Wall clock time and date at job start Mon Mar 30 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47582 * 2 1 4 4 C 1.53005 * 109.47082 * 239.99560 * 2 1 3 5 5 C 1.50701 * 109.46977 * 174.99937 * 4 2 1 6 6 H 1.07998 * 120.00529 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99642 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00149 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99892 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47252 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47295 * 119.99746 * 9 7 5 12 12 H 1.48505 * 109.46859 * 240.00058 * 9 7 5 13 13 O 1.42907 * 109.47296 * 119.99950 * 2 1 3 14 14 C 1.35894 * 116.99939 * 275.23874 * 13 2 1 15 15 C 1.38651 * 119.95341 * 5.40872 * 14 13 2 16 16 C 1.38114 * 119.87334 * 179.71778 * 15 14 13 17 17 C 1.38168 * 119.99648 * 0.54950 * 16 15 14 18 18 C 1.38492 * 120.33741 * 359.73777 * 17 16 15 19 19 C 1.38176 * 119.88109 * 359.97438 * 18 17 16 20 20 C 1.51361 * 109.78103 * 180.02562 * 19 18 17 21 21 H 1.08999 * 110.30158 * 101.74347 * 20 19 18 22 22 O 1.42900 * 110.30068 * 223.89307 * 20 19 18 23 23 C 1.54347 * 105.16226 * 342.81672 * 20 19 18 24 24 C 1.51378 * 130.37170 * 180.02562 * 18 17 16 25 25 H 1.09001 * 109.47348 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46824 * 300.00098 * 1 2 3 27 27 H 1.08992 * 109.47284 * 60.00014 * 1 2 3 28 28 H 1.08997 * 109.46621 * 55.00587 * 4 2 1 29 29 H 1.08996 * 109.47061 * 294.99947 * 4 2 1 30 30 H 0.96997 * 120.00168 * 0.02562 * 8 7 5 31 31 H 1.08010 * 120.05791 * 359.97438 * 15 14 13 32 32 H 1.08005 * 120.00060 * 180.24761 * 16 15 14 33 33 H 1.08010 * 119.83598 * 179.70976 * 17 16 15 34 34 H 0.96696 * 113.99600 * 179.97438 * 22 20 19 35 35 H 1.08999 * 110.81802 * 144.56143 * 23 20 19 36 36 H 1.08995 * 110.82492 * 267.91179 * 23 20 19 37 37 H 1.08997 * 110.30305 * 78.23142 * 24 18 17 38 38 H 1.09004 * 110.30064 * 316.09089 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5762 -1.8372 -3.2999 9 14 6.0920 -1.0616 -2.4367 10 1 6.5838 -0.2921 -1.2657 11 1 6.6853 -2.4228 -2.4196 12 1 6.4869 -0.3651 -3.6874 13 8 2.0063 -0.6737 1.1668 14 6 2.1078 0.0613 2.3053 15 6 1.6511 1.3703 2.3273 16 6 1.7497 2.1139 3.4870 17 6 2.3129 1.5568 4.6190 18 6 2.7758 0.2517 4.6002 19 6 2.6740 -0.4982 3.4441 20 6 3.2451 -1.8803 3.6781 21 1 2.4414 -2.6010 3.8293 22 8 4.0627 -2.2724 2.5736 23 6 4.0985 -1.7531 4.9578 24 6 3.4222 -0.5753 5.6910 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -0.2618 -2.1369 29 1 1.7516 -1.7716 -1.2055 30 1 2.6096 -1.9057 -3.2591 31 1 1.2154 1.8062 1.4403 32 1 1.3910 3.1325 3.5075 33 1 2.3930 2.1422 5.5232 34 1 4.4564 -3.1505 2.6681 35 1 4.0417 -2.6642 5.5535 36 1 5.1338 -1.5173 4.7114 37 1 2.6661 -0.9449 6.3837 38 1 4.1668 0.0166 6.2234 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:14 Heat of formation + Delta-G solvation = -75.357968 kcal Electronic energy + Delta-G solvation = -20087.368179 eV Core-core repulsion = 17087.445601 eV Total energy + Delta-G solvation = -2999.922578 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.33276 -38.26992 -36.36711 -34.10136 -33.59228 -31.61458 -29.55757 -28.81591 -27.07176 -26.15948 -23.22630 -22.42358 -21.65600 -20.65959 -19.57978 -17.40007 -17.15433 -16.74477 -15.81192 -15.30675 -14.69236 -14.54401 -14.07749 -13.80764 -13.61585 -13.23829 -12.92864 -12.84512 -12.46689 -12.20039 -11.87395 -11.65042 -11.60750 -11.43459 -11.11215 -11.07624 -10.78790 -10.57300 -10.42761 -10.12751 -10.00552 -9.75222 -9.59717 -8.47705 -8.43731 -8.24741 -7.65192 -6.27069 -3.93483 1.49128 1.76858 3.51224 3.55480 3.71395 3.87725 4.01380 4.42825 4.63141 4.63544 4.73746 5.02825 5.14878 5.27172 5.28212 5.43477 5.50845 5.55488 5.61375 5.70010 5.70223 5.80098 5.83519 5.87438 6.03125 6.12819 6.17623 6.23700 6.47400 6.57780 6.66672 6.70373 6.77512 7.04657 7.27350 7.39867 8.04224 8.17292 8.29553 8.58654 8.97740 9.75328 11.14026 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.006794 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.353017 B = 4120.008419 C = 4898.934582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.091 3.909 3 H 0.062 0.938 4 C 0.014 3.986 5 C -0.584 4.584 6 H 0.051 0.949 7 C 0.014 3.986 8 N -0.919 5.919 9 Si 1.074 2.926 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.289 1.289 13 O -0.275 6.275 14 C 0.183 3.817 15 C -0.224 4.224 16 C -0.073 4.073 17 C -0.166 4.166 18 C -0.056 4.056 19 C -0.141 4.141 20 C 0.155 3.845 21 H 0.063 0.937 22 O -0.537 6.537 23 C -0.154 4.154 24 C -0.077 4.077 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.019 0.981 30 H 0.267 0.733 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.371 0.629 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 3.237 17.429 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.035 3.965 3 H 0.080 0.920 4 C -0.023 4.023 5 C -0.622 4.622 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.556 5.556 9 Si 0.903 3.097 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.216 1.216 13 O -0.186 6.186 14 C 0.135 3.865 15 C -0.243 4.243 16 C -0.091 4.091 17 C -0.184 4.184 18 C -0.056 4.056 19 C -0.142 4.142 20 C 0.096 3.904 21 H 0.080 0.920 22 O -0.340 6.340 23 C -0.192 4.192 24 C -0.114 4.114 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.216 0.784 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.065 3.192 16.255 16.694 hybrid contribution -1.374 0.188 1.045 1.736 sum -3.439 3.380 17.300 17.959 Atomic orbital electron populations 1.22440 0.97150 1.02508 1.01504 1.22674 0.91483 0.97042 0.85311 0.91982 1.19355 0.97821 0.95748 0.89386 1.21978 0.91257 1.38146 1.10807 0.93099 1.25776 1.06825 0.93514 0.92709 1.70741 1.10145 1.40404 1.34352 0.83482 0.74509 0.76393 0.75354 1.21503 1.21384 1.21574 1.86375 1.79097 1.37412 1.15719 1.18788 0.91154 0.89841 0.86713 1.21297 1.08302 0.94589 1.00084 1.20782 0.97182 0.98978 0.92182 1.20314 1.04782 0.94495 0.98854 1.20236 0.97292 0.93512 0.94602 1.19456 1.05186 0.96671 0.92857 1.20958 0.91481 0.92472 0.85521 0.91972 1.86877 1.66958 1.37929 1.42271 1.23090 1.00717 0.98461 0.96946 1.20953 0.99105 0.95375 0.95930 0.92032 0.93124 0.91476 0.95594 0.96301 0.92303 0.85040 0.86014 0.86535 0.78354 0.90573 0.89883 0.90108 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 9.17 37.15 0.34 -2.83 16 2 C 0.09 2.00 2.17 -26.73 -0.06 1.95 16 3 H 0.06 1.36 6.32 -51.93 -0.33 1.03 16 4 C 0.01 0.36 4.00 -27.88 -0.11 0.25 16 5 C -0.58 -17.42 8.88 -34.44 -0.31 -17.72 16 6 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 8 N -0.92 -28.89 13.65 55.43 0.76 -28.13 16 9 Si 1.07 26.89 29.90 -169.99 -5.08 21.80 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 O -0.27 -6.34 9.20 -19.41 -0.18 -6.52 16 14 C 0.18 3.67 6.60 -39.17 -0.26 3.42 16 15 C -0.22 -3.88 8.23 -39.47 -0.32 -4.21 16 16 C -0.07 -1.06 10.04 -39.65 -0.40 -1.46 16 17 C -0.17 -2.30 10.03 -39.51 -0.40 -2.69 16 18 C -0.06 -0.84 6.14 -104.22 -0.64 -1.48 16 19 C -0.14 -2.54 5.80 -104.06 -0.60 -3.14 16 20 C 0.15 2.44 4.17 -26.85 -0.11 2.33 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 O -0.54 -9.95 13.04 -35.23 -0.46 -10.41 16 23 C -0.15 -1.81 6.80 -25.32 -0.17 -1.98 16 24 C -0.08 -0.86 6.77 -26.84 -0.18 -1.04 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.80 6.89 -51.93 -0.36 0.44 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.03 0.69 8.01 -51.93 -0.42 0.28 16 29 H 0.02 0.53 8.01 -51.93 -0.42 0.11 16 30 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 31 H 0.13 2.17 5.41 -52.48 -0.28 1.89 16 32 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.37 4.91 9.12 45.56 0.42 5.32 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -35.03 313.14 -8.25 -43.28 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.69 Total: 3.53 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -3.32 Total: -28.28 kcal Atomic # 7 Polarization: -28.89 SS G_CDS: 0.76 Total: -28.13 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.64 Total: -16.93 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -5.08 Total: 21.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.03 -8.25 -43.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.079 kcal (2) G-P(sol) polarization free energy of solvation -35.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds