Wall clock time and date at job start Mon Mar 30 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21215 * 120.00520 * 2 1 4 4 C 1.47526 * 119.99889 * 180.02562 * 2 1 3 5 5 C 1.39381 * 119.70217 * 180.02562 * 4 2 1 6 6 C 1.38766 * 119.20923 * 179.97438 * 5 4 2 7 7 C 1.38294 * 118.59291 * 359.73396 * 6 5 4 8 8 C 1.39562 * 119.33302 * 0.50717 * 7 6 5 9 9 N 1.38965 * 119.62516 * 179.75227 * 8 7 6 10 10 C 1.46500 * 119.99857 * 170.09367 * 9 8 7 11 11 C 1.50695 * 109.47007 * 269.99959 * 10 9 8 12 12 H 1.08007 * 120.00349 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00363 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99365 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00460 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47070 * 0.02562 * 15 13 11 17 17 H 1.48492 * 109.47157 * 120.00132 * 15 13 11 18 18 H 1.48506 * 109.47054 * 240.00132 * 15 13 11 19 19 C 1.46501 * 120.00090 * 350.09160 * 9 8 7 20 20 C 1.52994 * 109.47249 * 234.42261 * 19 9 8 21 21 C 1.53006 * 109.46932 * 114.42154 * 19 9 8 22 22 N 1.31996 * 120.74729 * 359.47775 * 8 7 6 23 23 H 1.08995 * 109.47428 * 239.99752 * 1 2 3 24 24 H 1.08999 * 109.47000 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46559 * 120.00027 * 1 2 3 26 26 H 1.08004 * 120.39500 * 359.97438 * 5 4 2 27 27 H 1.07999 * 120.69942 * 180.02562 * 6 5 4 28 28 H 1.08002 * 120.33384 * 180.25837 * 7 6 5 29 29 H 1.09000 * 109.46848 * 29.99891 * 10 9 8 30 30 H 1.08994 * 109.47090 * 149.99896 * 10 9 8 31 31 H 0.97001 * 120.00184 * 180.02562 * 14 13 11 32 32 H 1.08996 * 109.46946 * 354.43017 * 19 9 8 33 33 H 1.08995 * 109.47094 * 296.43984 * 20 19 9 34 34 H 1.09003 * 109.46449 * 56.43920 * 20 19 9 35 35 H 1.08998 * 109.47261 * 176.43516 * 20 19 9 36 36 H 1.08997 * 109.47219 * 183.56844 * 21 19 9 37 37 H 1.08996 * 109.47597 * 303.57334 * 21 19 9 38 38 H 1.09007 * 109.46752 * 63.57276 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0497 0.0000 4 6 2.2446 -1.2776 -0.0006 5 6 3.6384 -1.2704 0.0000 6 6 4.3218 -2.4781 0.0000 7 6 3.5910 -3.6522 0.0051 8 6 2.1968 -3.5897 -0.0007 9 7 1.4565 -4.7657 -0.0009 10 6 0.0077 -4.7192 0.2114 11 6 -0.2879 -4.8301 1.6849 12 1 0.5224 -4.9261 2.3926 13 6 -1.5927 -4.8090 2.1299 14 7 -2.5794 -4.6926 1.2682 15 14 -1.9591 -4.9457 3.9565 16 1 -0.6847 -5.0652 4.7093 17 1 -2.6879 -3.7331 4.4073 18 1 -2.7959 -6.1472 4.2049 19 6 2.1248 -6.0520 -0.2134 20 6 1.4540 -6.7897 -1.3738 21 6 2.0194 -6.8975 1.0575 22 7 1.5735 -2.4262 -0.0007 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3632 -0.5138 -0.8900 26 1 4.1800 -0.3360 0.0004 27 1 5.4016 -2.5006 0.0008 28 1 4.0942 -4.6078 0.0094 29 1 -0.3850 -3.7758 -0.1680 30 1 -0.4637 -5.5477 -0.3171 31 1 -3.4974 -4.6774 1.5811 32 1 3.1749 -5.8810 -0.4499 33 1 0.4207 -7.0165 -1.1113 34 1 1.4731 -6.1605 -2.2637 35 1 1.9903 -7.7174 -1.5731 36 1 2.5705 -7.8280 0.9215 37 1 2.4407 -6.3451 1.8974 38 1 0.9718 -7.1217 1.2588 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690987314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:46 Heat of formation + Delta-G solvation = -10.180160 kcal Electronic energy + Delta-G solvation = -20010.228855 eV Core-core repulsion = 17045.425350 eV Total energy + Delta-G solvation = -2964.803505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.45285 -40.03448 -38.19677 -34.87779 -33.75587 -33.19881 -31.10673 -30.65492 -28.51082 -27.98883 -25.71880 -24.54548 -23.31446 -21.62776 -20.29046 -18.61501 -18.47043 -17.51704 -16.77864 -16.65123 -16.42301 -16.24839 -15.60073 -15.32672 -14.93975 -14.74161 -14.23612 -14.06195 -13.93460 -13.31910 -13.27018 -13.08739 -13.07889 -12.95003 -12.75530 -12.74249 -12.38215 -12.25799 -12.07715 -11.59072 -11.46276 -11.20561 -10.86427 -10.56425 -10.53439 -10.08670 -8.43861 -7.98468 -6.21369 -0.36468 0.65196 1.34640 1.36147 1.39393 1.48846 2.23714 2.44450 2.95617 3.07362 3.18031 3.68197 3.99321 4.07797 4.21428 4.23908 4.32792 4.39264 4.46964 4.59387 4.62508 4.72602 4.85888 4.87056 5.00693 5.06001 5.09606 5.15376 5.27480 5.31025 5.35462 5.50714 5.58201 5.70215 5.82945 6.14795 6.23914 6.44301 6.68428 6.92720 7.37069 7.48185 8.94413 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.008230 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.881771 B = 3401.181509 C = 4669.495020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.419 3.581 3 O -0.478 6.478 4 C 0.063 3.937 5 C -0.194 4.194 6 C -0.036 4.036 7 C -0.219 4.219 8 C 0.388 3.612 9 N -0.596 5.596 10 C 0.274 3.726 11 C -0.515 4.515 12 H 0.047 0.953 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.948 3.052 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.277 1.277 19 C 0.141 3.859 20 C -0.154 4.154 21 C -0.150 4.150 22 N -0.526 5.526 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.146 0.854 27 H 0.178 0.822 28 H 0.161 0.839 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.262 0.738 32 H 0.108 0.892 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.553 -0.627 -3.862 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.298 3.702 3 O -0.353 6.353 4 C -0.074 4.074 5 C -0.219 4.219 6 C -0.061 4.061 7 C -0.244 4.244 8 C 0.150 3.850 9 N -0.306 5.306 10 C 0.152 3.848 11 C -0.554 4.554 12 H 0.065 0.935 13 C -0.186 4.186 14 N -0.566 5.566 15 Si 0.774 3.226 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.203 1.203 19 C 0.038 3.962 20 C -0.212 4.212 21 C -0.208 4.208 22 N -0.247 5.247 23 H 0.104 0.896 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.164 0.836 27 H 0.195 0.805 28 H 0.178 0.822 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.635 -0.225 -3.879 12.267 hybrid contribution -0.212 -0.104 1.054 1.080 sum 11.423 -0.329 -2.825 11.772 Atomic orbital electron populations 1.22000 0.91774 1.04561 1.05142 1.22646 0.92708 0.86063 0.68762 1.90459 1.73002 1.33833 1.38050 1.21494 0.92644 0.92682 1.00531 1.22062 0.93492 1.00568 1.05736 1.21658 1.01800 0.90021 0.92649 1.22027 0.91886 1.01504 1.08982 1.18785 0.89103 0.86307 0.90806 1.47112 1.07879 1.02445 1.73167 1.18646 0.75611 0.95978 0.94534 1.21704 0.91578 1.48593 0.93544 0.93495 1.25611 0.96261 0.95490 1.01197 1.70041 0.99486 1.51839 1.35266 0.85660 0.78007 0.77644 0.81239 1.19712 1.20988 1.20296 1.21250 0.97328 0.82049 0.95525 1.22100 1.00981 1.00942 0.97146 1.22100 1.02083 0.99754 0.96907 1.67160 1.41171 0.97514 1.18854 0.89560 0.88596 0.88698 0.83598 0.80512 0.82190 0.96716 0.96853 0.92881 0.87421 0.94153 0.93107 0.88695 0.89484 0.94006 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.74 9.80 71.24 0.70 -5.05 16 2 C 0.42 14.70 7.24 28.14 0.20 14.91 16 3 O -0.48 -17.42 17.05 -2.83 -0.05 -17.46 16 4 C 0.06 2.31 6.73 41.69 0.28 2.59 16 5 C -0.19 -5.80 9.63 22.67 0.22 -5.58 16 6 C -0.04 -0.89 10.16 22.41 0.23 -0.67 16 7 C -0.22 -6.29 9.25 22.60 0.21 -6.08 16 8 C 0.39 14.94 7.34 133.30 0.98 15.92 16 9 N -0.60 -23.90 2.50 -684.19 -1.71 -25.61 16 10 C 0.27 13.75 4.85 85.63 0.42 14.16 16 11 C -0.51 -27.87 7.97 25.60 0.20 -27.67 16 12 H 0.05 2.58 7.59 -2.91 -0.02 2.56 16 13 C 0.01 0.71 5.46 84.66 0.46 1.17 16 14 N -0.93 -53.77 13.29 21.45 0.28 -53.48 16 15 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 C 0.14 4.32 3.11 44.99 0.14 4.46 16 20 C -0.15 -4.34 8.96 71.98 0.64 -3.70 16 21 C -0.15 -4.64 8.51 71.98 0.61 -4.03 16 22 N -0.53 -21.92 8.49 -182.64 -1.55 -23.47 16 23 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 24 H 0.10 2.61 8.12 -2.39 -0.02 2.59 16 25 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 26 H 0.15 3.88 7.63 -2.91 -0.02 3.86 16 27 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 28 H 0.16 3.56 5.93 -2.91 -0.02 3.54 16 29 H 0.01 0.83 7.25 -2.39 -0.02 0.82 16 30 H 0.01 0.72 6.23 -2.39 -0.01 0.70 16 31 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.11 2.56 5.47 -2.39 -0.01 2.55 16 33 H 0.04 1.37 6.68 -2.39 -0.02 1.35 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.04 1.62 7.18 -2.38 -0.02 1.60 16 Total: -1.00 -66.03 318.48 5.35 -60.68 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.05 Total: 12.83 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.30 Total: 0.44 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -2.98 Total: -102.57 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.05 Total: -17.46 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -66.03 5.35 -60.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690987314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.502 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds