Wall clock time and date at job start Mon Mar 30 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.46946 * 2 1 4 4 C 1.52997 * 109.46856 * 239.99924 * 2 1 3 5 5 C 1.50707 * 109.47232 * 174.99915 * 4 2 1 6 6 H 1.08000 * 119.99534 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00392 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99827 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47228 * 89.99433 * 9 7 5 11 11 H 1.48497 * 109.47539 * 209.99619 * 9 7 5 12 12 H 1.48506 * 109.47398 * 329.99793 * 9 7 5 13 13 O 1.42897 * 109.47265 * 119.99907 * 2 1 3 14 14 C 1.35903 * 117.00014 * 275.05922 * 13 2 1 15 15 C 1.38742 * 120.09205 * 5.47193 * 14 13 2 16 16 C 1.38007 * 119.87867 * 179.97438 * 15 14 13 17 17 C 1.38544 * 120.29082 * 0.02562 * 16 15 14 18 18 C 1.38265 * 119.93674 * 359.97438 * 17 16 15 19 19 C 1.38416 * 119.90251 * 0.02562 * 18 17 16 20 20 C 1.51375 * 109.75459 * 180.02562 * 18 17 16 21 21 C 1.54337 * 105.17261 * 342.80404 * 20 18 17 22 22 C 1.51383 * 130.32180 * 180.02562 * 17 16 15 23 23 H 1.08998 * 110.38787 * 316.13660 * 22 17 16 24 24 O 1.42897 * 110.30648 * 78.24938 * 22 17 16 25 25 H 1.09003 * 109.47163 * 299.99449 * 1 2 3 26 26 H 1.08995 * 109.47645 * 60.00037 * 1 2 3 27 27 H 1.09008 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47539 * 295.00004 * 4 2 1 29 29 H 1.08999 * 109.47412 * 54.99806 * 4 2 1 30 30 H 0.96998 * 120.00361 * 180.02562 * 8 7 5 31 31 H 1.08001 * 120.06383 * 0.02562 * 15 14 13 32 32 H 1.08004 * 119.85164 * 179.97438 * 16 15 14 33 33 H 1.07998 * 119.90963 * 180.02562 * 19 18 17 34 34 H 1.09002 * 110.30399 * 223.87345 * 20 18 17 35 35 H 1.09006 * 110.29928 * 101.72674 * 20 18 17 36 36 H 1.08992 * 110.82173 * 268.13679 * 21 20 18 37 37 H 1.09001 * 110.82257 * 144.59078 * 21 20 18 38 38 H 0.96699 * 113.99893 * 295.75140 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2302 -1.1927 -2.3584 8 7 3.5763 -1.8370 -3.3001 9 14 6.0918 -1.0603 -2.4375 10 1 6.7008 -2.2128 -1.7260 11 1 6.5288 -1.0677 -3.8567 12 1 6.5260 0.2050 -1.7926 13 8 2.0064 -0.6736 1.1667 14 6 2.1114 0.0624 2.3044 15 6 1.6576 1.3732 2.3293 16 6 1.7659 2.1164 3.4871 17 6 2.3264 1.5595 4.6251 18 6 2.7794 0.2533 4.6028 19 6 2.6721 -0.4945 3.4430 20 6 3.3428 -0.1161 5.9584 21 6 3.5857 1.2290 6.6750 22 6 2.5544 2.1563 5.9975 23 1 2.9540 3.1667 5.9106 24 8 1.3346 2.1688 6.7418 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6053 -0.2618 -2.1370 30 1 4.0606 -2.2438 -4.0355 31 1 1.2196 1.8111 1.4445 32 1 1.4129 3.1370 3.5059 33 1 3.0254 -1.5149 3.4255 34 1 4.2814 -0.6582 5.8429 35 1 2.6241 -0.7172 6.5156 36 1 4.6010 1.5841 6.4987 37 1 3.3848 1.1410 7.7427 38 1 0.6485 2.7352 6.3629 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:50 Heat of formation + Delta-G solvation = -76.341764 kcal Electronic energy + Delta-G solvation = -19410.688666 eV Core-core repulsion = 16410.723427 eV Total energy + Delta-G solvation = -2999.965239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36486 -38.71660 -36.22097 -34.13494 -33.31503 -31.76348 -30.37472 -28.41707 -27.43282 -26.41851 -23.38762 -22.69829 -21.49939 -20.70922 -19.52051 -17.76512 -17.29544 -16.39791 -16.02949 -15.34843 -14.68436 -14.61282 -14.41994 -14.16094 -13.77458 -13.20298 -13.01002 -12.84354 -12.42287 -12.19495 -11.92981 -11.81352 -11.69041 -11.43987 -11.39302 -11.06959 -10.83174 -10.71826 -10.61079 -10.39916 -10.04298 -9.99127 -9.39944 -9.13113 -8.58522 -8.40399 -7.70684 -6.03448 -4.04975 1.54094 1.63355 3.31916 3.37821 3.41624 3.78164 3.89168 4.21014 4.44695 4.47787 4.69260 4.94131 5.06787 5.08759 5.33307 5.37019 5.46740 5.54908 5.59571 5.63917 5.73292 5.74739 5.86121 5.88675 5.98495 6.00667 6.18480 6.30391 6.47003 6.53606 6.64343 6.77366 6.78841 7.00197 7.47407 7.50185 7.56937 7.92974 8.12759 8.34333 8.98609 9.58564 11.07991 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.004738 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.312796 B = 5908.686559 C = 6582.003806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.063 0.937 4 C 0.025 3.975 5 C -0.515 4.515 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.289 6.289 14 C 0.164 3.836 15 C -0.219 4.219 16 C -0.056 4.056 17 C -0.200 4.200 18 C -0.042 4.042 19 C -0.156 4.156 20 C -0.080 4.080 21 C -0.113 4.113 22 C 0.153 3.847 23 H 0.060 0.940 24 O -0.561 6.561 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.029 0.971 29 H 0.039 0.961 30 H 0.261 0.739 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 7.830 16.593 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.081 0.919 4 C -0.011 4.011 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 O -0.201 6.201 14 C 0.116 3.884 15 C -0.238 4.238 16 C -0.074 4.074 17 C -0.201 4.201 18 C -0.043 4.043 19 C -0.174 4.174 20 C -0.117 4.117 21 C -0.150 4.150 22 C 0.094 3.906 23 H 0.078 0.922 24 O -0.367 6.367 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.381 7.108 16.747 18.505 hybrid contribution 0.592 0.592 -0.794 1.154 sum -2.789 7.700 15.953 17.933 Atomic orbital electron populations 1.22418 0.96964 1.02663 1.01460 1.22892 0.91848 0.97138 0.85048 0.91923 1.19274 0.96617 0.96523 0.88735 1.21117 0.91674 1.34556 1.07931 0.92630 1.24970 0.98483 0.95222 0.95617 1.69946 1.35580 1.35953 1.12120 0.86579 0.85713 0.78566 0.77090 1.20574 1.21205 1.19904 1.86281 1.79626 1.38056 1.16173 1.19051 0.91766 0.90067 0.87493 1.21255 1.08040 0.94837 0.99632 1.20305 0.97013 0.98754 0.91366 1.20897 1.06450 0.96700 0.96059 1.20204 0.96280 0.93763 0.94024 1.19827 1.05641 1.01293 0.90687 1.21047 1.01041 0.97735 0.91913 1.22285 0.97814 0.94520 1.00408 1.21028 0.85268 0.97706 0.86571 0.92242 1.86508 1.24981 1.71881 1.53284 0.93287 0.91335 0.91882 0.95260 0.94319 0.92917 0.84950 0.86626 0.85436 0.90362 0.89871 0.89729 0.89714 0.77603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.17 37.16 0.34 -2.67 16 2 C 0.09 1.79 2.17 -26.73 -0.06 1.73 16 3 H 0.06 1.27 6.32 -51.93 -0.33 0.94 16 4 C 0.03 0.64 4.68 -27.88 -0.13 0.51 16 5 C -0.51 -14.58 8.88 -34.44 -0.31 -14.89 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 13 O -0.29 -6.24 9.55 -19.44 -0.19 -6.42 16 14 C 0.16 3.06 6.60 -39.26 -0.26 2.80 16 15 C -0.22 -3.56 8.24 -39.48 -0.33 -3.88 16 16 C -0.06 -0.78 10.03 -39.55 -0.40 -1.17 16 17 C -0.20 -2.75 5.81 -104.16 -0.61 -3.35 16 18 C -0.04 -0.62 6.13 -104.21 -0.64 -1.26 16 19 C -0.16 -2.66 9.98 -39.38 -0.39 -3.05 16 20 C -0.08 -0.93 6.77 -26.85 -0.18 -1.11 16 21 C -0.11 -1.14 6.81 -25.32 -0.17 -1.31 16 22 C 0.15 1.70 4.22 -26.84 -0.11 1.59 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 O -0.56 -6.20 13.35 -35.23 -0.47 -6.67 16 25 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.13 2.04 5.44 -52.49 -0.29 1.75 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.38 2.81 9.12 45.56 0.42 3.23 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -31.84 315.19 -8.27 -40.11 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.75 Total: 1.86 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -3.34 Total: -24.51 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.66 Total: -13.09 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.84 -8.27 -40.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.231 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds