Wall clock time and date at job start Mon Mar 30 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21292 * 119.99858 * 2 1 4 4 N 1.34775 * 119.99914 * 179.97438 * 2 1 3 5 5 C 1.40148 * 120.00190 * 185.27378 * 4 2 1 6 6 C 1.38857 * 119.99589 * 33.30647 * 5 4 2 7 7 C 1.38060 * 120.00660 * 180.02562 * 6 5 4 8 8 C 1.38886 * 119.99486 * 359.97438 * 7 6 5 9 9 N 1.39893 * 120.00629 * 179.97438 * 8 7 6 10 10 C 1.46497 * 120.00464 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.46741 * 35.00062 * 10 9 8 12 12 C 1.52992 * 109.47464 * 275.00527 * 10 9 8 13 13 C 1.52998 * 109.46992 * 154.99970 * 10 9 8 14 14 C 1.50701 * 109.47019 * 295.00196 * 13 10 9 15 15 H 1.07990 * 120.00557 * 0.02562 * 14 13 10 16 16 C 1.37882 * 119.99287 * 180.02562 * 14 13 10 17 17 N 1.31507 * 120.00644 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99523 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46918 * 60.00149 * 18 16 14 20 20 H 1.48502 * 109.47042 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47202 * 300.00030 * 18 16 14 22 22 C 1.38892 * 119.99048 * 0.24814 * 8 7 6 23 23 C 1.38058 * 119.99578 * 359.54109 * 22 8 7 24 24 H 1.08999 * 109.46976 * 239.99660 * 1 2 3 25 25 H 1.08998 * 109.47244 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47318 * 119.99817 * 1 2 3 27 27 H 0.97002 * 120.00380 * 5.28104 * 4 2 1 28 28 H 1.08000 * 119.99510 * 0.02562 * 6 5 4 29 29 H 1.08003 * 120.00139 * 179.97438 * 7 6 5 30 30 H 0.97007 * 119.99457 * 0.02562 * 9 8 7 31 31 H 1.09008 * 109.47195 * 299.99831 * 12 10 9 32 32 H 1.09002 * 109.47348 * 180.02562 * 12 10 9 33 33 H 1.08998 * 109.47348 * 59.99554 * 12 10 9 34 34 H 1.09000 * 109.47355 * 55.00238 * 13 10 9 35 35 H 1.09007 * 109.47026 * 175.00611 * 13 10 9 36 36 H 0.97001 * 120.00218 * 180.02562 * 17 16 14 37 37 H 1.08004 * 120.00060 * 179.72784 * 22 8 7 38 38 H 1.08003 * 119.99552 * 180.19212 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5779 -1.1698 0.1121 6 6 4.2155 -0.1971 0.8707 7 6 5.5918 -0.1991 0.9803 8 6 6.3385 -1.1745 0.3322 9 7 7.7330 -1.1764 0.4426 10 6 8.5206 -2.2056 -0.2406 11 1 8.0463 -2.4556 -1.1897 12 6 8.5959 -3.4566 0.6370 13 6 9.9333 -1.6785 -0.4996 14 6 9.8689 -0.5210 -1.4625 15 1 8.9158 -0.1937 -1.8505 16 6 11.0271 0.1202 -1.8479 17 7 12.1879 -0.2785 -1.3758 18 14 10.9472 1.5555 -3.0409 19 1 10.1148 2.6381 -2.4577 20 1 12.3186 2.0663 -3.2934 21 1 10.3449 1.1027 -4.3205 22 6 5.7008 -2.1446 -0.4303 23 6 4.3243 -2.1448 -0.5362 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 1.6990 -2.0055 -0.0764 28 1 3.6348 0.5611 1.3750 29 1 6.0877 0.5577 1.5700 30 1 8.1785 -0.4967 0.9723 31 1 9.0701 -3.2066 1.5861 32 1 9.1822 -4.2221 0.1288 33 1 7.5894 -3.8321 0.8215 34 1 10.3749 -1.3455 0.4397 35 1 10.5449 -2.4731 -0.9271 36 1 13.0027 0.1728 -1.6468 37 1 6.2816 -2.9005 -0.9380 38 1 3.8283 -2.9010 -1.1266 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695777800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:32 Heat of formation + Delta-G solvation = -42.230980 kcal Electronic energy + Delta-G solvation = -19023.262235 eV Core-core repulsion = 16057.068902 eV Total energy + Delta-G solvation = -2966.193333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.32931 -39.85574 -37.72270 -35.65875 -34.59018 -32.53163 -31.74298 -30.67152 -29.26149 -27.85943 -25.14308 -24.18519 -22.94110 -21.81392 -20.79323 -18.73863 -18.51022 -18.07311 -17.72213 -16.82293 -16.40952 -16.19392 -15.38392 -15.04725 -14.81173 -14.66937 -14.27936 -14.18842 -13.84926 -13.71199 -13.52498 -13.28947 -13.21678 -13.03887 -12.82734 -12.61941 -12.45318 -12.21933 -12.06749 -11.54686 -11.25692 -11.16055 -10.85369 -10.58702 -10.04858 -9.79108 -8.21596 -7.89643 -6.29380 0.56268 0.63672 1.37144 1.38109 1.46309 1.72843 2.30058 2.38509 2.74226 3.05541 3.13849 3.89021 4.05300 4.13897 4.26001 4.50812 4.52509 4.53525 4.60517 4.67145 4.71748 4.75278 4.93348 5.09749 5.11473 5.17895 5.21373 5.29466 5.42763 5.47841 5.56163 5.61082 5.65424 5.80457 6.11290 6.23204 6.61392 6.67596 6.84988 7.00333 7.30718 7.39220 8.89554 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.004350 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.343399 B = 6434.551484 C = 7240.497789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.495 3.505 3 O -0.589 6.589 4 N -0.655 5.655 5 C 0.058 3.942 6 C -0.080 4.080 7 C -0.203 4.203 8 C 0.207 3.793 9 N -0.726 5.726 10 C 0.159 3.841 11 H 0.064 0.936 12 C -0.153 4.153 13 C 0.022 3.978 14 C -0.525 4.525 15 H 0.051 0.949 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.952 3.048 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.271 1.271 22 C -0.196 4.196 23 C -0.083 4.083 24 H 0.116 0.884 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.427 0.573 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.395 0.605 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.000 1.000 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.130 0.870 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.732 -6.555 3.825 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.286 3.714 3 O -0.469 6.469 4 N -0.302 5.302 5 C -0.037 4.037 6 C -0.100 4.100 7 C -0.226 4.226 8 C 0.101 3.899 9 N -0.352 5.352 10 C 0.054 3.946 11 H 0.082 0.918 12 C -0.212 4.212 13 C -0.015 4.015 14 C -0.564 4.564 15 H 0.069 0.931 16 C -0.192 4.192 17 N -0.570 5.570 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.196 1.196 22 C -0.219 4.219 23 C -0.104 4.104 24 H 0.135 0.865 25 H 0.107 0.893 26 H 0.134 0.866 27 H 0.265 0.735 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.228 0.772 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.018 0.982 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.148 0.852 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -22.068 -5.947 3.716 23.155 hybrid contribution 0.767 0.947 -0.369 1.273 sum -21.300 -5.000 3.347 22.134 Atomic orbital electron populations 1.21923 0.86868 1.06281 1.06848 1.21937 0.92704 0.82596 0.74173 1.90738 1.72089 1.33345 1.50758 1.43406 1.04270 1.10280 1.72263 1.17521 0.83863 0.99899 1.02423 1.20767 0.93622 0.98241 0.97413 1.20538 0.93811 1.01354 1.06900 1.18165 0.84046 0.93899 0.93782 1.44917 1.02159 1.33003 1.55101 1.20903 0.91981 0.87417 0.94277 0.91833 1.22173 1.01888 0.97235 0.99900 1.19246 0.91645 0.95209 0.95425 1.21466 0.92580 1.15763 1.26551 0.93065 1.25781 0.95295 0.99930 0.98158 1.70048 0.98339 1.42793 1.45809 0.85697 0.77080 0.79747 0.79676 1.20099 1.20696 1.19572 1.20686 0.94741 1.01799 1.04698 1.20838 0.92624 0.99006 0.97887 0.86540 0.89330 0.86590 0.73458 0.86479 0.86337 0.77157 0.93261 0.91546 0.91677 0.98214 0.97114 0.92828 0.85185 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 10.32 71.24 0.74 -0.74 16 2 C 0.50 10.56 7.68 87.66 0.67 11.23 16 3 O -0.59 -19.51 14.77 -3.07 -0.05 -19.56 16 4 N -0.66 -12.28 5.35 -303.35 -1.62 -13.90 16 5 C 0.06 1.56 6.28 38.11 0.24 1.80 16 6 C -0.08 -2.56 8.65 22.38 0.19 -2.36 16 7 C -0.20 -6.89 9.89 22.38 0.22 -6.67 16 8 C 0.21 7.23 6.64 38.17 0.25 7.48 16 9 N -0.73 -27.53 4.97 -318.82 -1.58 -29.11 16 10 C 0.16 6.26 2.22 44.99 0.10 6.36 16 11 H 0.06 2.53 6.47 -2.38 -0.02 2.51 16 12 C -0.15 -4.93 9.44 71.98 0.68 -4.25 16 13 C 0.02 1.11 4.52 29.85 0.13 1.24 16 14 C -0.53 -29.29 8.84 25.60 0.23 -29.06 16 15 H 0.05 2.87 7.74 -2.92 -0.02 2.84 16 16 C 0.01 0.36 5.46 84.66 0.46 0.83 16 17 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 18 Si 0.95 45.27 29.54 68.60 2.03 47.29 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C -0.20 -5.99 8.86 22.38 0.20 -5.79 16 23 C -0.08 -2.09 9.95 22.37 0.22 -1.87 16 24 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.09 0.96 8.12 -2.39 -0.02 0.94 16 26 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.43 4.09 8.82 -92.71 -0.82 3.27 16 28 H 0.12 3.91 6.41 -2.91 -0.02 3.89 16 29 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.39 15.45 8.62 -92.70 -0.80 14.65 16 31 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 1.84 7.75 -2.39 -0.02 1.82 16 34 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.13 3.81 6.14 -2.91 -0.02 3.80 16 38 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -72.33 321.33 2.86 -69.47 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.54 Total: 23.04 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 4.34 Total: -21.80 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -2.92 Total: -98.45 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -72.33 2.86 -69.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695777800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.243 kcal (2) G-P(sol) polarization free energy of solvation -72.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds