Wall clock time and date at job start Mon Mar 30 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47481 * 2 1 4 4 C 1.53000 * 109.47419 * 239.99505 * 2 1 3 5 5 C 1.50704 * 109.47416 * 175.00010 * 4 2 1 6 6 H 1.08006 * 119.99638 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00011 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99640 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47257 * 90.00549 * 9 7 5 11 11 H 1.48507 * 109.46693 * 210.00134 * 9 7 5 12 12 H 1.48501 * 109.47127 * 329.99748 * 9 7 5 13 13 O 1.42902 * 109.47256 * 119.99747 * 2 1 3 14 14 C 1.35898 * 116.99969 * 275.16627 * 13 2 1 15 15 C 1.38743 * 120.09531 * 5.48022 * 14 13 2 16 16 C 1.38009 * 119.88187 * 179.97438 * 15 14 13 17 17 C 1.38539 * 120.29120 * 359.97438 * 16 15 14 18 18 C 1.38264 * 119.93441 * 0.02562 * 17 16 15 19 19 C 1.38411 * 119.90545 * 0.02562 * 18 17 16 20 20 C 1.51382 * 109.75469 * 179.97438 * 18 17 16 21 21 H 1.08999 * 110.30433 * 136.12766 * 20 18 17 22 22 O 1.42905 * 110.30457 * 258.27845 * 20 18 17 23 23 C 1.54340 * 105.16883 * 17.20011 * 20 18 17 24 24 C 1.51393 * 130.32692 * 179.97438 * 17 16 15 25 25 H 1.09001 * 109.46813 * 60.00500 * 1 2 3 26 26 H 1.08999 * 109.46862 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46905 * 299.99899 * 1 2 3 28 28 H 1.08996 * 109.47459 * 295.00562 * 4 2 1 29 29 H 1.09002 * 109.46601 * 55.00475 * 4 2 1 30 30 H 0.96995 * 119.99756 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.05729 * 359.96219 * 15 14 13 32 32 H 1.07998 * 119.85432 * 179.97438 * 16 15 14 33 33 H 1.08003 * 119.91110 * 180.02562 * 19 18 17 34 34 H 0.96700 * 113.99331 * 295.74658 * 22 20 18 35 35 H 1.08997 * 110.82057 * 91.85788 * 23 20 18 36 36 H 1.09005 * 110.82044 * 215.39964 * 23 20 18 37 37 H 1.09000 * 110.29736 * 43.89561 * 24 17 16 38 38 H 1.08998 * 110.29888 * 281.74616 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5391 7 6 4.2305 -1.1928 -2.3582 8 7 5.5411 -1.0996 -2.4138 9 14 3.3016 -2.1081 -3.6957 10 1 2.9399 -1.1631 -4.7825 11 1 4.1605 -3.1882 -4.2443 12 1 2.0661 -2.7007 -3.1233 13 8 2.0064 -0.6736 1.1668 14 6 2.1092 0.0618 2.3050 15 6 1.6533 1.3720 2.3303 16 6 1.7594 2.1146 3.4887 17 6 2.3190 1.5576 4.6271 18 6 2.7741 0.2522 4.6043 19 6 2.6699 -0.4948 3.4437 20 6 3.3371 -0.1172 5.9601 21 1 2.9974 -1.1107 6.2528 22 8 4.7650 -0.0678 5.9343 23 6 2.7820 0.9463 6.9312 24 6 2.5457 2.1542 5.9999 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7517 -1.7716 -1.2055 29 1 1.6055 -0.2618 -2.1369 30 1 6.0254 -1.5064 -3.1492 31 1 1.2162 1.8099 1.4451 32 1 1.4048 3.1345 3.5078 33 1 3.0250 -1.5146 3.4259 34 1 5.1701 -0.7146 5.3404 35 1 1.8455 0.6120 7.3778 36 1 3.5149 1.1882 7.7010 37 1 1.6656 2.7121 6.3198 38 1 3.4223 2.8019 5.9907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690718893.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:01 Heat of formation + Delta-G solvation = -93.840123 kcal Electronic energy + Delta-G solvation = -19467.824537 eV Core-core repulsion = 16467.100512 eV Total energy + Delta-G solvation = -3000.724025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56157 -40.01901 -37.36961 -35.60736 -34.70707 -33.58341 -31.93854 -29.88968 -29.25686 -27.44806 -24.99729 -23.88711 -22.82851 -21.67109 -20.97930 -19.18652 -18.91785 -18.21556 -17.13267 -16.63563 -16.27372 -16.10422 -15.81660 -15.24930 -14.86102 -14.72815 -14.46679 -14.22795 -14.09288 -13.78943 -13.61560 -13.30677 -12.92850 -12.77783 -12.53674 -12.37960 -12.29526 -12.17344 -11.87001 -11.69204 -11.65240 -11.31169 -11.17624 -10.96513 -10.79038 -9.90541 -8.91987 -8.30020 -6.34656 0.26873 0.46837 1.34611 1.37938 1.49453 2.34879 2.35613 2.71083 3.05861 3.32610 3.51110 3.73503 3.88629 4.00827 4.05981 4.15853 4.17464 4.29810 4.37116 4.43897 4.48807 4.72390 4.78198 4.80342 4.92127 4.96267 5.00661 5.03779 5.14608 5.21368 5.25767 5.27784 5.37457 5.45695 5.59718 5.62856 5.86533 6.22744 6.63208 6.70993 6.72854 7.28139 8.87494 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.004733 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.291331 B = 5914.175338 C = 6507.837093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 H 0.060 0.940 4 C -0.010 4.010 5 C -0.525 4.525 6 H 0.021 0.979 7 C 0.002 3.998 8 N -0.953 5.953 9 Si 0.954 3.046 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.245 1.245 13 O -0.322 6.322 14 C 0.113 3.887 15 C -0.211 4.211 16 C -0.074 4.074 17 C -0.137 4.137 18 C -0.111 4.111 19 C -0.156 4.156 20 C 0.143 3.857 21 H 0.079 0.921 22 O -0.571 6.571 23 C -0.108 4.108 24 C -0.071 4.071 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.053 0.947 30 H 0.266 0.734 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.390 0.610 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.493 4.680 16.027 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.039 3.961 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.563 4.563 6 H 0.040 0.960 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.776 3.224 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.169 1.169 13 O -0.237 6.237 14 C 0.067 3.933 15 C -0.230 4.230 16 C -0.092 4.092 17 C -0.138 4.138 18 C -0.112 4.112 19 C -0.175 4.175 20 C 0.084 3.916 21 H 0.097 0.903 22 O -0.379 6.379 23 C -0.145 4.145 24 C -0.108 4.108 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.167 0.833 33 H 0.139 0.861 34 H 0.240 0.760 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.411 4.906 16.320 20.509 hybrid contribution 0.503 -0.862 -1.617 1.901 sum -10.908 4.045 14.702 18.748 Atomic orbital electron populations 1.22343 0.93171 1.03370 1.03639 1.22484 0.94396 0.95908 0.83291 0.92247 1.19698 0.94628 0.97042 0.93366 1.21280 0.92198 1.34638 1.08183 0.96026 1.26053 0.95649 0.96829 1.00863 1.70083 1.08749 1.46954 1.33613 0.85610 0.79273 0.78703 0.78768 1.18407 1.21139 1.16865 1.86147 1.81267 1.39188 1.17054 1.19268 0.95484 0.91470 0.87033 1.21448 1.06929 0.93968 1.00640 1.20704 0.97500 1.00242 0.90715 1.20866 1.00799 0.95008 0.97098 1.21248 0.98796 0.95406 0.95730 1.19975 1.04866 1.01325 0.91358 1.21382 0.80499 1.00298 0.89426 0.90291 1.86473 1.18923 1.63648 1.68818 1.22383 1.02147 0.93300 0.96665 1.21022 1.02874 0.97999 0.88899 0.89141 0.91749 0.91286 0.95557 0.92918 0.92501 0.84367 0.83290 0.86118 0.76029 0.87538 0.88676 0.88368 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 9.17 71.98 0.66 -4.36 16 2 C 0.09 3.83 2.17 30.59 0.07 3.90 16 3 H 0.06 2.43 6.32 -2.39 -0.02 2.42 16 4 C -0.01 -0.48 3.75 29.85 0.11 -0.37 16 5 C -0.53 -31.23 9.43 25.60 0.24 -30.99 16 6 H 0.02 1.45 7.99 -2.91 -0.02 1.43 16 7 C 0.00 0.14 5.47 84.66 0.46 0.61 16 8 N -0.95 -61.30 13.96 21.45 0.30 -61.01 16 9 Si 0.95 44.32 27.47 68.60 1.88 46.21 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.25 -10.53 6.54 99.48 0.65 -9.87 16 13 O -0.32 -14.22 9.55 -92.40 -0.88 -15.11 16 14 C 0.11 4.36 6.59 22.48 0.15 4.50 16 15 C -0.21 -6.91 8.24 22.34 0.18 -6.73 16 16 C -0.07 -2.01 10.03 22.29 0.22 -1.79 16 17 C -0.14 -3.64 6.14 -19.57 -0.12 -3.76 16 18 C -0.11 -3.21 5.81 -19.60 -0.11 -3.33 16 19 C -0.16 -5.46 9.98 22.40 0.22 -5.23 16 20 C 0.14 3.21 4.22 30.52 0.13 3.34 16 21 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 22 O -0.57 -14.08 13.35 -148.98 -1.99 -16.07 16 23 C -0.11 -1.83 6.81 31.51 0.21 -1.62 16 24 C -0.07 -1.35 6.77 30.52 0.21 -1.14 16 25 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 1.83 6.90 -2.39 -0.02 1.82 16 28 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 29 H 0.05 2.27 7.57 -2.39 -0.02 2.25 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.14 4.20 5.43 -2.91 -0.02 4.19 16 32 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.39 7.93 9.12 -74.06 -0.68 7.25 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.47 8.10 -2.38 -0.02 1.45 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -74.01 311.58 2.28 -71.73 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.33 Total: 21.23 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 2.64 Total: -46.98 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.30 Total: -61.01 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -2.87 Total: -31.18 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.21 kcal Total: -74.01 2.28 -71.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690718893.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.114 kcal (2) G-P(sol) polarization free energy of solvation -74.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds