Wall clock time and date at job start Mon Mar 30 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47249 * 2 1 4 4 C 1.53004 * 109.46750 * 119.99337 * 2 1 3 5 5 C 1.50699 * 109.46927 * 184.99917 * 4 2 1 6 6 H 1.07998 * 119.99874 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99736 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00127 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99504 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47513 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46931 * 120.00053 * 9 7 5 12 12 H 1.48499 * 109.46932 * 239.99574 * 9 7 5 13 13 O 1.42898 * 109.46946 * 239.99004 * 2 1 3 14 14 C 1.35907 * 116.99570 * 84.82663 * 13 2 1 15 15 C 1.38748 * 120.09187 * 354.60277 * 14 13 2 16 16 C 1.38000 * 119.87811 * 180.02562 * 15 14 13 17 17 C 1.38546 * 120.28959 * 359.97438 * 16 15 14 18 18 C 1.38264 * 119.93891 * 359.97438 * 17 16 15 19 19 C 1.38410 * 119.90209 * 0.02562 * 18 17 16 20 20 C 1.51374 * 109.75580 * 180.02562 * 18 17 16 21 21 H 1.09007 * 110.38375 * 101.77064 * 20 18 17 22 22 O 1.42898 * 110.30145 * 223.87770 * 20 18 17 23 23 C 1.54339 * 105.17348 * 342.80095 * 20 18 17 24 24 C 1.51391 * 130.32509 * 180.02562 * 17 16 15 25 25 H 1.08996 * 109.47227 * 300.00714 * 1 2 3 26 26 H 1.09002 * 109.46807 * 60.00306 * 1 2 3 27 27 H 1.09000 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47081 * 305.00223 * 4 2 1 29 29 H 1.09000 * 109.47045 * 64.99892 * 4 2 1 30 30 H 0.96998 * 119.99940 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.06316 * 0.04453 * 15 14 13 32 32 H 1.07998 * 119.85606 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.91180 * 180.02562 * 19 18 17 34 34 H 0.96706 * 114.00214 * 295.74226 * 22 20 18 35 35 H 1.09001 * 110.81810 * 144.59486 * 23 20 18 36 36 H 1.08999 * 110.82265 * 268.14174 * 23 20 18 37 37 H 1.09007 * 110.29914 * 78.26879 * 24 17 16 38 38 H 1.09000 * 110.30324 * 316.12214 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.6148 1.3129 6 1 4.0789 -0.0855 0.5397 7 6 4.2303 -1.1934 2.3581 8 7 3.5763 -1.8375 3.2998 9 14 6.0921 -1.0622 2.4363 10 1 6.5838 -0.2918 1.2659 11 1 6.4871 -0.3665 3.6875 12 1 6.6854 -2.4234 2.4184 13 8 2.0064 -0.6738 -1.1666 14 6 2.1090 0.0614 -2.3050 15 6 1.6545 1.3721 -2.3300 16 6 1.7604 2.1145 -3.4885 17 6 2.3193 1.5570 -4.6271 18 6 2.7740 0.2515 -4.6043 19 6 2.6690 -0.4956 -3.4439 20 6 3.3362 -0.1183 -5.9603 21 1 4.4255 -0.0823 -5.9423 22 8 2.8901 -1.4206 -6.3436 23 6 2.7811 0.9452 -6.9314 24 6 2.5456 2.1533 -6.0001 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -0.2615 2.1370 29 1 1.7516 -1.7714 1.2058 30 1 4.0607 -2.2448 4.0349 31 1 1.2188 1.8106 -1.4444 32 1 1.4061 3.1345 -3.5077 33 1 3.0245 -1.5153 -3.4258 34 1 3.2082 -2.1303 -5.7689 35 1 3.5139 1.1868 -7.7013 36 1 1.8444 0.6113 -7.3775 37 1 3.4227 2.8005 -5.9914 38 1 1.6658 2.7117 -6.3196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690718339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:56 Heat of formation + Delta-G solvation = -77.223243 kcal Electronic energy + Delta-G solvation = -19445.337136 eV Core-core repulsion = 16445.333673 eV Total energy + Delta-G solvation = -3000.003463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36617 -38.67665 -36.27705 -34.28516 -33.22640 -31.71903 -30.54629 -28.25166 -27.43257 -26.37549 -23.38065 -22.73362 -21.48533 -20.75213 -19.56974 -17.74044 -17.24169 -16.40773 -15.84938 -15.41521 -15.17929 -14.54225 -14.37384 -14.30326 -13.52121 -13.09530 -13.03094 -12.88105 -12.32134 -12.15877 -11.99083 -11.73244 -11.66918 -11.54415 -11.40915 -11.22040 -10.82370 -10.78770 -10.68612 -10.39838 -10.03814 -9.93007 -9.39563 -9.11576 -8.65747 -8.41414 -7.62809 -6.04093 -4.05479 1.48383 1.68942 3.29738 3.37326 3.42432 3.78073 3.90652 4.18110 4.44066 4.49982 4.60520 4.94314 5.08972 5.13931 5.29492 5.33745 5.43133 5.49733 5.54835 5.62888 5.70986 5.72575 5.82998 5.87645 5.95848 6.01801 6.18660 6.29161 6.48590 6.53950 6.64147 6.74578 6.78627 6.98906 7.47438 7.53128 7.56921 7.92592 8.13263 8.34124 8.98408 9.58043 11.07386 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.004912 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.045381 B = 5699.243384 C = 6250.315517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 H 0.062 0.938 4 C 0.025 3.975 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 O -0.290 6.290 14 C 0.154 3.846 15 C -0.209 4.209 16 C -0.068 4.068 17 C -0.148 4.148 18 C -0.099 4.099 19 C -0.142 4.142 20 C 0.146 3.854 21 H 0.072 0.928 22 O -0.562 6.562 23 C -0.110 4.110 24 C -0.072 4.072 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.381 0.619 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 6.703 -16.670 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.080 0.920 4 C -0.012 4.012 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 O -0.202 6.202 14 C 0.106 3.894 15 C -0.227 4.227 16 C -0.086 4.086 17 C -0.149 4.149 18 C -0.099 4.099 19 C -0.161 4.161 20 C 0.088 3.912 21 H 0.089 0.911 22 O -0.368 6.368 23 C -0.148 4.148 24 C -0.109 4.109 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.228 0.772 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.323 6.738 -16.927 18.519 hybrid contribution 1.221 -0.088 0.887 1.511 sum -2.102 6.650 -16.040 17.491 Atomic orbital electron populations 1.22419 0.96989 1.02657 1.01463 1.22883 0.91834 0.97112 0.85059 0.91961 1.19277 0.96621 0.96526 0.88751 1.21156 0.91680 1.34427 1.07928 0.92586 1.24977 0.98476 0.95229 0.95645 1.69957 1.35484 1.35999 1.12131 0.86528 0.85741 0.77850 0.77887 1.19759 1.21001 1.20928 1.86274 1.79820 1.38059 1.16090 1.18990 0.92684 0.90185 0.87526 1.21301 1.07136 0.94738 0.99552 1.20328 0.97815 0.99062 0.91362 1.20210 1.03537 0.95373 0.95731 1.20864 0.99026 0.95061 0.94963 1.19697 1.04927 1.00909 0.90551 1.21324 0.96977 0.83518 0.89406 0.91070 1.86494 1.77120 1.16099 1.57049 1.22315 1.02306 0.93195 0.96960 1.20901 1.01965 0.97138 0.90923 0.91354 0.93276 0.91887 0.94330 0.95260 0.92974 0.84921 0.86375 0.85710 0.77156 0.90177 0.89885 0.90478 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 9.17 37.16 0.34 -2.69 16 2 C 0.09 1.80 2.17 -26.73 -0.06 1.74 16 3 H 0.06 1.26 6.32 -51.93 -0.33 0.93 16 4 C 0.03 0.64 4.68 -27.88 -0.13 0.51 16 5 C -0.51 -14.51 8.88 -34.44 -0.31 -14.82 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 O -0.29 -6.23 9.55 -19.45 -0.19 -6.41 16 14 C 0.15 2.85 6.59 -39.26 -0.26 2.59 16 15 C -0.21 -3.41 8.24 -39.48 -0.33 -3.74 16 16 C -0.07 -0.96 10.03 -39.55 -0.40 -1.35 16 17 C -0.15 -2.03 6.14 -104.16 -0.64 -2.67 16 18 C -0.10 -1.43 5.82 -104.22 -0.61 -2.04 16 19 C -0.14 -2.37 9.94 -39.39 -0.39 -2.76 16 20 C 0.15 1.73 4.22 -26.85 -0.11 1.62 16 21 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 22 O -0.56 -6.80 13.34 -35.23 -0.47 -7.27 16 23 C -0.11 -1.10 6.80 -25.32 -0.17 -1.27 16 24 C -0.07 -0.73 6.77 -26.84 -0.18 -0.92 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.75 6.90 -51.93 -0.36 0.39 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.13 2.06 5.44 -52.49 -0.29 1.77 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.38 3.44 9.09 45.56 0.41 3.86 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -31.81 315.13 -8.28 -40.09 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.75 Total: 2.22 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -3.34 Total: -24.25 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.66 Total: -13.68 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.81 -8.28 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690718339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.134 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds