Wall clock time and date at job start Mon Mar 30 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46796 * 2 1 4 4 C 1.53003 * 109.46870 * 119.99900 * 2 1 3 5 5 C 1.50708 * 109.46747 * 185.00124 * 4 2 1 6 6 H 1.08003 * 119.99588 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99994 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99744 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00193 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47416 * 59.99682 * 9 7 5 11 11 H 1.48497 * 109.47396 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46844 * 299.99898 * 9 7 5 13 13 O 1.42896 * 109.47154 * 239.99896 * 2 1 3 14 14 C 1.35909 * 116.99996 * 84.81936 * 13 2 1 15 15 C 1.38749 * 120.08779 * 354.62845 * 14 13 2 16 16 C 1.38005 * 119.87623 * 180.02562 * 15 14 13 17 17 C 1.38543 * 120.28824 * 359.97438 * 16 15 14 18 18 C 1.38268 * 119.94217 * 0.02562 * 17 16 15 19 19 C 1.38410 * 119.89938 * 359.96641 * 18 17 16 20 20 C 1.51376 * 109.75652 * 179.97438 * 18 17 16 21 21 C 1.54349 * 105.17043 * 342.81099 * 20 18 17 22 22 C 1.51391 * 130.31788 * 180.02562 * 17 16 15 23 23 H 1.09000 * 110.30324 * 316.13525 * 22 17 16 24 24 O 1.42904 * 110.30088 * 78.28748 * 22 17 16 25 25 H 1.09002 * 109.47118 * 299.99620 * 1 2 3 26 26 H 1.08995 * 109.47164 * 60.00178 * 1 2 3 27 27 H 1.08996 * 109.46796 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47397 * 305.00135 * 4 2 1 29 29 H 1.08995 * 109.47136 * 65.00757 * 4 2 1 30 30 H 0.96996 * 119.99985 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.06534 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.85709 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.91211 * 180.02562 * 19 18 17 34 34 H 1.08997 * 110.30102 * 223.88592 * 20 18 17 35 35 H 1.09001 * 110.30066 * 101.73180 * 20 18 17 36 36 H 1.09001 * 110.81855 * 144.58897 * 21 20 18 37 37 H 1.08997 * 110.81678 * 268.13579 * 21 20 18 38 38 H 0.96697 * 113.99742 * 295.74941 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5420 -0.6149 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1934 2.3578 8 7 3.5765 -1.8377 3.2995 9 14 6.0920 -1.0610 2.4369 10 1 6.4844 0.3699 2.4973 11 1 6.5872 -1.7621 3.6486 12 1 6.6846 -1.6861 1.2271 13 8 2.0064 -0.6736 -1.1667 14 6 2.1089 0.0617 -2.3051 15 6 1.6547 1.3725 -2.3298 16 6 1.7606 2.1150 -3.4882 17 6 2.3190 1.5575 -4.6270 18 6 2.7723 0.2515 -4.6048 19 6 2.6677 -0.4956 -3.4444 20 6 3.3332 -0.1186 -5.9613 21 6 2.7786 0.9459 -6.9317 22 6 2.5450 2.1540 -5.9999 23 1 1.6653 2.7129 -6.3190 24 8 3.6953 3.0019 -5.9888 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -0.2618 2.1370 29 1 1.7517 -1.7715 1.2056 30 1 4.0608 -2.2451 4.0345 31 1 1.2184 1.8107 -1.4443 32 1 1.4073 3.1355 -3.5070 33 1 3.0221 -1.5157 -3.4268 34 1 2.9916 -1.1115 -6.2537 35 1 4.4224 -0.0826 -5.9428 36 1 3.5111 1.1869 -7.7021 37 1 1.8412 0.6130 -7.3773 38 1 3.6060 3.7785 -5.4197 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813641.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:44 Heat of formation + Delta-G solvation = -96.731936 kcal Electronic energy + Delta-G solvation = -19420.554385 eV Core-core repulsion = 16419.704962 eV Total energy + Delta-G solvation = -3000.849423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54397 -40.00417 -37.28848 -35.57626 -34.84172 -33.50182 -31.61171 -29.66072 -29.18739 -27.40650 -25.31864 -23.84049 -22.97646 -21.62247 -20.95294 -18.85862 -18.54010 -18.47077 -17.20690 -16.76034 -16.24205 -16.15685 -15.59153 -15.28880 -14.76904 -14.67578 -14.25625 -14.18103 -13.90320 -13.62906 -13.35981 -13.28809 -13.21073 -12.78055 -12.65898 -12.63599 -12.35083 -12.17342 -11.93940 -11.65674 -11.62747 -11.30336 -11.05591 -10.92405 -10.61436 -9.76243 -9.00082 -8.24027 -6.33297 0.35474 0.42673 1.35640 1.38495 1.46561 2.37190 2.37740 2.72383 3.10233 3.37664 3.53361 3.77515 3.89967 4.04853 4.06021 4.19477 4.20885 4.32972 4.41895 4.42829 4.53736 4.69711 4.78247 4.81214 4.96482 4.98727 5.01929 5.15314 5.19475 5.23546 5.30588 5.34369 5.46321 5.48710 5.63610 5.72964 5.88851 6.15743 6.67037 6.78190 6.86023 7.34269 8.87517 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.004815 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.772280 B = 5813.920261 C = 6408.328108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.534 4.534 6 H 0.048 0.952 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.275 1.275 13 O -0.322 6.322 14 C 0.127 3.873 15 C -0.226 4.226 16 C -0.052 4.052 17 C -0.196 4.196 18 C -0.051 4.051 19 C -0.177 4.177 20 C -0.083 4.083 21 C -0.109 4.109 22 C 0.153 3.847 23 H 0.086 0.914 24 O -0.574 6.574 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.027 0.973 29 H -0.002 1.002 30 H 0.265 0.735 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.905 9.337 -19.181 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.008 4.008 5 C -0.572 4.572 6 H 0.066 0.934 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.200 1.200 13 O -0.236 6.236 14 C 0.081 3.919 15 C -0.245 4.245 16 C -0.070 4.070 17 C -0.196 4.196 18 C -0.052 4.052 19 C -0.196 4.196 20 C -0.120 4.120 21 C -0.146 4.146 22 C 0.095 3.905 23 H 0.104 0.896 24 O -0.382 6.382 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.170 0.830 33 H 0.136 0.864 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.625 8.587 -19.383 21.699 hybrid contribution 0.655 0.056 1.408 1.554 sum -3.970 8.644 -17.975 20.336 Atomic orbital electron populations 1.22309 0.93956 1.02823 1.03289 1.22604 0.94084 0.96055 0.83391 0.91633 1.19119 0.95475 0.95121 0.91134 1.21410 0.93311 1.34620 1.07854 0.93393 1.25831 1.03426 0.94741 0.95213 1.70049 1.37599 1.36598 1.12698 0.85605 0.79729 0.78795 0.77580 1.19052 1.20199 1.20048 1.86184 1.80913 1.39409 1.17112 1.19351 0.94291 0.91373 0.86852 1.21397 1.08179 0.94038 1.00855 1.20690 0.95850 1.00104 0.90349 1.21429 1.04135 0.96069 0.97988 1.20618 0.95381 0.94473 0.94682 1.19975 1.06516 1.01548 0.91578 1.21165 1.00725 1.00782 0.89288 1.22372 1.03273 0.92144 0.96782 1.21173 0.88646 0.91653 0.89030 0.89624 1.86497 1.40739 1.40040 1.70900 0.89851 0.90960 0.92569 0.95455 0.98363 0.92588 0.84455 0.82977 0.86415 0.89079 0.90103 0.88697 0.87696 0.75873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.62 9.17 71.98 0.66 -4.96 16 2 C 0.09 4.03 2.17 30.60 0.07 4.09 16 3 H 0.07 2.71 6.32 -2.39 -0.02 2.69 16 4 C 0.03 1.52 4.68 29.85 0.14 1.66 16 5 C -0.53 -31.37 8.88 25.60 0.23 -31.15 16 6 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 9 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 O -0.32 -14.54 9.55 -92.53 -0.88 -15.42 16 14 C 0.13 4.86 6.60 22.48 0.15 5.01 16 15 C -0.23 -7.13 8.24 22.34 0.18 -6.95 16 16 C -0.05 -1.30 10.03 22.29 0.22 -1.08 16 17 C -0.20 -4.84 5.81 -19.56 -0.11 -4.95 16 18 C -0.05 -1.45 6.13 -19.60 -0.12 -1.57 16 19 C -0.18 -6.20 9.98 22.40 0.22 -5.98 16 20 C -0.08 -1.74 6.77 30.52 0.21 -1.54 16 21 C -0.11 -1.76 6.81 31.51 0.21 -1.55 16 22 C 0.15 2.82 4.22 30.53 0.13 2.94 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 O -0.57 -11.22 13.35 -148.98 -1.99 -13.21 16 25 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.07 2.09 6.90 -2.39 -0.02 2.07 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.14 4.08 5.44 -2.91 -0.02 4.06 16 32 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.39 8.10 -2.39 -0.02 1.37 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.39 4.94 9.12 -74.06 -0.68 4.27 16 Total: -1.00 -70.77 315.18 2.47 -68.30 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.38 Total: 14.35 kcal Atomic # 6 Polarization: -47.85 SS G_CDS: 2.65 Total: -45.20 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.28 Total: -56.56 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -2.87 Total: -28.63 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -70.77 2.47 -68.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813641.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.435 kcal (2) G-P(sol) polarization free energy of solvation -70.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds