Wall clock time and date at job start Mon Mar 30 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47331 * 240.00397 * 2 1 3 5 5 C 1.50695 * 109.47298 * 175.00160 * 4 2 1 6 6 H 1.08008 * 120.00007 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00074 * 179.72403 * 5 4 2 8 8 N 1.31517 * 120.00193 * 180.27715 * 7 5 4 9 9 Si 1.86795 * 119.99820 * 0.27099 * 7 5 4 10 10 H 1.48506 * 109.47063 * 90.00508 * 9 7 5 11 11 H 1.48503 * 109.47265 * 209.99929 * 9 7 5 12 12 H 1.48495 * 109.47545 * 330.00217 * 9 7 5 13 13 O 1.42897 * 109.47238 * 120.00193 * 2 1 3 14 14 C 1.35908 * 116.99687 * 275.33946 * 13 2 1 15 15 C 1.38742 * 120.09254 * 5.07479 * 14 13 2 16 16 C 1.38013 * 119.87751 * 179.74242 * 15 14 13 17 17 C 1.38547 * 120.28450 * 0.51668 * 16 15 14 18 18 C 1.38257 * 119.94135 * 359.76084 * 17 16 15 19 19 C 1.38415 * 119.90562 * 359.97438 * 18 17 16 20 20 C 1.51378 * 109.75558 * 179.97438 * 18 17 16 21 21 H 1.08994 * 110.30706 * 258.27494 * 20 18 17 22 22 O 1.42906 * 110.29962 * 136.21911 * 20 18 17 23 23 C 1.54342 * 105.16908 * 17.20254 * 20 18 17 24 24 C 1.51393 * 130.31893 * 179.73175 * 17 16 15 25 25 H 1.09000 * 109.46884 * 59.99701 * 1 2 3 26 26 H 1.08996 * 109.46944 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47105 * 300.00214 * 1 2 3 28 28 H 1.08999 * 109.47084 * 54.99594 * 4 2 1 29 29 H 1.09002 * 109.46780 * 294.99727 * 4 2 1 30 30 H 0.96998 * 119.99868 * 180.02562 * 8 7 5 31 31 H 1.07996 * 120.06372 * 359.97438 * 15 14 13 32 32 H 1.07997 * 119.85512 * 180.25628 * 16 15 14 33 33 H 1.07994 * 119.91496 * 179.97438 * 19 18 17 34 34 H 0.96698 * 114.00131 * 61.45384 * 22 20 18 35 35 H 1.09002 * 110.82525 * 91.86108 * 23 20 18 36 36 H 1.09002 * 110.81617 * 215.39882 * 23 20 18 37 37 H 1.09005 * 110.29846 * 43.89708 * 24 17 16 38 38 H 1.09007 * 110.38487 * 281.79454 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0854 -0.5395 7 6 4.2309 -1.1978 -2.3551 8 7 5.5421 -1.1097 -2.4075 9 14 3.3020 -2.1129 -3.6926 10 1 2.9467 -1.1692 -4.7828 11 1 4.1582 -3.1976 -4.2365 12 1 2.0628 -2.6995 -3.1221 13 8 2.0064 -0.6737 1.1667 14 6 2.1058 0.0609 2.3059 15 6 1.6542 1.3726 2.3295 16 6 1.7525 2.1127 3.4902 17 6 2.3100 1.5551 4.6293 18 6 2.7659 0.2500 4.6066 19 6 2.6637 -0.4965 3.4456 20 6 3.3262 -0.1199 5.9634 21 1 4.4153 -0.0817 5.9461 22 8 2.8826 -1.4239 6.3442 23 6 2.7683 0.9425 6.9340 24 6 2.5329 2.1508 6.0032 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6054 -0.2616 -2.1370 29 1 1.7517 -1.7714 -1.2056 30 1 6.0267 -1.5195 -3.1411 31 1 1.2232 1.8124 1.4423 32 1 1.3971 3.1324 3.5093 33 1 3.0202 -1.5158 3.4275 34 1 3.1682 -2.1271 5.7450 35 1 1.8311 0.6073 7.3784 36 1 3.4994 1.1843 7.7055 37 1 1.6515 2.7075 6.3215 38 1 3.4083 2.8003 5.9979 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690718890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:00 Heat of formation + Delta-G solvation = -72.890299 kcal Electronic energy + Delta-G solvation = -19452.900437 eV Core-core repulsion = 16453.084865 eV Total energy + Delta-G solvation = -2999.815572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37767 -38.72387 -36.27959 -34.31347 -33.20988 -31.83385 -30.61336 -28.32890 -27.91311 -26.37456 -23.20909 -22.73788 -21.36478 -20.74092 -19.58519 -17.78571 -17.21263 -16.76630 -15.88336 -15.45097 -15.23228 -14.53363 -14.43505 -14.13257 -13.50921 -13.10254 -13.02071 -12.93693 -12.53989 -12.29684 -12.12641 -11.87024 -11.71641 -11.69602 -11.60298 -11.25186 -10.84326 -10.81130 -10.65207 -10.23027 -10.01712 -9.74774 -9.58024 -9.25065 -8.65282 -8.57170 -7.64777 -6.05957 -4.04222 1.48561 1.68695 3.27366 3.35915 3.38576 3.72313 3.90948 4.18828 4.42121 4.50372 4.61486 4.96340 5.08873 5.14116 5.26913 5.31776 5.42640 5.47924 5.49964 5.56312 5.61441 5.72733 5.76313 5.86085 5.90847 6.03384 6.09411 6.27558 6.37866 6.45291 6.53513 6.69918 6.74682 6.89442 7.05375 7.19362 7.54906 7.69783 8.06626 8.49480 8.98722 9.54547 11.07569 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.004619 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.980711 B = 6060.341833 C = 6434.612067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.095 3.905 3 H 0.068 0.932 4 C -0.011 4.011 5 C -0.516 4.516 6 H 0.073 0.927 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.877 3.123 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.265 1.265 13 O -0.289 6.289 14 C 0.154 3.846 15 C -0.208 4.208 16 C -0.068 4.068 17 C -0.146 4.146 18 C -0.099 4.099 19 C -0.140 4.140 20 C 0.147 3.853 21 H 0.073 0.927 22 O -0.562 6.562 23 C -0.110 4.110 24 C -0.072 4.072 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.263 0.737 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.381 0.619 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 5.076 14.798 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.040 3.960 3 H 0.086 0.914 4 C -0.048 4.048 5 C -0.554 4.554 6 H 0.091 0.909 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.704 3.296 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.190 1.190 13 O -0.202 6.202 14 C 0.107 3.893 15 C -0.226 4.226 16 C -0.086 4.086 17 C -0.147 4.147 18 C -0.099 4.099 19 C -0.159 4.159 20 C 0.088 3.912 21 H 0.090 0.910 22 O -0.368 6.368 23 C -0.148 4.148 24 C -0.110 4.110 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.229 0.771 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.976 5.146 15.128 17.860 hybrid contribution -0.115 -0.577 -1.538 1.647 sum -8.092 4.570 13.590 16.463 Atomic orbital electron populations 1.22453 0.96886 1.02694 1.01778 1.22577 0.91646 0.97185 0.84616 0.91399 1.19729 0.98115 0.96511 0.90453 1.21004 0.89336 1.35276 1.09750 0.90935 1.24993 0.94741 0.95761 0.97854 1.69911 1.06496 1.45256 1.32351 0.86822 0.80341 0.80080 0.82316 1.20252 1.21243 1.18961 1.86245 1.79952 1.37984 1.16004 1.18938 0.92904 0.90182 0.87326 1.21281 1.07218 0.94659 0.99486 1.20326 0.97857 0.99069 0.91321 1.20217 1.03343 0.95358 0.95747 1.20876 0.98980 0.95091 0.95003 1.19692 1.04665 1.00997 0.90500 1.21333 0.97080 0.83457 0.89346 0.90980 1.86481 1.79255 1.16445 1.54651 1.22316 1.02282 0.93192 0.96980 1.20903 1.02020 0.97158 0.90874 0.91329 0.91891 0.92870 0.94914 0.95324 0.92704 0.84957 0.86333 0.85648 0.77107 0.89911 0.90141 0.90775 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 9.17 37.16 0.34 -2.53 16 2 C 0.10 1.91 2.17 -26.73 -0.06 1.85 16 3 H 0.07 1.34 6.31 -51.93 -0.33 1.01 16 4 C -0.01 -0.26 3.75 -27.88 -0.10 -0.36 16 5 C -0.52 -14.71 9.43 -34.44 -0.32 -15.04 16 6 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 9 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 13 O -0.29 -6.12 9.55 -19.45 -0.19 -6.31 16 14 C 0.15 2.85 6.59 -39.26 -0.26 2.59 16 15 C -0.21 -3.38 8.23 -39.48 -0.33 -3.71 16 16 C -0.07 -0.96 10.03 -39.55 -0.40 -1.36 16 17 C -0.15 -2.02 6.14 -104.16 -0.64 -2.66 16 18 C -0.10 -1.45 5.81 -104.22 -0.61 -2.06 16 19 C -0.14 -2.35 9.87 -39.38 -0.39 -2.74 16 20 C 0.15 1.77 4.22 -26.85 -0.11 1.65 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 22 O -0.56 -6.89 13.36 -35.23 -0.47 -7.36 16 23 C -0.11 -1.12 6.80 -25.33 -0.17 -1.29 16 24 C -0.07 -0.75 6.77 -26.85 -0.18 -0.93 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.76 6.91 -51.93 -0.36 0.40 16 28 H 0.03 0.73 7.58 -51.93 -0.39 0.34 16 29 H 0.03 0.69 7.19 -51.93 -0.37 0.32 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.13 2.02 5.44 -52.49 -0.29 1.73 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.38 3.55 9.01 45.56 0.41 3.96 16 35 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 311.38 15.07 4.69 4.69 Total: -1.00 -32.64 311.38 -7.90 -40.54 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.72 Total: 3.43 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -3.33 Total: -24.70 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.77 Total: -27.09 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.66 Total: -13.67 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.64 -7.90 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690718890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.350 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds