Wall clock time and date at job start Mon Mar 30 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47305 * 2 1 4 4 C 1.53009 * 109.46753 * 119.98850 * 2 1 3 5 5 C 1.50706 * 109.46919 * 185.00182 * 4 2 1 6 6 H 1.08004 * 119.99909 * 0.02562 * 5 4 2 7 7 C 1.37868 * 119.99653 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00583 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47334 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47101 * 300.00506 * 9 7 5 12 12 H 1.48504 * 109.46792 * 60.00164 * 9 7 5 13 13 O 1.42892 * 109.47749 * 239.99244 * 2 1 3 14 14 C 1.35898 * 117.00152 * 84.92776 * 13 2 1 15 15 C 1.38652 * 119.94681 * 354.52667 * 14 13 2 16 16 C 1.38126 * 119.86905 * 179.71344 * 15 14 13 17 17 C 1.38169 * 119.99744 * 0.56211 * 16 15 14 18 18 C 1.38500 * 120.33504 * 359.72671 * 17 16 15 19 19 C 1.38171 * 119.88054 * 359.97438 * 18 17 16 20 20 C 1.51358 * 109.77927 * 180.02562 * 19 18 17 21 21 H 1.09005 * 110.30368 * 101.74346 * 20 19 18 22 22 O 1.42906 * 110.30268 * 223.89195 * 20 19 18 23 23 C 1.54347 * 105.16748 * 342.81732 * 20 19 18 24 24 C 1.51382 * 130.36701 * 180.02562 * 18 17 16 25 25 H 1.08998 * 109.47538 * 300.01027 * 1 2 3 26 26 H 1.08999 * 109.46978 * 60.01123 * 1 2 3 27 27 H 1.09001 * 109.46775 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46359 * 65.00829 * 4 2 1 29 29 H 1.08995 * 109.47519 * 305.00459 * 4 2 1 30 30 H 0.97003 * 119.99321 * 359.97438 * 8 7 5 31 31 H 1.08003 * 120.06564 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.99920 * 180.24696 * 16 15 14 33 33 H 1.07995 * 119.83334 * 179.71003 * 17 16 15 34 34 H 0.96700 * 113.99750 * 179.97438 * 22 20 19 35 35 H 1.08990 * 110.82641 * 144.55900 * 23 20 19 36 36 H 1.09004 * 110.82093 * 267.91572 * 23 20 19 37 37 H 1.08993 * 110.30129 * 78.24379 * 24 18 17 38 38 H 1.08997 * 110.29981 * 316.08907 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2495 5 6 3.5419 -0.6147 1.3130 6 1 4.0789 -0.0854 0.5398 7 6 4.2303 -1.1931 2.3582 8 7 3.5764 -1.8381 3.2995 9 14 6.0920 -1.0619 2.4366 10 1 6.5869 -1.7616 3.6493 11 1 6.6838 -1.6880 1.2270 12 1 6.4853 0.3689 2.4961 13 8 2.0064 -0.6737 -1.1666 14 6 2.1112 0.0619 -2.3044 15 6 1.6564 1.3716 -2.3262 16 6 1.7692 2.1198 -3.4818 17 6 2.3236 1.5591 -4.6164 18 6 2.7738 0.2494 -4.6011 19 6 2.6688 -0.5011 -3.4457 20 6 3.2266 -1.8879 -3.6833 21 1 4.2273 -1.9710 -3.2592 22 8 2.3625 -2.8740 -3.1147 23 6 3.2806 -2.0440 -5.2179 24 6 3.4098 -0.5816 -5.6949 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.7516 -1.7714 1.2058 29 1 1.6053 -0.2615 2.1371 30 1 2.6096 -1.9065 3.2585 31 1 1.2188 1.8072 -1.4401 32 1 1.4192 3.1414 -3.4999 33 1 2.4062 2.1450 -5.5198 34 1 2.6692 -3.7830 -3.2365 35 1 4.1510 -2.6274 -5.5177 36 1 2.3637 -2.4980 -5.5938 37 1 4.4598 -0.3133 -5.8116 38 1 2.8761 -0.4417 -6.6349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:13 Heat of formation + Delta-G solvation = -76.827598 kcal Electronic energy + Delta-G solvation = -20021.914371 eV Core-core repulsion = 17021.928065 eV Total energy + Delta-G solvation = -2999.986306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.33979 -38.28149 -36.41281 -34.14510 -33.62780 -31.63487 -29.56193 -28.82603 -27.09346 -26.17691 -23.25598 -22.44506 -21.66291 -20.68035 -19.58350 -17.43410 -17.16624 -16.79331 -15.87281 -15.31921 -14.73426 -14.43569 -14.15504 -13.82385 -13.65673 -13.33256 -12.95201 -12.85160 -12.47841 -12.09892 -11.99287 -11.68687 -11.51894 -11.49547 -11.23825 -11.09798 -10.75683 -10.60200 -10.46462 -10.17971 -10.02729 -9.82769 -9.60515 -8.53676 -8.43750 -8.31164 -7.65381 -6.33068 -4.00588 1.49083 1.77088 3.45645 3.48150 3.66706 3.91049 3.98430 4.40924 4.57328 4.58098 4.70332 5.01601 5.15347 5.26175 5.28134 5.43123 5.45490 5.57397 5.63438 5.68039 5.72996 5.79653 5.83604 5.88365 6.03241 6.10545 6.18210 6.24243 6.48910 6.58860 6.66850 6.70068 6.77138 7.04159 7.25647 7.38320 7.93223 8.14485 8.25437 8.48901 8.90630 9.69026 11.07778 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.006388 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.936463 B = 4381.909226 C = 4877.109646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.090 3.910 3 H 0.062 0.938 4 C 0.013 3.987 5 C -0.591 4.591 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 1.067 2.933 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.288 1.288 13 O -0.274 6.274 14 C 0.183 3.817 15 C -0.224 4.224 16 C -0.073 4.073 17 C -0.166 4.166 18 C -0.056 4.056 19 C -0.141 4.141 20 C 0.156 3.844 21 H 0.069 0.931 22 O -0.547 6.547 23 C -0.153 4.153 24 C -0.077 4.077 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.027 0.973 30 H 0.268 0.732 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.372 0.628 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 3.501 -17.087 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.035 3.965 3 H 0.080 0.920 4 C -0.024 4.024 5 C -0.629 4.629 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.551 5.551 9 Si 0.896 3.104 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.215 1.215 13 O -0.185 6.185 14 C 0.135 3.865 15 C -0.243 4.243 16 C -0.091 4.091 17 C -0.184 4.184 18 C -0.057 4.057 19 C -0.141 4.141 20 C 0.097 3.903 21 H 0.087 0.913 22 O -0.351 6.351 23 C -0.191 4.191 24 C -0.114 4.114 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.218 0.782 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.374 3.389 -15.955 16.368 hybrid contribution -1.137 0.304 -0.987 1.536 sum -2.511 3.693 -16.942 17.521 Atomic orbital electron populations 1.22418 0.97045 1.02632 1.01403 1.22671 0.91714 0.96889 0.85267 0.92036 1.19356 0.97588 0.95913 0.89500 1.21923 0.91424 1.38512 1.11065 0.93386 1.25793 1.06854 0.93492 0.92675 1.70794 1.10255 1.39921 1.34119 0.83567 0.74513 0.76246 0.76091 1.20735 1.21474 1.21504 1.86391 1.79076 1.37329 1.15717 1.18786 0.91208 0.89671 0.86820 1.21297 1.08311 0.94457 1.00203 1.20786 0.97180 0.98962 0.92183 1.20311 1.04871 0.94449 0.98805 1.20234 0.97122 0.93942 0.94364 1.19447 1.06016 0.96063 0.92610 1.20996 0.92976 0.85608 0.90732 0.91342 1.86713 1.50072 1.17622 1.80691 1.23080 1.02811 0.96770 0.96457 1.20958 1.00619 0.93154 0.96662 0.91563 0.93129 0.91910 0.96140 0.95517 0.92212 0.85031 0.86005 0.86525 0.78228 0.90475 0.90091 0.89962 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 9.17 37.16 0.34 -2.89 16 2 C 0.09 2.00 2.17 -26.73 -0.06 1.94 16 3 H 0.06 1.33 6.31 -51.93 -0.33 1.00 16 4 C 0.01 0.35 4.00 -27.88 -0.11 0.24 16 5 C -0.59 -17.35 8.88 -34.44 -0.31 -17.66 16 6 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 7 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 8 N -0.91 -28.44 13.65 55.43 0.76 -27.68 16 9 Si 1.07 26.07 29.90 -169.99 -5.08 20.99 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 O -0.27 -6.35 9.19 -19.42 -0.18 -6.52 16 14 C 0.18 3.69 6.60 -39.17 -0.26 3.43 16 15 C -0.22 -3.89 8.23 -39.47 -0.32 -4.21 16 16 C -0.07 -1.06 10.04 -39.65 -0.40 -1.45 16 17 C -0.17 -2.30 10.04 -39.51 -0.40 -2.69 16 18 C -0.06 -0.84 6.14 -104.22 -0.64 -1.48 16 19 C -0.14 -2.54 5.80 -104.06 -0.60 -3.14 16 20 C 0.16 2.47 4.17 -26.85 -0.11 2.36 16 21 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 22 O -0.55 -9.31 13.04 -35.23 -0.46 -9.77 16 23 C -0.15 -1.75 6.80 -25.31 -0.17 -1.92 16 24 C -0.08 -0.86 6.77 -26.84 -0.18 -1.05 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.83 6.90 -51.93 -0.36 0.47 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.02 0.57 8.01 -51.93 -0.42 0.16 16 29 H 0.03 0.71 8.01 -51.93 -0.42 0.29 16 30 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 31 H 0.13 2.18 5.41 -52.48 -0.28 1.90 16 32 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.37 4.40 9.12 45.56 0.42 4.82 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 313.17 15.07 4.72 4.72 Total: -1.00 -34.35 313.17 -8.25 -42.60 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.69 Total: 3.85 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -3.32 Total: -28.18 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 0.76 Total: -27.68 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.64 Total: -16.30 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.99 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.35 -8.25 -42.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.228 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds