Wall clock time and date at job start Mon Mar 30 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47331 * 240.00397 * 2 1 3 5 5 C 1.50695 * 109.47298 * 175.00160 * 4 2 1 6 6 H 1.08008 * 120.00007 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00074 * 179.72403 * 5 4 2 8 8 N 1.31517 * 120.00193 * 180.27715 * 7 5 4 9 9 Si 1.86795 * 119.99820 * 0.27099 * 7 5 4 10 10 H 1.48506 * 109.47063 * 90.00508 * 9 7 5 11 11 H 1.48503 * 109.47265 * 209.99929 * 9 7 5 12 12 H 1.48495 * 109.47545 * 330.00217 * 9 7 5 13 13 O 1.42897 * 109.47238 * 120.00193 * 2 1 3 14 14 C 1.35908 * 116.99687 * 275.33946 * 13 2 1 15 15 C 1.38742 * 120.09254 * 5.07479 * 14 13 2 16 16 C 1.38013 * 119.87751 * 179.74242 * 15 14 13 17 17 C 1.38547 * 120.28450 * 0.51668 * 16 15 14 18 18 C 1.38257 * 119.94135 * 359.76084 * 17 16 15 19 19 C 1.38415 * 119.90562 * 359.97438 * 18 17 16 20 20 C 1.51378 * 109.75558 * 179.97438 * 18 17 16 21 21 H 1.08994 * 110.30706 * 258.27494 * 20 18 17 22 22 O 1.42906 * 110.29962 * 136.21911 * 20 18 17 23 23 C 1.54342 * 105.16908 * 17.20254 * 20 18 17 24 24 C 1.51393 * 130.31893 * 179.73175 * 17 16 15 25 25 H 1.09000 * 109.46884 * 59.99701 * 1 2 3 26 26 H 1.08996 * 109.46944 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47105 * 300.00214 * 1 2 3 28 28 H 1.08999 * 109.47084 * 54.99594 * 4 2 1 29 29 H 1.09002 * 109.46780 * 294.99727 * 4 2 1 30 30 H 0.96998 * 119.99868 * 180.02562 * 8 7 5 31 31 H 1.07996 * 120.06372 * 359.97438 * 15 14 13 32 32 H 1.07997 * 119.85512 * 180.25628 * 16 15 14 33 33 H 1.07994 * 119.91496 * 179.97438 * 19 18 17 34 34 H 0.96698 * 114.00131 * 61.45384 * 22 20 18 35 35 H 1.09002 * 110.82525 * 91.86108 * 23 20 18 36 36 H 1.09002 * 110.81617 * 215.39882 * 23 20 18 37 37 H 1.09005 * 110.29846 * 43.89708 * 24 17 16 38 38 H 1.09007 * 110.38487 * 281.79454 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0854 -0.5395 7 6 4.2309 -1.1978 -2.3551 8 7 5.5421 -1.1097 -2.4075 9 14 3.3020 -2.1129 -3.6926 10 1 2.9467 -1.1692 -4.7828 11 1 4.1582 -3.1976 -4.2365 12 1 2.0628 -2.6995 -3.1221 13 8 2.0064 -0.6737 1.1667 14 6 2.1058 0.0609 2.3059 15 6 1.6542 1.3726 2.3295 16 6 1.7525 2.1127 3.4902 17 6 2.3100 1.5551 4.6293 18 6 2.7659 0.2500 4.6066 19 6 2.6637 -0.4965 3.4456 20 6 3.3262 -0.1199 5.9634 21 1 4.4153 -0.0817 5.9461 22 8 2.8826 -1.4239 6.3442 23 6 2.7683 0.9425 6.9340 24 6 2.5329 2.1508 6.0032 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6054 -0.2616 -2.1370 29 1 1.7517 -1.7714 -1.2056 30 1 6.0267 -1.5195 -3.1411 31 1 1.2232 1.8124 1.4423 32 1 1.3971 3.1324 3.5093 33 1 3.0202 -1.5158 3.4275 34 1 3.1682 -2.1271 5.7450 35 1 1.8311 0.6073 7.3784 36 1 3.4994 1.1843 7.7055 37 1 1.6515 2.7075 6.3215 38 1 3.4083 2.8003 5.9979 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690718890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:59 Heat of formation + Delta-G solvation = -95.007366 kcal Electronic energy + Delta-G solvation = -19453.859505 eV Core-core repulsion = 16453.084865 eV Total energy + Delta-G solvation = -3000.774640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.55968 -40.00183 -37.37339 -35.68803 -34.82422 -33.58429 -31.85353 -29.88363 -29.25233 -27.37068 -25.00308 -23.87170 -22.86253 -21.69088 -20.99129 -19.12979 -18.87722 -18.21811 -17.14572 -16.63588 -16.54293 -16.10007 -15.85653 -15.42890 -14.82463 -14.56421 -14.28831 -14.11950 -14.04905 -13.78832 -13.58912 -13.29299 -12.98180 -12.74109 -12.66213 -12.49038 -12.30578 -12.18550 -11.99971 -11.76409 -11.55396 -11.34408 -11.17114 -10.96390 -10.79025 -9.83681 -8.91095 -8.30196 -6.34667 0.29308 0.46979 1.34546 1.37908 1.49369 2.34896 2.36017 2.72151 3.05731 3.29426 3.52349 3.67432 3.88478 4.01204 4.05421 4.15475 4.18865 4.33030 4.34561 4.40933 4.47796 4.67360 4.77642 4.80345 4.91753 4.96511 4.98630 5.03672 5.13939 5.21518 5.25310 5.28914 5.38376 5.46346 5.59513 5.60321 5.86916 6.22678 6.63208 6.70574 6.72801 7.28125 8.87250 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.004619 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.980711 B = 6060.341833 C = 6434.612067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 H 0.061 0.939 4 C -0.010 4.010 5 C -0.524 4.524 6 H 0.022 0.978 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.953 3.047 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.246 1.246 13 O -0.323 6.323 14 C 0.115 3.885 15 C -0.216 4.216 16 C -0.070 4.070 17 C -0.146 4.146 18 C -0.108 4.108 19 C -0.161 4.161 20 C 0.143 3.857 21 H 0.083 0.917 22 O -0.573 6.573 23 C -0.106 4.106 24 C -0.068 4.068 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.025 0.975 30 H 0.266 0.734 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.120 0.880 34 H 0.390 0.610 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.836 6.036 15.663 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.039 3.961 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.562 4.562 6 H 0.041 0.959 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.776 3.224 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.169 1.169 13 O -0.237 6.237 14 C 0.069 3.931 15 C -0.234 4.234 16 C -0.088 4.088 17 C -0.146 4.146 18 C -0.109 4.109 19 C -0.180 4.180 20 C 0.084 3.916 21 H 0.100 0.900 22 O -0.380 6.380 23 C -0.143 4.143 24 C -0.105 4.105 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.169 0.831 33 H 0.138 0.862 34 H 0.239 0.761 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.922 6.117 16.014 19.807 hybrid contribution 0.588 -0.820 -1.657 1.940 sum -9.334 5.297 14.357 17.925 Atomic orbital electron populations 1.22344 0.93290 1.03315 1.03614 1.22483 0.94316 0.95971 0.83285 0.92107 1.19698 0.94677 0.97007 0.93356 1.21276 0.92146 1.34472 1.08350 0.95934 1.26042 0.95643 0.96817 1.00854 1.70083 1.08674 1.46912 1.33712 0.85619 0.79273 0.78706 0.78812 1.18381 1.21140 1.16942 1.86150 1.81220 1.39305 1.17021 1.19266 0.95334 0.91483 0.86971 1.21444 1.07308 0.93949 1.00737 1.20708 0.97174 1.00288 0.90581 1.20802 1.01367 0.95079 0.97341 1.21294 0.98627 0.95576 0.95379 1.19890 1.05389 1.01401 0.91311 1.21560 0.97686 0.83949 0.88406 0.89969 1.86454 1.79538 1.16958 1.55093 1.22384 1.02808 0.92100 0.96991 1.21015 1.03780 0.97431 0.88267 0.89095 0.91844 0.91374 0.92895 0.95636 0.92500 0.84390 0.83094 0.86171 0.76056 0.90219 0.87482 0.88631 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.10 9.17 71.98 0.66 -4.44 16 2 C 0.10 3.85 2.17 30.60 0.07 3.92 16 3 H 0.06 2.48 6.31 -2.38 -0.02 2.47 16 4 C -0.01 -0.48 3.75 29.85 0.11 -0.37 16 5 C -0.52 -31.12 9.43 25.60 0.24 -30.88 16 6 H 0.02 1.50 7.99 -2.91 -0.02 1.48 16 7 C 0.00 0.17 5.47 84.65 0.46 0.63 16 8 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 9 Si 0.95 44.31 27.47 68.60 1.88 46.19 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 13 O -0.32 -14.32 9.55 -92.52 -0.88 -15.20 16 14 C 0.12 4.46 6.59 22.48 0.15 4.60 16 15 C -0.22 -7.04 8.23 22.34 0.18 -6.86 16 16 C -0.07 -1.86 10.03 22.29 0.22 -1.64 16 17 C -0.15 -3.74 6.14 -19.57 -0.12 -3.86 16 18 C -0.11 -3.13 5.81 -19.60 -0.11 -3.25 16 19 C -0.16 -5.67 9.87 22.40 0.22 -5.45 16 20 C 0.14 3.23 4.22 30.52 0.13 3.36 16 21 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 22 O -0.57 -13.58 13.36 -148.98 -1.99 -15.58 16 23 C -0.11 -1.81 6.80 31.50 0.21 -1.59 16 24 C -0.07 -1.16 6.77 30.52 0.21 -0.95 16 25 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 1.85 6.91 -2.39 -0.02 1.83 16 28 H 0.05 2.28 7.58 -2.39 -0.02 2.27 16 29 H 0.03 1.21 7.19 -2.39 -0.02 1.20 16 30 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.14 4.19 5.44 -2.91 -0.02 4.17 16 32 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 34 H 0.39 7.34 9.01 -74.06 -0.67 6.67 16 35 H 0.08 1.44 8.11 -2.39 -0.02 1.42 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -74.03 311.38 2.28 -71.75 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.34 Total: 20.40 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 2.64 Total: -46.77 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.30 Total: -60.79 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -2.87 Total: -30.78 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -74.03 2.28 -71.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690718890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.261 kcal (2) G-P(sol) polarization free energy of solvation -74.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds