Wall clock time and date at job start Mon Mar 30 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47582 * 2 1 4 4 C 1.53005 * 109.47082 * 239.99560 * 2 1 3 5 5 C 1.50701 * 109.46977 * 174.99937 * 4 2 1 6 6 H 1.07998 * 120.00529 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99642 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00149 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99892 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47252 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47295 * 119.99746 * 9 7 5 12 12 H 1.48505 * 109.46859 * 240.00058 * 9 7 5 13 13 O 1.42907 * 109.47296 * 119.99950 * 2 1 3 14 14 C 1.35894 * 116.99939 * 275.23874 * 13 2 1 15 15 C 1.38651 * 119.95341 * 5.40872 * 14 13 2 16 16 C 1.38114 * 119.87334 * 179.71778 * 15 14 13 17 17 C 1.38168 * 119.99648 * 0.54950 * 16 15 14 18 18 C 1.38492 * 120.33741 * 359.73777 * 17 16 15 19 19 C 1.38176 * 119.88109 * 359.97438 * 18 17 16 20 20 C 1.51361 * 109.78103 * 180.02562 * 19 18 17 21 21 H 1.08999 * 110.30158 * 101.74347 * 20 19 18 22 22 O 1.42900 * 110.30068 * 223.89307 * 20 19 18 23 23 C 1.54347 * 105.16226 * 342.81672 * 20 19 18 24 24 C 1.51378 * 130.37170 * 180.02562 * 18 17 16 25 25 H 1.09001 * 109.47348 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46824 * 300.00098 * 1 2 3 27 27 H 1.08992 * 109.47284 * 60.00014 * 1 2 3 28 28 H 1.08997 * 109.46621 * 55.00587 * 4 2 1 29 29 H 1.08996 * 109.47061 * 294.99947 * 4 2 1 30 30 H 0.96997 * 120.00168 * 0.02562 * 8 7 5 31 31 H 1.08010 * 120.05791 * 359.97438 * 15 14 13 32 32 H 1.08005 * 120.00060 * 180.24761 * 16 15 14 33 33 H 1.08010 * 119.83598 * 179.70976 * 17 16 15 34 34 H 0.96696 * 113.99600 * 179.97438 * 22 20 19 35 35 H 1.08999 * 110.81802 * 144.56143 * 23 20 19 36 36 H 1.08995 * 110.82492 * 267.91179 * 23 20 19 37 37 H 1.08997 * 110.30305 * 78.23142 * 24 18 17 38 38 H 1.09004 * 110.30064 * 316.09089 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5762 -1.8372 -3.2999 9 14 6.0920 -1.0616 -2.4367 10 1 6.5838 -0.2921 -1.2657 11 1 6.6853 -2.4228 -2.4196 12 1 6.4869 -0.3651 -3.6874 13 8 2.0063 -0.6737 1.1668 14 6 2.1078 0.0613 2.3053 15 6 1.6511 1.3703 2.3273 16 6 1.7497 2.1139 3.4870 17 6 2.3129 1.5568 4.6190 18 6 2.7758 0.2517 4.6002 19 6 2.6740 -0.4982 3.4441 20 6 3.2451 -1.8803 3.6781 21 1 2.4414 -2.6010 3.8293 22 8 4.0627 -2.2724 2.5736 23 6 4.0985 -1.7531 4.9578 24 6 3.4222 -0.5753 5.6910 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -0.2618 -2.1369 29 1 1.7516 -1.7716 -1.2055 30 1 2.6096 -1.9057 -3.2591 31 1 1.2154 1.8062 1.4403 32 1 1.3910 3.1325 3.5075 33 1 2.3930 2.1422 5.5232 34 1 4.4564 -3.1505 2.6681 35 1 4.0417 -2.6642 5.5535 36 1 5.1338 -1.5173 4.7114 37 1 2.6661 -0.9449 6.3837 38 1 4.1668 0.0166 6.2234 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:14 Heat of formation + Delta-G solvation = -99.265476 kcal Electronic energy + Delta-G solvation = -20088.404887 eV Core-core repulsion = 17087.445601 eV Total energy + Delta-G solvation = -3000.959286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59666 -39.70091 -37.65569 -35.88774 -35.09737 -33.46069 -30.84125 -29.96699 -29.01206 -27.30655 -25.25908 -23.87926 -22.94233 -21.85457 -21.06314 -19.05624 -18.75846 -18.38961 -17.17875 -16.51334 -16.23403 -15.76355 -15.66931 -15.30733 -15.05559 -14.75486 -14.58656 -14.28034 -13.94119 -13.52075 -13.39855 -13.16021 -13.05730 -12.79519 -12.66864 -12.55917 -12.21152 -12.02941 -11.99672 -11.79526 -11.63853 -11.36753 -10.96832 -10.68493 -10.57288 -9.59454 -9.00408 -8.70653 -6.37455 0.30150 0.52172 1.46203 1.56599 1.75168 2.43127 2.52750 2.74901 3.15158 3.39204 3.54581 3.67544 3.87034 4.03565 4.04719 4.09761 4.14478 4.21940 4.30889 4.40679 4.61944 4.64472 4.66663 4.80737 4.84624 4.91084 4.96012 4.99671 5.09498 5.12798 5.23117 5.25344 5.45416 5.49474 5.57850 5.92383 5.97249 6.15271 6.53969 6.69224 6.98107 7.39131 8.71118 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.006794 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.353017 B = 4120.008419 C = 4898.934582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 H 0.058 0.942 4 C 0.015 3.985 5 C -0.596 4.596 6 H 0.033 0.967 7 C -0.035 4.035 8 N -0.937 5.937 9 Si 1.119 2.881 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.271 1.271 13 O -0.310 6.310 14 C 0.136 3.864 15 C -0.239 4.239 16 C -0.071 4.071 17 C -0.158 4.158 18 C -0.057 4.057 19 C -0.176 4.176 20 C 0.143 3.857 21 H 0.065 0.935 22 O -0.577 6.577 23 C -0.142 4.142 24 C -0.072 4.072 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.021 0.979 29 H -0.008 1.008 30 H 0.256 0.744 31 H 0.130 0.870 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.386 0.614 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 4.512 20.334 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 H 0.076 0.924 4 C -0.022 4.022 5 C -0.634 4.634 6 H 0.051 0.949 7 C -0.232 4.232 8 N -0.575 5.575 9 Si 0.941 3.059 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.196 1.196 13 O -0.223 6.223 14 C 0.090 3.910 15 C -0.257 4.257 16 C -0.089 4.089 17 C -0.176 4.176 18 C -0.057 4.057 19 C -0.177 4.177 20 C 0.084 3.916 21 H 0.082 0.918 22 O -0.384 6.384 23 C -0.179 4.179 24 C -0.108 4.108 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.039 0.961 29 H 0.011 0.989 30 H 0.065 0.935 31 H 0.148 0.852 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.235 0.765 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.519 4.466 19.180 19.751 hybrid contribution -1.578 -0.182 0.250 1.608 sum -3.097 4.285 19.430 20.136 Atomic orbital electron populations 1.22309 0.93891 1.02745 1.03319 1.22397 0.93937 0.95650 0.83888 0.92418 1.19243 0.96355 0.94658 0.91919 1.22226 0.93070 1.37870 1.10257 0.94857 1.27281 1.11170 0.92597 0.92192 1.70862 1.09655 1.41779 1.35246 0.82905 0.69419 0.77257 0.76315 1.20770 1.20110 1.19593 1.86270 1.80560 1.38733 1.16749 1.19284 0.94050 0.91295 0.86388 1.21445 1.08825 0.94008 1.01445 1.21223 0.96273 1.00205 0.91216 1.20838 1.02570 0.94288 0.99890 1.20809 0.96421 0.93947 0.94538 1.20040 1.05729 0.98466 0.93493 1.21276 0.92078 0.91721 0.86513 0.91769 1.86815 1.67682 1.39415 1.44518 1.23030 0.99404 1.00455 0.95021 1.21083 1.00017 0.94661 0.95064 0.92559 0.90911 0.89908 0.96125 0.98941 0.93488 0.85195 0.82560 0.82581 0.76514 0.87322 0.90583 0.87473 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.97 9.17 71.98 0.66 -5.31 16 2 C 0.10 4.49 2.17 30.59 0.07 4.56 16 3 H 0.06 2.64 6.32 -2.39 -0.02 2.63 16 4 C 0.02 0.84 4.00 29.85 0.12 0.96 16 5 C -0.60 -37.10 8.88 25.60 0.23 -36.87 16 6 H 0.03 2.14 7.74 -2.91 -0.02 2.12 16 7 C -0.04 -2.19 5.46 84.65 0.46 -1.72 16 8 N -0.94 -60.48 13.65 21.45 0.29 -60.18 16 9 Si 1.12 54.68 29.90 68.60 2.05 56.73 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 13 O -0.31 -15.07 9.20 -92.35 -0.85 -15.92 16 14 C 0.14 5.61 6.60 22.54 0.15 5.76 16 15 C -0.24 -8.22 8.23 22.34 0.18 -8.03 16 16 C -0.07 -1.88 10.04 22.22 0.22 -1.66 16 17 C -0.16 -3.79 10.03 22.31 0.22 -3.57 16 18 C -0.06 -1.55 6.14 -19.60 -0.12 -1.67 16 19 C -0.18 -6.34 5.80 -19.50 -0.11 -6.46 16 20 C 0.14 4.49 4.17 30.52 0.13 4.62 16 21 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 22 O -0.58 -22.29 13.04 -148.98 -1.94 -24.23 16 23 C -0.14 -2.96 6.80 31.51 0.21 -2.75 16 24 C -0.07 -1.32 6.77 30.52 0.21 -1.12 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.07 2.28 6.89 -2.39 -0.02 2.27 16 27 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.02 1.16 8.01 -2.39 -0.02 1.14 16 29 H -0.01 -0.47 8.01 -2.39 -0.02 -0.49 16 30 H 0.26 16.59 7.22 -92.71 -0.67 15.92 16 31 H 0.13 4.33 5.41 -2.91 -0.02 4.31 16 32 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.39 10.75 9.12 -74.06 -0.68 10.08 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.70 8.11 -2.39 -0.02 1.68 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -79.92 313.14 2.67 -77.25 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.48 Total: 19.62 kcal Atomic # 6 Polarization: -55.89 SS G_CDS: 2.63 Total: -53.26 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.29 Total: -60.18 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -2.79 Total: -40.16 kcal Atomic # 14 Polarization: 54.68 SS G_CDS: 2.05 Total: 56.73 kcal Total: -79.92 2.67 -77.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.016 kcal (2) G-P(sol) polarization free energy of solvation -79.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds