002 * 110.90905 * 37.19178 * 11 9 7 27 27 H 1.09003 * 110.51052 * 220.45769 * 12 11 9 28 28 H 1.09001 * 110.50975 * 97.75532 * 12 11 9 29 29 H 1.08999 * 109.51866 * 59.48778 * 15 13 12 30 30 H 1.08999 * 109.46778 * 299.90902 * 16 15 13 31 31 H 1.08994 * 109.47085 * 179.90995 * 16 15 13 32 32 H 1.08997 * 109.44979 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.48543 * 59.90437 * 18 17 16 34 34 H 1.08999 * 109.48347 * 179.97438 * 18 17 16 35 35 H 1.09007 * 109.44680 * 179.97438 * 19 18 17 36 36 H 1.08995 * 109.46474 * 179.88612 * 20 19 18 37 37 H 1.09005 * 109.46196 * 59.89097 * 20 19 18 38 38 H 1.08993 * 109.51048 * 300.06958 * 21 19 18 39 39 H 1.09005 * 109.36816 * 180.11004 * 21 19 18 40 40 H 1.09002 * 109.51538 * 300.69244 * 22 13 12 41 41 H 1.08992 * 109.47208 * 179.97438 * 23 17 16 42 42 H 1.08997 * 109.46608 * 299.98588 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6366 -2.5894 -0.8943 11 6 2.2309 -3.6949 0.1140 12 6 1.3315 -4.7948 0.7299 13 6 0.1779 -4.0131 1.3827 14 8 0.4376 -2.6157 1.1896 15 6 0.1200 -4.3322 2.8761 16 6 -1.0218 -3.5428 3.5208 17 6 -2.3467 -3.9317 2.8617 18 6 -2.5920 -5.4295 3.0548 19 6 -1.4512 -6.2190 2.4094 20 6 -0.1262 -5.8307 3.0688 21 6 -1.3921 -5.8938 0.9076 22 6 -1.1440 -4.3953 0.7179 23 6 -2.2886 -3.6130 1.3665 24 1 -0.4851 0.8401 -0.0004 25 1 2.5935 -3.9944 -0.8694 26 1 3.0621 -3.4557 0.7773 27 1 1.8816 -5.3618 1.4810 28 1 0.9517 -5.4575 -0.0477 29 1 1.0644 -4.0551 3.3446 30 1 -0.8478 -2.4754 3.3845 31 1 -1.0652 -3.7707 4.5857 32 1 -3.1594 -3.3689 3.3208 33 1 -2.6342 -5.6566 4.1201 34 1 -3.5360 -5.7068 2.5858 35 1 -1.6252 -7.2863 2.5471 36 1 0.6864 -6.3944 2.6107 37 1 -0.1705 -6.0575 4.1341 38 1 -2.3369 -6.1679 0.4384 39 1 -0.5807 -6.4576 0.4473 40 1 -1.0960 -4.1659 -0.3466 41 1 -3.2330 -3.8912 0.8988 42 1 -2.1153 -2.5457 1.2290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686240090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:48 Heat of formation + Delta-G solvation = -91.917512 kcal Electronic energy + Delta-G solvation = -21983.718196 eV Core-core repulsion = 19118.910636 eV Total energy + Delta-G solvation = -2864.807560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.167 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.57375 -38.91410 -34.76857 -33.83272 -33.52551 -32.45410 -32.09727 -28.92080 -26.68573 -26.11041 -24.05469 -22.80562 -22.31691 -21.55320 -21.04174 -18.61996 -18.18724 -16.83643 -16.52023 -16.13963 -15.93016 -15.48717 -15.02857 -14.77837 -14.52559 -14.28366 -13.95519 -13.74060 -13.50216 -13.45504 -13.24574 -12.97225 -12.85272 -12.47762 -12.39924 -12.27372 -12.02467 -11.85564 -11.69438 -11.63012 -11.42178 -11.30886 -11.02065 -10.75034 -10.62002 -10.44873 -10.33649 -9.65659 -8.14854 -6.34978 1.37169 1.39051 1.49575 2.39076 3.06575 3.51233 3.65872 3.71009 4.03305 4.06711 4.14927 4.19269 4.28671 4.39789 4.41904 4.45958 4.48493 4.56463 4.59884 4.65076 4.78976 4.88662 4.92129 4.95469 4.97482 5.03322 5.08787 5.11414 5.16103 5.21909 5.22994 5.24394 5.29698 5.40221 5.47345 5.52914 5.66430 5.70569 5.73151 5.76809 5.80525 6.20010 6.62838 7.07982 7.39916 8.92623 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.030182 B = 0.007200 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.471555 B = 3888.225332 C = 4227.376092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.555 4.555 8 H 0.062 0.938 9 C 0.206 3.794 10 H -0.017 1.017 11 C -0.144 4.144 12 C -0.137 4.137 13 C 0.098 3.902 14 O -0.370 6.370 15 C -0.074 4.074 16 C -0.101 4.101 17 C -0.080 4.080 18 C -0.099 4.099 19 C -0.081 4.081 20 C -0.100 4.100 21 C -0.102 4.102 22 C -0.091 4.091 23 C -0.099 4.099 24 H 0.259 0.741 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.061 0.939 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 -14.454 6.085 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.593 4.593 8 H 0.080 0.920 9 C 0.150 3.850 10 H 0.001 0.999 11 C -0.181 4.181 12 C -0.174 4.174 13 C 0.057 3.943 14 O -0.290 6.290 15 C -0.093 4.093 16 C -0.138 4.138 17 C -0.099 4.099 18 C -0.136 4.136 19 C -0.099 4.099 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.110 4.110 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.985 -14.182 6.217 15.989 hybrid contribution 0.468 1.635 -0.625 1.812 sum -3.517 -12.547 5.591 14.180 Atomic orbital electron populations 1.70197 1.07551 1.27117 1.48531 1.25928 0.95636 1.02911 0.93374 0.85557 0.78707 0.78808 0.78530 1.19413 1.20914 1.19033 1.21424 0.92946 0.91601 1.53280 0.91975 1.20403 0.86905 0.93374 0.84326 0.99932 1.23108 0.98707 0.96030 1.00294 1.23024 0.96344 0.97617 1.00409 1.21908 0.93382 0.83851 0.95121 1.89142 1.72127 1.21570 1.46153 1.21101 0.97843 0.96931 0.93407 1.21399 0.94910 0.98346 0.99170 1.20995 0.96689 0.97880 0.94323 1.21528 0.98319 0.92529 1.01273 1.21222 0.94666 1.00270 0.93719 1.21596 0.97894 0.92794 1.01490 1.21726 1.01952 0.93082 0.97220 1.21361 0.95397 0.96830 0.97430 1.21342 0.97394 0.98560 0.96386 0.93192 0.91346 0.92404 0.89552 0.90340 0.92952 0.95626 0.90754 0.91718 0.90396 0.91099 0.88422 0.90960 0.90088 0.91137 0.91203 0.94899 0.91992 0.95784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.99 12.94 21.45 0.28 -55.71 16 2 C 0.02 1.40 5.42 84.66 0.46 1.86 16 3 Si 0.96 45.65 29.54 68.60 2.03 47.68 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.56 -32.84 8.83 25.60 0.23 -32.62 16 8 H 0.06 3.55 7.78 -2.91 -0.02 3.52 16 9 C 0.21 11.26 3.12 30.53 0.10 11.36 16 10 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 11 C -0.14 -6.21 6.56 31.91 0.21 -6.00 16 12 C -0.14 -4.86 5.13 31.53 0.16 -4.70 16 13 C 0.10 3.90 0.43 -10.61 0.00 3.90 16 14 O -0.37 -19.91 8.94 -148.98 -1.33 -21.24 16 15 C -0.07 -2.51 2.32 -10.81 -0.03 -2.53 16 16 C -0.10 -3.47 5.06 30.61 0.16 -3.31 16 17 C -0.08 -2.48 3.18 -10.80 -0.03 -2.51 16 18 C -0.10 -2.21 5.20 30.60 0.16 -2.05 16 19 C -0.08 -1.75 3.22 -10.52 -0.03 -1.79 16 20 C -0.10 -2.39 4.96 30.62 0.15 -2.24 16 21 C -0.10 -2.67 4.97 30.88 0.15 -2.52 16 22 C -0.09 -3.36 2.30 -10.81 -0.02 -3.39 16 23 C -0.10 -3.72 5.05 30.61 0.15 -3.56 16 24 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.06 2.51 8.05 -2.39 -0.02 2.49 16 27 H 0.09 2.63 6.51 -2.39 -0.02 2.61 16 28 H 0.08 2.51 6.34 -2.39 -0.02 2.49 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.02 1.10 7.74 -2.39 -0.02 1.08 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.07 1.59 6.56 -2.39 -0.02 1.58 16 37 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.69 6.48 -2.38 -0.02 1.68 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.02 1.14 7.76 -2.39 -0.02 1.12 16 Total: -1.00 -69.03 301.71 3.75 -65.28 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.98 Total: 14.11 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 1.80 Total: -50.11 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.28 Total: -55.71 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.33 Total: -21.24 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.03 3.75 -65.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686240090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.637 kcal (2) G-P(sol) polarization free energy of solvation -69.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds