Wall clock time and date at job start Mon Mar 30 2020 06:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47249 * 2 1 4 4 C 1.53004 * 109.46750 * 119.99337 * 2 1 3 5 5 C 1.50699 * 109.46927 * 184.99917 * 4 2 1 6 6 H 1.07998 * 119.99874 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99736 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00127 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99504 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47513 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46931 * 120.00053 * 9 7 5 12 12 H 1.48499 * 109.46932 * 239.99574 * 9 7 5 13 13 O 1.42898 * 109.46946 * 239.99004 * 2 1 3 14 14 C 1.35907 * 116.99570 * 84.82663 * 13 2 1 15 15 C 1.38748 * 120.09187 * 354.60277 * 14 13 2 16 16 C 1.38000 * 119.87811 * 180.02562 * 15 14 13 17 17 C 1.38546 * 120.28959 * 359.97438 * 16 15 14 18 18 C 1.38264 * 119.93891 * 359.97438 * 17 16 15 19 19 C 1.38410 * 119.90209 * 0.02562 * 18 17 16 20 20 C 1.51374 * 109.75580 * 180.02562 * 18 17 16 21 21 H 1.09007 * 110.38375 * 101.77064 * 20 18 17 22 22 O 1.42898 * 110.30145 * 223.87770 * 20 18 17 23 23 C 1.54339 * 105.17348 * 342.80095 * 20 18 17 24 24 C 1.51391 * 130.32509 * 180.02562 * 17 16 15 25 25 H 1.08996 * 109.47227 * 300.00714 * 1 2 3 26 26 H 1.09002 * 109.46807 * 60.00306 * 1 2 3 27 27 H 1.09000 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47081 * 305.00223 * 4 2 1 29 29 H 1.09000 * 109.47045 * 64.99892 * 4 2 1 30 30 H 0.96998 * 119.99940 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.06316 * 0.04453 * 15 14 13 32 32 H 1.07998 * 119.85606 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.91180 * 180.02562 * 19 18 17 34 34 H 0.96706 * 114.00214 * 295.74226 * 22 20 18 35 35 H 1.09001 * 110.81810 * 144.59486 * 23 20 18 36 36 H 1.08999 * 110.82265 * 268.14174 * 23 20 18 37 37 H 1.09007 * 110.29914 * 78.26879 * 24 17 16 38 38 H 1.09000 * 110.30324 * 316.12214 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.6148 1.3129 6 1 4.0789 -0.0855 0.5397 7 6 4.2303 -1.1934 2.3581 8 7 3.5763 -1.8375 3.2998 9 14 6.0921 -1.0622 2.4363 10 1 6.5838 -0.2918 1.2659 11 1 6.4871 -0.3665 3.6875 12 1 6.6854 -2.4234 2.4184 13 8 2.0064 -0.6738 -1.1666 14 6 2.1090 0.0614 -2.3050 15 6 1.6545 1.3721 -2.3300 16 6 1.7604 2.1145 -3.4885 17 6 2.3193 1.5570 -4.6271 18 6 2.7740 0.2515 -4.6043 19 6 2.6690 -0.4956 -3.4439 20 6 3.3362 -0.1183 -5.9603 21 1 4.4255 -0.0823 -5.9423 22 8 2.8901 -1.4206 -6.3436 23 6 2.7811 0.9452 -6.9314 24 6 2.5456 2.1533 -6.0001 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -0.2615 2.1370 29 1 1.7516 -1.7714 1.2058 30 1 4.0607 -2.2448 4.0349 31 1 1.2188 1.8106 -1.4444 32 1 1.4061 3.1345 -3.5077 33 1 3.0245 -1.5153 -3.4258 34 1 3.2082 -2.1303 -5.7689 35 1 3.5139 1.1868 -7.7013 36 1 1.8444 0.6113 -7.3775 37 1 3.4227 2.8005 -5.9914 38 1 1.6658 2.7117 -6.3196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690718339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:55 Heat of formation + Delta-G solvation = -97.617729 kcal Electronic energy + Delta-G solvation = -19446.221507 eV Core-core repulsion = 16445.333673 eV Total energy + Delta-G solvation = -3000.887834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.54083 -39.97610 -37.35890 -35.70356 -34.83596 -33.41785 -31.78456 -29.54729 -29.13238 -27.35238 -25.31587 -23.85869 -22.95064 -21.67778 -20.98028 -19.01795 -18.56939 -18.22815 -17.12296 -16.65874 -16.49834 -16.17295 -15.87206 -15.41780 -14.74543 -14.49069 -14.22300 -14.04620 -13.88214 -13.68102 -13.44208 -13.26002 -12.94840 -12.75200 -12.68703 -12.60689 -12.42560 -12.24387 -12.03047 -11.92216 -11.47907 -11.31929 -11.06781 -10.92997 -10.61733 -9.82172 -8.89525 -8.23820 -6.33064 0.30938 0.48587 1.35839 1.36747 1.49688 2.37792 2.38469 2.73334 3.10531 3.31979 3.54027 3.68749 3.90753 4.04777 4.06915 4.20268 4.20767 4.35459 4.35905 4.42785 4.49804 4.67994 4.76792 4.81782 4.97628 4.98887 5.00174 5.14926 5.18406 5.26322 5.33612 5.35448 5.46882 5.49362 5.61842 5.73459 5.89087 6.16131 6.67884 6.73329 6.78897 7.34638 8.88164 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.004912 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.045381 B = 5699.243384 C = 6250.315517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.531 4.531 6 H 0.049 0.951 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.269 1.269 11 H -0.272 1.272 12 H -0.277 1.277 13 O -0.322 6.322 14 C 0.115 3.885 15 C -0.216 4.216 16 C -0.069 4.069 17 C -0.146 4.146 18 C -0.107 4.107 19 C -0.160 4.160 20 C 0.143 3.857 21 H 0.086 0.914 22 O -0.574 6.574 23 C -0.106 4.106 24 C -0.068 4.068 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.026 0.974 29 H -0.002 1.002 30 H 0.265 0.735 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.122 0.878 34 H 0.390 0.610 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.396 8.604 -18.915 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.569 4.569 6 H 0.067 0.933 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.198 1.198 12 H -0.203 1.203 13 O -0.236 6.236 14 C 0.069 3.931 15 C -0.235 4.235 16 C -0.087 4.087 17 C -0.146 4.146 18 C -0.107 4.107 19 C -0.178 4.178 20 C 0.084 3.916 21 H 0.103 0.897 22 O -0.381 6.381 23 C -0.144 4.144 24 C -0.105 4.105 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.168 0.832 33 H 0.140 0.860 34 H 0.240 0.760 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.629 8.643 -19.185 21.205 hybrid contribution 1.003 -0.678 1.487 1.917 sum -1.626 7.965 -17.698 19.476 Atomic orbital electron populations 1.22313 0.94156 1.02774 1.03192 1.22583 0.93945 0.96054 0.83488 0.91687 1.19125 0.95583 0.95101 0.91074 1.21461 0.93223 1.34445 1.07813 0.93291 1.25854 1.03508 0.94756 0.95213 1.70066 1.37485 1.36732 1.12756 0.85467 0.79686 0.78078 0.78249 1.19346 1.19782 1.20311 1.86173 1.81098 1.39287 1.17042 1.19300 0.95334 0.91439 0.87053 1.21434 1.07234 0.94050 1.00766 1.20691 0.97148 1.00262 0.90601 1.20793 1.01416 0.95125 0.97257 1.21288 0.98617 0.95475 0.95352 1.19882 1.05428 1.01336 0.91186 1.21557 0.97775 0.83917 0.88322 0.89657 1.86469 1.77494 1.16687 1.57483 1.22387 1.02781 0.92171 0.97033 1.21016 1.03732 0.97430 0.88308 0.89877 0.91144 0.92589 0.95544 0.98361 0.92619 0.84591 0.83197 0.86048 0.76019 0.87443 0.90412 0.88462 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.73 9.17 71.98 0.66 -5.07 16 2 C 0.09 4.07 2.17 30.60 0.07 4.14 16 3 H 0.07 2.70 6.32 -2.39 -0.02 2.68 16 4 C 0.03 1.50 4.68 29.85 0.14 1.64 16 5 C -0.53 -31.00 8.88 25.60 0.23 -30.77 16 6 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 7 C 0.00 0.27 5.46 84.66 0.46 0.73 16 8 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 9 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 O -0.32 -14.44 9.55 -92.51 -0.88 -15.32 16 14 C 0.11 4.35 6.59 22.48 0.15 4.50 16 15 C -0.22 -6.95 8.24 22.34 0.18 -6.76 16 16 C -0.07 -1.80 10.03 22.29 0.22 -1.57 16 17 C -0.15 -3.60 6.14 -19.56 -0.12 -3.72 16 18 C -0.11 -2.96 5.82 -19.60 -0.11 -3.07 16 19 C -0.16 -5.42 9.94 22.40 0.22 -5.19 16 20 C 0.14 3.05 4.22 30.52 0.13 3.18 16 21 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 22 O -0.57 -13.06 13.34 -148.98 -1.99 -15.04 16 23 C -0.11 -1.73 6.80 31.51 0.21 -1.52 16 24 C -0.07 -1.10 6.77 30.52 0.21 -0.89 16 25 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.07 2.10 6.90 -2.39 -0.02 2.08 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.14 4.14 5.44 -2.91 -0.02 4.12 16 32 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.39 6.85 9.09 -74.05 -0.67 6.17 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.37 8.11 -2.39 -0.02 1.35 16 37 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.27 315.13 2.47 -67.79 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.39 Total: 16.02 kcal Atomic # 6 Polarization: -47.03 SS G_CDS: 2.65 Total: -44.38 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.28 Total: -56.35 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -2.87 Total: -30.37 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -70.27 2.47 -67.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690718339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.826 kcal (2) G-P(sol) polarization free energy of solvation -70.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds