Wall clock time and date at job start Mon Mar 30 2020 06:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21215 * 120.00520 * 2 1 4 4 C 1.47526 * 119.99889 * 180.02562 * 2 1 3 5 5 C 1.39381 * 119.70217 * 180.02562 * 4 2 1 6 6 C 1.38766 * 119.20923 * 179.97438 * 5 4 2 7 7 C 1.38294 * 118.59291 * 359.73396 * 6 5 4 8 8 C 1.39562 * 119.33302 * 0.50717 * 7 6 5 9 9 N 1.38965 * 119.62516 * 179.75227 * 8 7 6 10 10 C 1.46500 * 119.99857 * 170.09367 * 9 8 7 11 11 C 1.50695 * 109.47007 * 269.99959 * 10 9 8 12 12 H 1.08007 * 120.00349 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00363 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99365 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00460 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47070 * 0.02562 * 15 13 11 17 17 H 1.48492 * 109.47157 * 120.00132 * 15 13 11 18 18 H 1.48506 * 109.47054 * 240.00132 * 15 13 11 19 19 C 1.46501 * 120.00090 * 350.09160 * 9 8 7 20 20 C 1.52994 * 109.47249 * 234.42261 * 19 9 8 21 21 C 1.53006 * 109.46932 * 114.42154 * 19 9 8 22 22 N 1.31996 * 120.74729 * 359.47775 * 8 7 6 23 23 H 1.08995 * 109.47428 * 239.99752 * 1 2 3 24 24 H 1.08999 * 109.47000 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46559 * 120.00027 * 1 2 3 26 26 H 1.08004 * 120.39500 * 359.97438 * 5 4 2 27 27 H 1.07999 * 120.69942 * 180.02562 * 6 5 4 28 28 H 1.08002 * 120.33384 * 180.25837 * 7 6 5 29 29 H 1.09000 * 109.46848 * 29.99891 * 10 9 8 30 30 H 1.08994 * 109.47090 * 149.99896 * 10 9 8 31 31 H 0.97001 * 120.00184 * 180.02562 * 14 13 11 32 32 H 1.08996 * 109.46946 * 354.43017 * 19 9 8 33 33 H 1.08995 * 109.47094 * 296.43984 * 20 19 9 34 34 H 1.09003 * 109.46449 * 56.43920 * 20 19 9 35 35 H 1.08998 * 109.47261 * 176.43516 * 20 19 9 36 36 H 1.08997 * 109.47219 * 183.56844 * 21 19 9 37 37 H 1.08996 * 109.47597 * 303.57334 * 21 19 9 38 38 H 1.09007 * 109.46752 * 63.57276 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0497 0.0000 4 6 2.2446 -1.2776 -0.0006 5 6 3.6384 -1.2704 0.0000 6 6 4.3218 -2.4781 0.0000 7 6 3.5910 -3.6522 0.0051 8 6 2.1968 -3.5897 -0.0007 9 7 1.4565 -4.7657 -0.0009 10 6 0.0077 -4.7192 0.2114 11 6 -0.2879 -4.8301 1.6849 12 1 0.5224 -4.9261 2.3926 13 6 -1.5927 -4.8090 2.1299 14 7 -2.5794 -4.6926 1.2682 15 14 -1.9591 -4.9457 3.9565 16 1 -0.6847 -5.0652 4.7093 17 1 -2.6879 -3.7331 4.4073 18 1 -2.7959 -6.1472 4.2049 19 6 2.1248 -6.0520 -0.2134 20 6 1.4540 -6.7897 -1.3738 21 6 2.0194 -6.8975 1.0575 22 7 1.5735 -2.4262 -0.0007 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3632 -0.5138 -0.8900 26 1 4.1800 -0.3360 0.0004 27 1 5.4016 -2.5006 0.0008 28 1 4.0942 -4.6078 0.0094 29 1 -0.3850 -3.7758 -0.1680 30 1 -0.4637 -5.5477 -0.3171 31 1 -3.4974 -4.6774 1.5811 32 1 3.1749 -5.8810 -0.4499 33 1 0.4207 -7.0165 -1.1113 34 1 1.4731 -6.1605 -2.2637 35 1 1.9903 -7.7174 -1.5731 36 1 2.5705 -7.8280 0.9215 37 1 2.4407 -6.3451 1.8974 38 1 0.9718 -7.1217 1.2588 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690987314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:47 Heat of formation + Delta-G solvation = 5.479757 kcal Electronic energy + Delta-G solvation = -20009.549790 eV Core-core repulsion = 17045.425350 eV Total energy + Delta-G solvation = -2964.124440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.08995 -38.63367 -36.79157 -32.97249 -32.33320 -31.86815 -29.59881 -29.21547 -26.83281 -26.70894 -24.22262 -22.90897 -21.90522 -20.26447 -18.90180 -17.21689 -16.49493 -16.02248 -15.39592 -15.35731 -14.84629 -14.62036 -14.13710 -13.89590 -13.53460 -13.41258 -12.77845 -12.65434 -12.34273 -11.99486 -11.82475 -11.71152 -11.66128 -11.56658 -11.16516 -11.04375 -10.83931 -10.57103 -10.33592 -10.08243 -9.88289 -9.74978 -9.40790 -9.06622 -8.72743 -8.42943 -6.83770 -6.02720 -4.08510 0.97604 1.93472 2.71098 3.26174 3.34908 3.38071 3.64667 4.28628 4.39144 4.45940 4.95589 5.20723 5.28457 5.34870 5.45340 5.51478 5.57271 5.61705 5.70144 5.81265 5.95087 5.98035 6.01208 6.12630 6.23807 6.35692 6.36359 6.43955 6.58480 6.62006 6.82515 6.95465 7.13198 7.48802 7.61519 7.84844 7.96687 8.24853 8.28031 8.74158 8.97768 9.55292 11.01866 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.008230 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.881771 B = 3401.181509 C = 4669.495020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.418 3.582 3 O -0.465 6.465 4 C 0.092 3.908 5 C -0.202 4.202 6 C -0.048 4.048 7 C -0.230 4.230 8 C 0.418 3.582 9 N -0.583 5.583 10 C 0.251 3.749 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.890 3.110 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.147 3.853 20 C -0.160 4.160 21 C -0.158 4.158 22 N -0.488 5.488 23 H 0.103 0.897 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.770 -0.077 -4.092 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.296 3.704 3 O -0.339 6.339 4 C -0.046 4.046 5 C -0.227 4.227 6 C -0.074 4.074 7 C -0.256 4.256 8 C 0.179 3.821 9 N -0.292 5.292 10 C 0.132 3.868 11 C -0.556 4.556 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.718 3.282 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.211 1.211 19 C 0.042 3.958 20 C -0.219 4.219 21 C -0.216 4.216 22 N -0.208 5.208 23 H 0.121 0.879 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.817 0.312 -4.106 9.731 hybrid contribution 0.547 -0.308 1.168 1.326 sum 9.364 0.004 -2.939 9.814 Atomic orbital electron populations 1.22067 0.92488 1.03501 1.06129 1.22514 0.92222 0.86255 0.69408 1.90477 1.72722 1.33609 1.37097 1.21294 0.91342 0.93079 0.98902 1.21728 0.94348 0.98905 1.07686 1.21142 0.99596 0.91636 0.95009 1.21713 0.93615 0.99421 1.10857 1.18348 0.87463 0.86818 0.89482 1.47226 1.09462 1.00688 1.71776 1.19295 0.72561 0.98716 0.96255 1.21526 0.91900 1.49691 0.92522 0.92528 1.24890 0.96205 0.95451 0.97446 1.69935 0.99222 1.50582 1.33583 0.86574 0.78260 0.77632 0.85746 1.19952 1.20992 1.21088 1.20941 0.95882 0.83645 0.95285 1.22155 1.02353 0.99504 0.97840 1.22182 1.04019 0.98148 0.97248 1.67275 1.39493 0.96452 1.17584 0.87891 0.90751 0.88464 0.85143 0.85347 0.85182 0.93257 0.95103 0.92914 0.90743 0.91184 0.92817 0.92290 0.93281 0.92749 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.80 36.01 0.35 -2.54 16 2 C 0.42 7.29 7.24 -30.52 -0.22 7.07 16 3 O -0.47 -8.59 17.05 5.61 0.10 -8.49 16 4 C 0.09 1.70 6.73 -83.14 -0.56 1.14 16 5 C -0.20 -3.26 9.63 -38.96 -0.38 -3.64 16 6 C -0.05 -0.70 10.16 -39.37 -0.40 -1.10 16 7 C -0.23 -3.68 9.25 -39.07 -0.36 -4.04 16 8 C 0.42 8.17 7.34 -155.24 -1.14 7.03 16 9 N -0.58 -11.65 2.50 -167.61 -0.42 -12.07 16 10 C 0.25 6.03 4.85 -5.20 -0.03 6.00 16 11 C -0.52 -13.57 7.97 -34.44 -0.27 -13.84 16 12 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 15 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 C 0.15 2.37 3.11 -67.93 -0.21 2.16 16 20 C -0.16 -2.36 8.96 37.15 0.33 -2.03 16 21 C -0.16 -2.55 8.51 37.16 0.32 -2.23 16 22 N -0.49 -10.00 8.49 -9.08 -0.08 -10.07 16 23 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 24 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 25 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.13 1.93 7.63 -52.48 -0.40 1.53 16 27 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.13 1.77 5.93 -52.49 -0.31 1.46 16 29 H 0.05 1.31 7.25 -51.93 -0.38 0.94 16 30 H 0.03 0.77 6.23 -51.93 -0.32 0.45 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.07 1.03 5.47 -51.93 -0.28 0.75 16 33 H 0.07 1.17 6.68 -51.93 -0.35 0.82 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.49 7.18 -51.93 -0.37 1.11 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -29.29 318.48 -7.88 -37.17 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.33 Total: 1.42 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.66 Total: -4.45 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.24 Total: -46.52 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.10 Total: -8.49 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.29 -7.88 -37.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690987314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.649 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds