Wall clock time and date at job start Mon Mar 30 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21292 * 119.99858 * 2 1 4 4 N 1.34775 * 119.99914 * 179.97438 * 2 1 3 5 5 C 1.40148 * 120.00190 * 185.27378 * 4 2 1 6 6 C 1.38857 * 119.99589 * 33.30647 * 5 4 2 7 7 C 1.38060 * 120.00660 * 180.02562 * 6 5 4 8 8 C 1.38886 * 119.99486 * 359.97438 * 7 6 5 9 9 N 1.39893 * 120.00629 * 179.97438 * 8 7 6 10 10 C 1.46497 * 120.00464 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.46741 * 35.00062 * 10 9 8 12 12 C 1.52992 * 109.47464 * 275.00527 * 10 9 8 13 13 C 1.52998 * 109.46992 * 154.99970 * 10 9 8 14 14 C 1.50701 * 109.47019 * 295.00196 * 13 10 9 15 15 H 1.07990 * 120.00557 * 0.02562 * 14 13 10 16 16 C 1.37882 * 119.99287 * 180.02562 * 14 13 10 17 17 N 1.31507 * 120.00644 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99523 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46918 * 60.00149 * 18 16 14 20 20 H 1.48502 * 109.47042 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47202 * 300.00030 * 18 16 14 22 22 C 1.38892 * 119.99048 * 0.24814 * 8 7 6 23 23 C 1.38058 * 119.99578 * 359.54109 * 22 8 7 24 24 H 1.08999 * 109.46976 * 239.99660 * 1 2 3 25 25 H 1.08998 * 109.47244 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47318 * 119.99817 * 1 2 3 27 27 H 0.97002 * 120.00380 * 5.28104 * 4 2 1 28 28 H 1.08000 * 119.99510 * 0.02562 * 6 5 4 29 29 H 1.08003 * 120.00139 * 179.97438 * 7 6 5 30 30 H 0.97007 * 119.99457 * 0.02562 * 9 8 7 31 31 H 1.09008 * 109.47195 * 299.99831 * 12 10 9 32 32 H 1.09002 * 109.47348 * 180.02562 * 12 10 9 33 33 H 1.08998 * 109.47348 * 59.99554 * 12 10 9 34 34 H 1.09000 * 109.47355 * 55.00238 * 13 10 9 35 35 H 1.09007 * 109.47026 * 175.00611 * 13 10 9 36 36 H 0.97001 * 120.00218 * 180.02562 * 17 16 14 37 37 H 1.08004 * 120.00060 * 179.72784 * 22 8 7 38 38 H 1.08003 * 119.99552 * 180.19212 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5779 -1.1698 0.1121 6 6 4.2155 -0.1971 0.8707 7 6 5.5918 -0.1991 0.9803 8 6 6.3385 -1.1745 0.3322 9 7 7.7330 -1.1764 0.4426 10 6 8.5206 -2.2056 -0.2406 11 1 8.0463 -2.4556 -1.1897 12 6 8.5959 -3.4566 0.6370 13 6 9.9333 -1.6785 -0.4996 14 6 9.8689 -0.5210 -1.4625 15 1 8.9158 -0.1937 -1.8505 16 6 11.0271 0.1202 -1.8479 17 7 12.1879 -0.2785 -1.3758 18 14 10.9472 1.5555 -3.0409 19 1 10.1148 2.6381 -2.4577 20 1 12.3186 2.0663 -3.2934 21 1 10.3449 1.1027 -4.3205 22 6 5.7008 -2.1446 -0.4303 23 6 4.3243 -2.1448 -0.5362 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 1.6990 -2.0055 -0.0764 28 1 3.6348 0.5611 1.3750 29 1 6.0877 0.5577 1.5700 30 1 8.1785 -0.4967 0.9723 31 1 9.0701 -3.2066 1.5861 32 1 9.1822 -4.2221 0.1288 33 1 7.5894 -3.8321 0.8215 34 1 10.3749 -1.3455 0.4397 35 1 10.5449 -2.4731 -0.9271 36 1 13.0027 0.1728 -1.6468 37 1 6.2816 -2.9005 -0.9380 38 1 3.8283 -2.9010 -1.1266 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695777800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:32 Heat of formation + Delta-G solvation = -20.769561 kcal Electronic energy + Delta-G solvation = -19022.331598 eV Core-core repulsion = 16057.068902 eV Total energy + Delta-G solvation = -2965.262696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27349 -38.62989 -36.31771 -34.37322 -32.69421 -31.19759 -30.54475 -29.74368 -27.43463 -26.67372 -23.32209 -22.84281 -21.75502 -20.57971 -19.43588 -17.65167 -16.94961 -16.66166 -16.29307 -15.54622 -15.04235 -14.52527 -14.21069 -13.84688 -13.54684 -13.23136 -13.02401 -12.88857 -12.75626 -12.43715 -12.35633 -12.10816 -11.81586 -11.50517 -11.22844 -10.87960 -10.80421 -10.65038 -10.48264 -10.13952 -9.77701 -9.40616 -9.23203 -8.79926 -8.55712 -8.41349 -6.58955 -6.04453 -4.06656 1.76550 1.85036 2.67192 3.16708 3.33470 3.37319 3.41759 4.16736 4.28301 4.44443 4.63140 4.99081 5.09538 5.20037 5.32454 5.34982 5.53792 5.73344 5.77464 5.85671 5.88077 5.99977 6.03989 6.28104 6.40252 6.48161 6.60297 6.65128 6.79592 6.81407 6.85779 7.26487 7.47532 7.50880 7.56349 7.92970 8.08307 8.17212 8.34626 8.46972 8.99762 9.58351 11.06416 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.004350 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.343399 B = 6434.551484 C = 7240.497789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.502 3.498 3 O -0.532 6.532 4 N -0.667 5.667 5 C 0.053 3.947 6 C -0.065 4.065 7 C -0.192 4.192 8 C 0.229 3.771 9 N -0.716 5.716 10 C 0.146 3.854 11 H 0.067 0.933 12 C -0.164 4.164 13 C 0.016 3.984 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.189 4.189 23 C -0.090 4.090 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.404 0.596 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.400 0.600 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.021 0.979 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.126 0.874 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.969 -5.552 4.548 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.290 3.710 3 O -0.408 6.408 4 N -0.313 5.313 5 C -0.041 4.041 6 C -0.085 4.085 7 C -0.216 4.216 8 C 0.121 3.879 9 N -0.340 5.340 10 C 0.042 3.958 11 H 0.085 0.915 12 C -0.223 4.223 13 C -0.021 4.021 14 C -0.555 4.555 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.213 4.213 23 C -0.111 4.111 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.239 0.761 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.235 0.765 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.238 -4.896 4.442 20.342 hybrid contribution 0.023 0.643 -0.606 0.884 sum -19.215 -4.253 3.836 20.051 Atomic orbital electron populations 1.21909 0.91484 1.05607 1.04183 1.20895 0.90585 0.83536 0.76002 1.90754 1.70546 1.31293 1.48159 1.43420 1.05691 1.09063 1.73099 1.17348 0.81933 1.00928 1.03915 1.20706 0.93860 0.97503 0.96469 1.20462 0.93321 1.01242 1.06583 1.18012 0.84716 0.92764 0.92415 1.45051 1.01577 1.32886 1.54534 1.21202 0.94965 0.86264 0.93405 0.91491 1.22292 1.00567 0.98667 1.00742 1.19383 0.88806 0.96593 0.97338 1.21155 0.92938 1.15055 1.26395 0.92474 1.24998 0.95509 0.97370 0.96426 1.69941 0.97761 1.41430 1.44412 0.86668 0.76916 0.82854 0.81661 1.20224 1.21341 1.20255 1.20475 0.93616 1.02136 1.05074 1.20517 0.93438 0.98689 0.98473 0.89358 0.88902 0.89442 0.76122 0.85720 0.86222 0.76487 0.92974 0.92332 0.93650 0.96119 0.95163 0.92914 0.85667 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.32 36.01 0.37 -0.73 16 2 C 0.50 5.88 7.68 -10.99 -0.08 5.80 16 3 O -0.53 -8.90 14.77 5.55 0.08 -8.81 16 4 N -0.67 -7.23 5.35 -9.82 -0.05 -7.28 16 5 C 0.05 0.76 6.28 -83.60 -0.53 0.24 16 6 C -0.06 -1.04 8.65 -39.42 -0.34 -1.39 16 7 C -0.19 -3.22 9.89 -39.41 -0.39 -3.61 16 8 C 0.23 4.01 6.64 -83.70 -0.56 3.45 16 9 N -0.72 -13.37 4.97 -52.12 -0.26 -13.63 16 10 C 0.15 2.86 2.22 -67.94 -0.15 2.71 16 11 H 0.07 1.34 6.47 -51.93 -0.34 1.00 16 12 C -0.16 -2.70 9.44 37.15 0.35 -2.35 16 13 C 0.02 0.39 4.52 -27.88 -0.13 0.27 16 14 C -0.52 -14.16 8.84 -34.44 -0.30 -14.47 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.19 -3.05 8.86 -39.41 -0.35 -3.40 16 23 C -0.09 -1.26 9.95 -39.42 -0.39 -1.66 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.40 2.78 8.82 -40.82 -0.36 2.42 16 28 H 0.12 2.04 6.41 -52.49 -0.34 1.70 16 29 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.40 7.54 8.62 -40.82 -0.35 7.19 16 31 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 1.95 6.14 -52.48 -0.32 1.63 16 38 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -32.63 321.33 -7.72 -40.35 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.45 Total: 6.91 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.59 Total: -13.58 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.42 Total: -46.57 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.63 -7.72 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695777800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.580 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds