Wall clock time and date at job start Mon Mar 30 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.53006 * 109.47445 * 119.99774 * 2 1 3 5 5 C 1.50696 * 109.46909 * 295.00499 * 4 2 1 6 6 H 1.08009 * 120.00414 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99889 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00381 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47222 * 89.99909 * 9 7 5 11 11 H 1.48499 * 109.47369 * 210.00040 * 9 7 5 12 12 H 1.48505 * 109.47178 * 329.99960 * 9 7 5 13 13 C 1.53002 * 109.47415 * 239.99648 * 2 1 3 14 14 H 1.09002 * 109.47070 * 300.00053 * 13 2 1 15 15 C 1.52997 * 109.46817 * 59.99873 * 13 2 1 16 16 C 1.50705 * 109.47390 * 184.99865 * 15 13 2 17 17 C 1.38234 * 119.99942 * 269.73386 * 16 15 13 18 18 C 1.38236 * 119.99514 * 179.76095 * 17 16 15 19 19 C 1.38235 * 120.00086 * 0.50483 * 18 17 16 20 20 C 1.38233 * 120.00078 * 359.74757 * 19 18 17 21 21 C 1.38232 * 119.99899 * 0.02562 * 20 19 18 22 22 C 1.50701 * 109.47419 * 179.97438 * 13 2 1 23 23 O 1.20828 * 119.99823 * 359.97438 * 22 13 2 24 24 O 1.34224 * 120.00059 * 180.02562 * 22 13 2 25 25 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47171 * 299.99624 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00376 * 1 2 3 28 28 H 1.09004 * 109.46759 * 54.99660 * 4 2 1 29 29 H 1.08993 * 109.47534 * 175.00076 * 4 2 1 30 30 H 0.96996 * 120.00525 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47630 * 305.00128 * 15 13 2 32 32 H 1.09004 * 109.47346 * 65.00258 * 15 13 2 33 33 H 1.07996 * 120.00148 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.00154 * 180.22273 * 18 17 16 35 35 H 1.08002 * 120.00186 * 179.72280 * 19 18 17 36 36 H 1.08003 * 120.00247 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99706 * 179.97438 * 21 20 19 38 38 H 0.96701 * 117.00226 * 179.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6748 -1.5196 3.8513 9 14 1.4987 0.5630 5.2496 10 1 0.1710 0.0956 5.7231 11 1 2.5077 0.3523 6.3186 12 1 1.4248 2.0083 4.9165 13 6 2.0401 -0.7213 -1.2492 14 1 1.6767 -1.7490 -1.2491 15 6 1.5300 -0.0001 -2.4984 16 6 1.9288 -0.7784 -3.7258 17 6 3.1320 -0.5125 -4.3522 18 6 3.4999 -1.2298 -5.4751 19 6 2.6599 -2.2058 -5.9778 20 6 1.4543 -2.4681 -5.3545 21 6 1.0885 -1.7540 -4.2288 22 6 3.5471 -0.7208 -1.2495 23 8 4.1512 -0.1967 -0.3438 24 8 4.2182 -1.3015 -2.2565 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 2.9221 -1.8425 4.7319 31 1 0.4437 0.0781 -2.4549 32 1 1.9646 0.9984 -2.5444 33 1 3.7862 0.2532 -3.9622 34 1 4.4416 -1.0246 -5.9625 35 1 2.9453 -2.7632 -6.8578 36 1 0.7977 -3.2303 -5.7474 37 1 0.1463 -1.9587 -3.7420 38 1 5.1839 -1.2755 -2.2131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:41 Heat of formation + Delta-G solvation = -84.886841 kcal Electronic energy + Delta-G solvation = -19846.350452 eV Core-core repulsion = 16846.014670 eV Total energy + Delta-G solvation = -3000.335781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27070 -38.88225 -36.44168 -35.31744 -33.18412 -31.73939 -30.78614 -28.81795 -26.85132 -25.20314 -23.13671 -22.50254 -21.76665 -20.42201 -18.90777 -17.46114 -16.74457 -16.49245 -16.03372 -15.38655 -14.99332 -14.75181 -14.42802 -13.59219 -13.50889 -13.32241 -13.06355 -12.75728 -12.39693 -12.14090 -11.76768 -11.48496 -11.35884 -11.09601 -11.04332 -10.88255 -10.82861 -10.74232 -10.34962 -10.29858 -10.03197 -9.51491 -9.14970 -8.85864 -8.75456 -8.46491 -8.19067 -5.88777 -3.88519 1.45457 1.52855 2.79985 3.37309 3.43573 3.46962 3.54473 3.90304 4.53652 4.82117 4.92009 5.05829 5.17296 5.30350 5.33932 5.44516 5.48120 5.60126 5.65395 5.84142 5.92703 6.01926 6.11943 6.18674 6.21599 6.31911 6.42704 6.55153 6.58943 6.76509 6.89512 6.96694 7.05111 7.11543 7.18424 7.79554 8.00659 8.15025 8.46274 8.56160 9.18127 9.72820 11.23101 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037548 B = 0.004694 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.523910 B = 5964.030104 C = 6310.281928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 H 0.066 0.934 4 C 0.014 3.986 5 C -0.507 4.507 6 H 0.054 0.946 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C -0.065 4.065 14 H 0.101 0.899 15 C -0.077 4.077 16 C -0.077 4.077 17 C -0.079 4.079 18 C -0.125 4.125 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.114 4.114 22 C 0.471 3.529 23 O -0.486 6.486 24 O -0.515 6.515 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.009 0.991 29 H 0.045 0.955 30 H 0.258 0.742 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 -0.238 -19.260 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 H 0.084 0.916 4 C -0.023 4.023 5 C -0.546 4.546 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.085 4.085 14 H 0.119 0.881 15 C -0.115 4.115 16 C -0.077 4.077 17 C -0.098 4.098 18 C -0.143 4.143 19 C -0.145 4.145 20 C -0.145 4.145 21 C -0.132 4.132 22 C 0.312 3.688 23 O -0.371 6.371 24 O -0.327 6.327 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.282 -0.203 -18.874 18.919 hybrid contribution 0.521 0.298 1.040 1.201 sum -0.761 0.095 -17.834 17.851 Atomic orbital electron populations 1.21804 0.95466 1.01186 1.00751 1.21189 0.95043 0.99706 0.93268 0.91588 1.19430 0.98439 0.94599 0.89805 1.21186 1.34295 1.08081 0.91028 0.92780 1.24988 0.95432 0.95127 0.98972 1.69968 1.39205 1.21343 1.23152 0.86663 0.78088 0.80481 0.83155 1.20836 1.21369 1.19954 1.21318 0.86732 1.03062 0.97345 0.88084 1.20739 1.02524 0.98100 0.90104 1.19861 0.94801 0.96886 0.96189 1.20878 0.95292 0.99206 0.94376 1.21031 0.99423 0.96890 0.96967 1.21048 0.94932 0.98451 1.00094 1.21045 0.96985 0.99948 0.96477 1.21029 0.99678 0.96068 0.96451 1.23622 0.91885 0.74793 0.78473 1.90773 1.70232 1.41518 1.34616 1.84784 1.25466 1.74206 1.48239 0.93376 0.91361 0.94463 0.97309 0.93703 0.93239 0.89046 0.90759 0.86704 0.86663 0.86765 0.86563 0.86220 0.74833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.66 37.16 0.32 -2.05 16 2 C -0.07 -1.48 1.56 -90.62 -0.14 -1.62 16 3 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 4 C 0.01 0.37 4.18 -27.88 -0.12 0.25 16 5 C -0.51 -14.56 8.41 -34.44 -0.29 -14.85 16 6 H 0.05 1.50 7.06 -52.48 -0.37 1.13 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.07 -1.09 1.91 -91.77 -0.18 -1.27 16 14 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 15 C -0.08 -1.02 4.61 -27.88 -0.13 -1.15 16 16 C -0.08 -0.97 4.54 -104.62 -0.47 -1.45 16 17 C -0.08 -0.94 6.89 -39.58 -0.27 -1.22 16 18 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 19 C -0.13 -1.33 10.05 -39.58 -0.40 -1.72 16 20 C -0.13 -1.37 10.05 -39.59 -0.40 -1.76 16 21 C -0.11 -1.35 9.70 -39.58 -0.38 -1.73 16 22 C 0.47 8.36 7.21 36.01 0.26 8.62 16 23 O -0.49 -10.80 14.43 -18.75 -0.27 -11.07 16 24 O -0.52 -7.12 9.32 -39.24 -0.37 -7.49 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.31 6.95 -51.93 -0.36 0.95 16 27 H 0.04 0.52 6.32 -51.93 -0.33 0.19 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 1.31 5.42 -51.93 -0.28 1.03 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.09 1.09 6.12 -51.93 -0.32 0.77 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.11 1.31 7.60 -52.49 -0.40 0.91 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.39 4.00 9.10 45.56 0.41 4.42 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -33.92 310.90 -7.51 -41.42 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.58 Total: 2.52 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.69 Total: -20.17 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.74 Total: -27.10 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.64 Total: -18.55 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.92 -7.51 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.462 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds