Wall clock time and date at job start Mon Mar 30 2020 06:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46796 * 2 1 4 4 C 1.53003 * 109.46870 * 119.99900 * 2 1 3 5 5 C 1.50708 * 109.46747 * 185.00124 * 4 2 1 6 6 H 1.08003 * 119.99588 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99994 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99744 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00193 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47416 * 59.99682 * 9 7 5 11 11 H 1.48497 * 109.47396 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46844 * 299.99898 * 9 7 5 13 13 O 1.42896 * 109.47154 * 239.99896 * 2 1 3 14 14 C 1.35909 * 116.99996 * 84.81936 * 13 2 1 15 15 C 1.38749 * 120.08779 * 354.62845 * 14 13 2 16 16 C 1.38005 * 119.87623 * 180.02562 * 15 14 13 17 17 C 1.38543 * 120.28824 * 359.97438 * 16 15 14 18 18 C 1.38268 * 119.94217 * 0.02562 * 17 16 15 19 19 C 1.38410 * 119.89938 * 359.96641 * 18 17 16 20 20 C 1.51376 * 109.75652 * 179.97438 * 18 17 16 21 21 C 1.54349 * 105.17043 * 342.81099 * 20 18 17 22 22 C 1.51391 * 130.31788 * 180.02562 * 17 16 15 23 23 H 1.09000 * 110.30324 * 316.13525 * 22 17 16 24 24 O 1.42904 * 110.30088 * 78.28748 * 22 17 16 25 25 H 1.09002 * 109.47118 * 299.99620 * 1 2 3 26 26 H 1.08995 * 109.47164 * 60.00178 * 1 2 3 27 27 H 1.08996 * 109.46796 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47397 * 305.00135 * 4 2 1 29 29 H 1.08995 * 109.47136 * 65.00757 * 4 2 1 30 30 H 0.96996 * 119.99985 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.06534 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.85709 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.91211 * 180.02562 * 19 18 17 34 34 H 1.08997 * 110.30102 * 223.88592 * 20 18 17 35 35 H 1.09001 * 110.30066 * 101.73180 * 20 18 17 36 36 H 1.09001 * 110.81855 * 144.58897 * 21 20 18 37 37 H 1.08997 * 110.81678 * 268.13579 * 21 20 18 38 38 H 0.96697 * 113.99742 * 295.74941 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5420 -0.6149 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1934 2.3578 8 7 3.5765 -1.8377 3.2995 9 14 6.0920 -1.0610 2.4369 10 1 6.4844 0.3699 2.4973 11 1 6.5872 -1.7621 3.6486 12 1 6.6846 -1.6861 1.2271 13 8 2.0064 -0.6736 -1.1667 14 6 2.1089 0.0617 -2.3051 15 6 1.6547 1.3725 -2.3298 16 6 1.7606 2.1150 -3.4882 17 6 2.3190 1.5575 -4.6270 18 6 2.7723 0.2515 -4.6048 19 6 2.6677 -0.4956 -3.4444 20 6 3.3332 -0.1186 -5.9613 21 6 2.7786 0.9459 -6.9317 22 6 2.5450 2.1540 -5.9999 23 1 1.6653 2.7129 -6.3190 24 8 3.6953 3.0019 -5.9888 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -0.2618 2.1370 29 1 1.7517 -1.7715 1.2056 30 1 4.0608 -2.2451 4.0345 31 1 1.2184 1.8107 -1.4443 32 1 1.4073 3.1355 -3.5070 33 1 3.0221 -1.5157 -3.4268 34 1 2.9916 -1.1115 -6.2537 35 1 4.4224 -0.0826 -5.9428 36 1 3.5111 1.1869 -7.7021 37 1 1.8412 0.6130 -7.3773 38 1 3.6060 3.7785 -5.4197 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813641.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:45 Heat of formation + Delta-G solvation = -76.156660 kcal Electronic energy + Delta-G solvation = -19419.662174 eV Core-core repulsion = 16419.704962 eV Total energy + Delta-G solvation = -2999.957212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36276 -38.71278 -36.20869 -34.12970 -33.31127 -31.76035 -30.37359 -28.41783 -27.42909 -26.41762 -23.38240 -22.69873 -21.49689 -20.70562 -19.51841 -17.75187 -17.30149 -16.39120 -16.03110 -15.29504 -14.84424 -14.44737 -14.37039 -14.24036 -13.77433 -13.24243 -13.01362 -12.80361 -12.36161 -12.15990 -12.03618 -11.81915 -11.66617 -11.44426 -11.35142 -11.00305 -10.93433 -10.72803 -10.59699 -10.35244 -10.06956 -9.96680 -9.39444 -9.13585 -8.58458 -8.39421 -7.70543 -6.02697 -4.04268 1.54159 1.63434 3.34257 3.37972 3.41993 3.76695 3.92287 4.20055 4.45603 4.47765 4.69837 4.93350 5.06649 5.08252 5.33864 5.36981 5.46769 5.55227 5.59807 5.63754 5.72341 5.74167 5.85710 5.88594 5.98215 6.00853 6.18446 6.30478 6.47137 6.53570 6.64258 6.77453 6.78922 7.00304 7.47660 7.52574 7.57210 7.93610 8.12912 8.34898 8.99085 9.59257 11.08695 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.004815 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.772280 B = 5813.920261 C = 6408.328108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.063 0.937 4 C 0.026 3.974 5 C -0.515 4.515 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 O -0.289 6.289 14 C 0.164 3.836 15 C -0.219 4.219 16 C -0.056 4.056 17 C -0.201 4.201 18 C -0.042 4.042 19 C -0.156 4.156 20 C -0.081 4.081 21 C -0.113 4.113 22 C 0.153 3.847 23 H 0.059 0.941 24 O -0.560 6.560 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 7.394 -16.980 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.081 0.919 4 C -0.011 4.011 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 O -0.201 6.201 14 C 0.116 3.884 15 C -0.238 4.238 16 C -0.074 4.074 17 C -0.201 4.201 18 C -0.043 4.043 19 C -0.175 4.175 20 C -0.117 4.117 21 C -0.150 4.150 22 C 0.094 3.906 23 H 0.077 0.923 24 O -0.366 6.366 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.742 6.623 -17.171 19.005 hybrid contribution 0.683 0.636 0.816 1.240 sum -4.059 7.259 -16.354 18.348 Atomic orbital electron populations 1.22417 0.96971 1.02653 1.01461 1.22895 0.91837 0.97144 0.85057 0.91929 1.19267 0.96601 0.96511 0.88719 1.21082 0.91671 1.34615 1.07988 0.92683 1.24966 0.98484 0.95189 0.95619 1.69938 1.35687 1.35882 1.12112 0.86638 0.85645 0.78246 0.77415 1.20247 1.21236 1.20161 1.86283 1.79620 1.38109 1.16119 1.19053 0.91826 0.90054 0.87450 1.21257 1.08093 0.94873 0.99547 1.20304 0.96975 0.98783 0.91382 1.20908 1.06071 0.96512 0.96648 1.20202 0.95817 0.93963 0.94285 1.19826 1.05594 1.01355 0.90675 1.21051 1.00956 0.99160 0.90583 1.22284 1.02009 0.93452 0.97255 1.21021 0.87707 0.91029 0.90804 0.92308 1.86513 1.40349 1.39280 1.70460 0.91341 0.93281 0.91885 0.94330 0.95265 0.92865 0.84951 0.86630 0.85441 0.90435 0.89784 0.89706 0.89804 0.77511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 9.17 37.16 0.34 -2.66 16 2 C 0.09 1.79 2.17 -26.73 -0.06 1.73 16 3 H 0.06 1.27 6.32 -51.93 -0.33 0.94 16 4 C 0.03 0.66 4.68 -27.88 -0.13 0.53 16 5 C -0.52 -14.66 8.88 -34.44 -0.31 -14.97 16 6 H 0.05 1.57 7.74 -52.48 -0.41 1.16 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 O -0.29 -6.24 9.55 -19.45 -0.19 -6.43 16 14 C 0.16 3.06 6.60 -39.26 -0.26 2.80 16 15 C -0.22 -3.56 8.24 -39.48 -0.33 -3.88 16 16 C -0.06 -0.78 10.03 -39.55 -0.40 -1.18 16 17 C -0.20 -2.75 5.81 -104.16 -0.61 -3.36 16 18 C -0.04 -0.62 6.13 -104.22 -0.64 -1.26 16 19 C -0.16 -2.66 9.98 -39.39 -0.39 -3.06 16 20 C -0.08 -0.93 6.77 -26.84 -0.18 -1.11 16 21 C -0.11 -1.12 6.81 -25.32 -0.17 -1.29 16 22 C 0.15 1.70 4.22 -26.84 -0.11 1.59 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 O -0.56 -6.46 13.35 -35.23 -0.47 -6.93 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.73 6.90 -51.93 -0.36 0.38 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.13 2.04 5.44 -52.48 -0.29 1.75 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.38 3.05 9.12 45.56 0.42 3.47 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -31.96 315.18 -8.27 -40.23 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.75 Total: 1.96 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -3.34 Total: -24.53 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.66 Total: -13.36 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.96 -8.27 -40.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813641.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.924 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds