Wall clock time and date at job start Mon Mar 30 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.53006 * 109.47445 * 119.99774 * 2 1 3 5 5 C 1.50696 * 109.46909 * 295.00499 * 4 2 1 6 6 H 1.08009 * 120.00414 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99889 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00381 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47222 * 89.99909 * 9 7 5 11 11 H 1.48499 * 109.47369 * 210.00040 * 9 7 5 12 12 H 1.48505 * 109.47178 * 329.99960 * 9 7 5 13 13 C 1.53002 * 109.47415 * 239.99648 * 2 1 3 14 14 H 1.09002 * 109.47070 * 300.00053 * 13 2 1 15 15 C 1.52997 * 109.46817 * 59.99873 * 13 2 1 16 16 C 1.50705 * 109.47390 * 184.99865 * 15 13 2 17 17 C 1.38234 * 119.99942 * 269.73386 * 16 15 13 18 18 C 1.38236 * 119.99514 * 179.76095 * 17 16 15 19 19 C 1.38235 * 120.00086 * 0.50483 * 18 17 16 20 20 C 1.38233 * 120.00078 * 359.74757 * 19 18 17 21 21 C 1.38232 * 119.99899 * 0.02562 * 20 19 18 22 22 C 1.50701 * 109.47419 * 179.97438 * 13 2 1 23 23 O 1.20828 * 119.99823 * 359.97438 * 22 13 2 24 24 O 1.34224 * 120.00059 * 180.02562 * 22 13 2 25 25 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47171 * 299.99624 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00376 * 1 2 3 28 28 H 1.09004 * 109.46759 * 54.99660 * 4 2 1 29 29 H 1.08993 * 109.47534 * 175.00076 * 4 2 1 30 30 H 0.96996 * 120.00525 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47630 * 305.00128 * 15 13 2 32 32 H 1.09004 * 109.47346 * 65.00258 * 15 13 2 33 33 H 1.07996 * 120.00148 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.00154 * 180.22273 * 18 17 16 35 35 H 1.08002 * 120.00186 * 179.72280 * 19 18 17 36 36 H 1.08003 * 120.00247 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99706 * 179.97438 * 21 20 19 38 38 H 0.96701 * 117.00226 * 179.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6748 -1.5196 3.8513 9 14 1.4987 0.5630 5.2496 10 1 0.1710 0.0956 5.7231 11 1 2.5077 0.3523 6.3186 12 1 1.4248 2.0083 4.9165 13 6 2.0401 -0.7213 -1.2492 14 1 1.6767 -1.7490 -1.2491 15 6 1.5300 -0.0001 -2.4984 16 6 1.9288 -0.7784 -3.7258 17 6 3.1320 -0.5125 -4.3522 18 6 3.4999 -1.2298 -5.4751 19 6 2.6599 -2.2058 -5.9778 20 6 1.4543 -2.4681 -5.3545 21 6 1.0885 -1.7540 -4.2288 22 6 3.5471 -0.7208 -1.2495 23 8 4.1512 -0.1967 -0.3438 24 8 4.2182 -1.3015 -2.2565 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 2.9221 -1.8425 4.7319 31 1 0.4437 0.0781 -2.4549 32 1 1.9646 0.9984 -2.5444 33 1 3.7862 0.2532 -3.9622 34 1 4.4416 -1.0246 -5.9625 35 1 2.9453 -2.7632 -6.8578 36 1 0.7977 -3.2303 -5.7474 37 1 0.1463 -1.9587 -3.7420 38 1 5.1839 -1.2755 -2.2131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:40 Heat of formation + Delta-G solvation = -105.264695 kcal Electronic energy + Delta-G solvation = -19847.234102 eV Core-core repulsion = 16846.014670 eV Total energy + Delta-G solvation = -3001.219431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61554 -39.83533 -37.88149 -36.73074 -34.99116 -33.29225 -31.60540 -30.18765 -28.62066 -26.56503 -24.90098 -23.35336 -23.04755 -21.62904 -20.45337 -18.84406 -18.47902 -17.74082 -17.45213 -16.76138 -16.41064 -15.96363 -15.73127 -15.09128 -14.84437 -14.42386 -14.12154 -14.05584 -13.88288 -13.51359 -13.33329 -12.95112 -12.76303 -12.74194 -12.53821 -12.40560 -12.21293 -12.15030 -11.80359 -11.69100 -11.61533 -11.28373 -10.92435 -10.83825 -10.39994 -9.59911 -9.40683 -8.13909 -6.21470 0.59759 0.69053 1.38304 1.38449 1.41087 1.51159 2.28286 2.43300 3.03591 3.19873 3.70063 4.00442 4.07956 4.21126 4.24399 4.31333 4.42890 4.48403 4.59921 4.75038 4.78403 4.79576 4.92150 4.99670 5.05682 5.23261 5.28537 5.33387 5.43214 5.52860 5.59227 5.72095 5.73139 5.77775 5.87603 5.90328 6.03862 6.29358 6.33232 6.94842 7.17956 7.44809 8.98649 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037548 B = 0.004694 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.523910 B = 5964.030104 C = 6310.281928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 H 0.053 0.947 4 C 0.018 3.982 5 C -0.523 4.523 6 H 0.060 0.940 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.264 1.264 13 C -0.060 4.060 14 H 0.103 0.897 15 C -0.066 4.066 16 C -0.093 4.093 17 C -0.092 4.092 18 C -0.131 4.131 19 C -0.130 4.130 20 C -0.134 4.134 21 C -0.125 4.125 22 C 0.477 3.523 23 O -0.540 6.540 24 O -0.498 6.498 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.080 0.920 28 H -0.018 1.018 29 H 0.011 0.989 30 H 0.259 0.741 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 0.123 -20.964 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.019 4.019 5 C -0.561 4.561 6 H 0.078 0.922 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.188 1.188 13 C -0.079 4.079 14 H 0.121 0.879 15 C -0.103 4.103 16 C -0.093 4.093 17 C -0.110 4.110 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.143 4.143 22 C 0.321 3.679 23 O -0.430 6.430 24 O -0.310 6.310 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.001 0.999 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.374 0.153 -20.621 20.758 hybrid contribution 0.930 0.114 1.450 1.726 sum -1.445 0.268 -19.171 19.227 Atomic orbital electron populations 1.21741 0.93183 1.01769 1.01885 1.20965 0.96899 0.98375 0.92215 0.92870 1.19291 0.96301 0.93790 0.92487 1.21654 1.33890 1.08364 0.92214 0.92167 1.25954 0.95429 0.96177 1.02684 1.70120 1.40672 1.23235 1.23968 0.85525 0.78044 0.79279 0.78669 1.19481 1.21239 1.18843 1.21213 0.86155 1.03111 0.97469 0.87897 1.20647 1.03389 0.97713 0.88527 1.19835 0.95542 0.97679 0.96274 1.20999 0.95292 0.99642 0.95072 1.21307 1.00316 0.96639 0.96595 1.21403 0.94622 0.98173 1.00610 1.21364 0.97506 1.00144 0.96135 1.21256 1.00125 0.95951 0.96955 1.23846 0.92480 0.73645 0.77943 1.90762 1.71306 1.44142 1.36744 1.84742 1.27039 1.72886 1.46334 0.93061 0.93349 0.90166 0.99934 0.97075 0.93208 0.87267 0.90575 0.86781 0.84782 0.84505 0.84572 0.85153 0.72767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 8.66 71.98 0.62 -3.76 16 2 C -0.07 -2.68 1.56 -10.79 -0.02 -2.70 16 3 H 0.05 2.28 8.10 -2.39 -0.02 2.26 16 4 C 0.02 0.99 4.18 29.85 0.12 1.12 16 5 C -0.52 -30.73 8.41 25.60 0.22 -30.52 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 8 N -0.94 -60.03 13.29 21.45 0.28 -59.75 16 9 Si 0.96 46.13 29.54 68.60 2.03 48.15 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 12 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 13 C -0.06 -1.99 1.91 -11.54 -0.02 -2.01 16 14 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 15 C -0.07 -1.61 4.61 29.85 0.14 -1.48 16 16 C -0.09 -2.16 4.54 -19.86 -0.09 -2.25 16 17 C -0.09 -2.02 6.89 22.27 0.15 -1.86 16 18 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 19 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 20 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 21 C -0.12 -2.64 9.70 22.27 0.22 -2.43 16 22 C 0.48 17.13 7.21 71.24 0.51 17.65 16 23 O -0.54 -24.97 14.43 21.96 0.32 -24.65 16 24 O -0.50 -13.37 9.32 -51.36 -0.48 -13.85 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.82 6.95 -2.39 -0.02 1.81 16 27 H 0.08 2.03 6.32 -2.39 -0.02 2.02 16 28 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 29 H 0.01 0.68 5.42 -2.39 -0.01 0.67 16 30 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.11 2.26 6.12 -2.39 -0.01 2.25 16 32 H 0.08 1.84 8.08 -2.39 -0.02 1.82 16 33 H 0.11 2.44 7.60 -2.91 -0.02 2.42 16 34 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.41 8.01 9.10 -74.06 -0.67 7.33 16 Total: -1.00 -75.66 310.90 5.52 -70.14 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.38 Total: 14.74 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 2.99 Total: -34.78 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.28 Total: -59.75 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.16 Total: -38.51 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -75.66 5.52 -70.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.128 kcal (2) G-P(sol) polarization free energy of solvation -75.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds