Wall clock time and date at job start Mon Mar 30 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47305 * 2 1 4 4 C 1.53009 * 109.46753 * 119.98850 * 2 1 3 5 5 C 1.50706 * 109.46919 * 185.00182 * 4 2 1 6 6 H 1.08004 * 119.99909 * 0.02562 * 5 4 2 7 7 C 1.37868 * 119.99653 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00583 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47334 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47101 * 300.00506 * 9 7 5 12 12 H 1.48504 * 109.46792 * 60.00164 * 9 7 5 13 13 O 1.42892 * 109.47749 * 239.99244 * 2 1 3 14 14 C 1.35898 * 117.00152 * 84.92776 * 13 2 1 15 15 C 1.38652 * 119.94681 * 354.52667 * 14 13 2 16 16 C 1.38126 * 119.86905 * 179.71344 * 15 14 13 17 17 C 1.38169 * 119.99744 * 0.56211 * 16 15 14 18 18 C 1.38500 * 120.33504 * 359.72671 * 17 16 15 19 19 C 1.38171 * 119.88054 * 359.97438 * 18 17 16 20 20 C 1.51358 * 109.77927 * 180.02562 * 19 18 17 21 21 H 1.09005 * 110.30368 * 101.74346 * 20 19 18 22 22 O 1.42906 * 110.30268 * 223.89195 * 20 19 18 23 23 C 1.54347 * 105.16748 * 342.81732 * 20 19 18 24 24 C 1.51382 * 130.36701 * 180.02562 * 18 17 16 25 25 H 1.08998 * 109.47538 * 300.01027 * 1 2 3 26 26 H 1.08999 * 109.46978 * 60.01123 * 1 2 3 27 27 H 1.09001 * 109.46775 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46359 * 65.00829 * 4 2 1 29 29 H 1.08995 * 109.47519 * 305.00459 * 4 2 1 30 30 H 0.97003 * 119.99321 * 359.97438 * 8 7 5 31 31 H 1.08003 * 120.06564 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.99920 * 180.24696 * 16 15 14 33 33 H 1.07995 * 119.83334 * 179.71003 * 17 16 15 34 34 H 0.96700 * 113.99750 * 179.97438 * 22 20 19 35 35 H 1.08990 * 110.82641 * 144.55900 * 23 20 19 36 36 H 1.09004 * 110.82093 * 267.91572 * 23 20 19 37 37 H 1.08993 * 110.30129 * 78.24379 * 24 18 17 38 38 H 1.08997 * 110.29981 * 316.08907 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2495 5 6 3.5419 -0.6147 1.3130 6 1 4.0789 -0.0854 0.5398 7 6 4.2303 -1.1931 2.3582 8 7 3.5764 -1.8381 3.2995 9 14 6.0920 -1.0619 2.4366 10 1 6.5869 -1.7616 3.6493 11 1 6.6838 -1.6880 1.2270 12 1 6.4853 0.3689 2.4961 13 8 2.0064 -0.6737 -1.1666 14 6 2.1112 0.0619 -2.3044 15 6 1.6564 1.3716 -2.3262 16 6 1.7692 2.1198 -3.4818 17 6 2.3236 1.5591 -4.6164 18 6 2.7738 0.2494 -4.6011 19 6 2.6688 -0.5011 -3.4457 20 6 3.2266 -1.8879 -3.6833 21 1 4.2273 -1.9710 -3.2592 22 8 2.3625 -2.8740 -3.1147 23 6 3.2806 -2.0440 -5.2179 24 6 3.4098 -0.5816 -5.6949 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.7516 -1.7714 1.2058 29 1 1.6053 -0.2615 2.1371 30 1 2.6096 -1.9065 3.2585 31 1 1.2188 1.8072 -1.4401 32 1 1.4192 3.1414 -3.4999 33 1 2.4062 2.1450 -5.5198 34 1 2.6692 -3.7830 -3.2365 35 1 4.1510 -2.6274 -5.5177 36 1 2.3637 -2.4980 -5.5938 37 1 4.4598 -0.3133 -5.8116 38 1 2.8761 -0.4417 -6.6349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:12 Heat of formation + Delta-G solvation = -100.058595 kcal Electronic energy + Delta-G solvation = -20022.921743 eV Core-core repulsion = 17021.928065 eV Total energy + Delta-G solvation = -3000.993678 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60331 -39.71080 -37.66835 -35.90639 -35.10628 -33.47242 -30.84676 -29.97130 -29.02991 -27.32032 -25.27952 -23.88840 -22.94398 -21.86914 -21.06769 -19.07087 -18.77568 -18.38066 -17.24379 -16.53247 -16.17611 -15.77993 -15.64439 -15.35824 -15.02474 -14.81621 -14.64129 -14.28775 -13.93617 -13.54417 -13.33666 -13.17638 -13.10551 -12.83370 -12.64551 -12.54787 -12.33309 -12.03505 -11.92972 -11.79507 -11.61855 -11.40856 -10.99619 -10.71012 -10.59978 -9.59872 -9.00932 -8.72941 -6.41252 0.29950 0.52316 1.46286 1.55233 1.75488 2.43315 2.52071 2.74490 3.13030 3.38310 3.49587 3.65558 3.86198 4.03936 4.05485 4.08818 4.14354 4.21873 4.29855 4.40467 4.62373 4.63630 4.66048 4.80320 4.83757 4.91153 4.95754 4.98973 5.09155 5.12062 5.21847 5.24438 5.45147 5.49339 5.57545 5.89998 5.95976 6.11146 6.50341 6.68246 6.92738 7.37069 8.68403 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.006388 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.936463 B = 4381.909226 C = 4877.109646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 H 0.061 0.939 4 C 0.015 3.985 5 C -0.605 4.605 6 H 0.038 0.962 7 C -0.036 4.036 8 N -0.935 5.935 9 Si 1.114 2.886 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.267 1.267 13 O -0.310 6.310 14 C 0.136 3.864 15 C -0.238 4.238 16 C -0.071 4.071 17 C -0.157 4.157 18 C -0.057 4.057 19 C -0.176 4.176 20 C 0.144 3.856 21 H 0.053 0.947 22 O -0.577 6.577 23 C -0.138 4.138 24 C -0.073 4.073 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.052 0.948 28 H -0.009 1.009 29 H 0.021 0.979 30 H 0.255 0.745 31 H 0.131 0.869 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.388 0.612 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 5.015 -20.095 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 H 0.079 0.921 4 C -0.022 4.022 5 C -0.643 4.643 6 H 0.056 0.944 7 C -0.233 4.233 8 N -0.572 5.572 9 Si 0.935 3.065 10 H -0.202 1.202 11 H -0.201 1.201 12 H -0.192 1.192 13 O -0.223 6.223 14 C 0.090 3.910 15 C -0.257 4.257 16 C -0.089 4.089 17 C -0.175 4.175 18 C -0.057 4.057 19 C -0.177 4.177 20 C 0.085 3.915 21 H 0.070 0.930 22 O -0.384 6.384 23 C -0.176 4.176 24 C -0.110 4.110 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.148 0.852 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.237 0.763 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.551 4.908 -18.989 19.621 hybrid contribution -1.421 -0.144 -0.146 1.435 sum -1.971 4.764 -19.135 19.817 Atomic orbital electron populations 1.22297 0.94198 1.02575 1.03183 1.22400 0.93865 0.95735 0.83865 0.92068 1.19246 0.96424 0.94636 0.91914 1.22232 0.93058 1.38255 1.10734 0.94355 1.27364 1.11347 0.92506 0.92114 1.70920 1.09681 1.41464 1.35170 0.82989 0.69189 0.77627 0.76707 1.20177 1.20066 1.19203 1.86288 1.80521 1.38723 1.16769 1.19286 0.94192 0.91101 0.86459 1.21443 1.08788 0.93869 1.01576 1.21231 0.96222 1.00214 0.91208 1.20838 1.02604 0.94227 0.99854 1.20805 0.96180 0.94427 0.94274 1.20023 1.06650 0.97817 0.93231 1.21229 0.91658 0.84753 0.93854 0.92962 1.86661 1.51026 1.19159 1.81578 1.23011 1.04298 0.97806 0.92437 1.21092 1.01752 0.91765 0.96357 0.89856 0.91120 0.92855 0.99058 0.96136 0.93531 0.85168 0.82518 0.82530 0.76291 0.87695 0.89722 0.88066 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.15 9.17 71.98 0.66 -5.49 16 2 C 0.10 4.50 2.17 30.60 0.07 4.56 16 3 H 0.06 2.76 6.31 -2.39 -0.02 2.74 16 4 C 0.01 0.82 4.00 29.85 0.12 0.94 16 5 C -0.60 -36.90 8.88 25.60 0.23 -36.67 16 6 H 0.04 2.36 7.74 -2.91 -0.02 2.33 16 7 C -0.04 -2.19 5.46 84.65 0.46 -1.73 16 8 N -0.93 -59.89 13.65 21.44 0.29 -59.60 16 9 Si 1.11 52.79 29.90 68.60 2.05 54.84 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 O -0.31 -15.13 9.19 -92.40 -0.85 -15.97 16 14 C 0.14 5.61 6.60 22.54 0.15 5.76 16 15 C -0.24 -8.19 8.23 22.34 0.18 -8.00 16 16 C -0.07 -1.86 10.04 22.23 0.22 -1.64 16 17 C -0.16 -3.76 10.04 22.32 0.22 -3.53 16 18 C -0.06 -1.54 6.14 -19.60 -0.12 -1.66 16 19 C -0.18 -6.37 5.80 -19.50 -0.11 -6.48 16 20 C 0.14 4.58 4.17 30.51 0.13 4.71 16 21 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 22 O -0.58 -20.41 13.04 -148.98 -1.94 -22.35 16 23 C -0.14 -2.79 6.80 31.51 0.21 -2.58 16 24 C -0.07 -1.35 6.77 30.53 0.21 -1.14 16 25 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.07 2.32 6.90 -2.39 -0.02 2.30 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H -0.01 -0.54 8.01 -2.39 -0.02 -0.56 16 29 H 0.02 1.15 8.01 -2.39 -0.02 1.13 16 30 H 0.26 16.51 7.22 -92.71 -0.67 15.84 16 31 H 0.13 4.33 5.41 -2.91 -0.02 4.31 16 32 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.39 9.62 9.12 -74.06 -0.68 8.94 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.66 8.11 -2.38 -0.02 1.64 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -78.43 313.17 2.67 -75.76 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.48 Total: 20.28 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 2.63 Total: -52.96 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.29 Total: -59.60 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -2.79 Total: -38.33 kcal Atomic # 14 Polarization: 52.79 SS G_CDS: 2.05 Total: 54.84 kcal Total: -78.43 2.67 -75.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.297 kcal (2) G-P(sol) polarization free energy of solvation -78.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds