Wall clock time and date at job start Mon Mar 30 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.46946 * 2 1 4 4 C 1.52997 * 109.46856 * 239.99924 * 2 1 3 5 5 C 1.50707 * 109.47232 * 174.99915 * 4 2 1 6 6 H 1.08000 * 119.99534 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00392 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99827 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47228 * 89.99433 * 9 7 5 11 11 H 1.48497 * 109.47539 * 209.99619 * 9 7 5 12 12 H 1.48506 * 109.47398 * 329.99793 * 9 7 5 13 13 O 1.42897 * 109.47265 * 119.99907 * 2 1 3 14 14 C 1.35903 * 117.00014 * 275.05922 * 13 2 1 15 15 C 1.38742 * 120.09205 * 5.47193 * 14 13 2 16 16 C 1.38007 * 119.87867 * 179.97438 * 15 14 13 17 17 C 1.38544 * 120.29082 * 0.02562 * 16 15 14 18 18 C 1.38265 * 119.93674 * 359.97438 * 17 16 15 19 19 C 1.38416 * 119.90251 * 0.02562 * 18 17 16 20 20 C 1.51375 * 109.75459 * 180.02562 * 18 17 16 21 21 C 1.54337 * 105.17261 * 342.80404 * 20 18 17 22 22 C 1.51383 * 130.32180 * 180.02562 * 17 16 15 23 23 H 1.08998 * 110.38787 * 316.13660 * 22 17 16 24 24 O 1.42897 * 110.30648 * 78.24938 * 22 17 16 25 25 H 1.09003 * 109.47163 * 299.99449 * 1 2 3 26 26 H 1.08995 * 109.47645 * 60.00037 * 1 2 3 27 27 H 1.09008 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47539 * 295.00004 * 4 2 1 29 29 H 1.08999 * 109.47412 * 54.99806 * 4 2 1 30 30 H 0.96998 * 120.00361 * 180.02562 * 8 7 5 31 31 H 1.08001 * 120.06383 * 0.02562 * 15 14 13 32 32 H 1.08004 * 119.85164 * 179.97438 * 16 15 14 33 33 H 1.07998 * 119.90963 * 180.02562 * 19 18 17 34 34 H 1.09002 * 110.30399 * 223.87345 * 20 18 17 35 35 H 1.09006 * 110.29928 * 101.72674 * 20 18 17 36 36 H 1.08992 * 110.82173 * 268.13679 * 21 20 18 37 37 H 1.09001 * 110.82257 * 144.59078 * 21 20 18 38 38 H 0.96699 * 113.99893 * 295.75140 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2302 -1.1927 -2.3584 8 7 3.5763 -1.8370 -3.3001 9 14 6.0918 -1.0603 -2.4375 10 1 6.7008 -2.2128 -1.7260 11 1 6.5288 -1.0677 -3.8567 12 1 6.5260 0.2050 -1.7926 13 8 2.0064 -0.6736 1.1667 14 6 2.1114 0.0624 2.3044 15 6 1.6576 1.3732 2.3293 16 6 1.7659 2.1164 3.4871 17 6 2.3264 1.5595 4.6251 18 6 2.7794 0.2533 4.6028 19 6 2.6721 -0.4945 3.4430 20 6 3.3428 -0.1161 5.9584 21 6 3.5857 1.2290 6.6750 22 6 2.5544 2.1563 5.9975 23 1 2.9540 3.1667 5.9106 24 8 1.3346 2.1688 6.7418 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6053 -0.2618 -2.1370 30 1 4.0606 -2.2438 -4.0355 31 1 1.2196 1.8111 1.4445 32 1 1.4129 3.1370 3.5059 33 1 3.0254 -1.5149 3.4255 34 1 4.2814 -0.6582 5.8429 35 1 2.6241 -0.7172 6.5156 36 1 4.6010 1.5841 6.4987 37 1 3.3848 1.1410 7.7427 38 1 0.6485 2.7352 6.3629 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:50 Heat of formation + Delta-G solvation = -96.758607 kcal Electronic energy + Delta-G solvation = -19411.574006 eV Core-core repulsion = 16410.723427 eV Total energy + Delta-G solvation = -3000.850580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54520 -40.00594 -37.28696 -35.57358 -34.84060 -33.50166 -31.61049 -29.66150 -29.19027 -27.40619 -25.31959 -23.84199 -22.97777 -21.62701 -20.95294 -18.86887 -18.52930 -18.45923 -17.20396 -16.78365 -16.28619 -16.04396 -15.70349 -15.23540 -14.72756 -14.67125 -14.25741 -14.20097 -13.92884 -13.65821 -13.37598 -13.27955 -13.05174 -12.92735 -12.69964 -12.60297 -12.36792 -12.12238 -11.83506 -11.79270 -11.57064 -11.30097 -11.09041 -10.89833 -10.61505 -9.76125 -9.00152 -8.23667 -6.33017 0.35517 0.42700 1.36273 1.37819 1.48523 2.37358 2.38093 2.72207 3.10698 3.37447 3.53340 3.76882 3.90051 4.04445 4.05896 4.19533 4.20377 4.32939 4.41447 4.42762 4.53781 4.69648 4.78080 4.80813 4.96454 4.98452 5.01603 5.14946 5.19776 5.23057 5.30446 5.34478 5.46290 5.48765 5.63520 5.73343 5.88760 6.16024 6.67057 6.78695 6.86805 7.34675 8.88113 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.004738 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.312796 B = 5908.686559 C = 6582.003806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.533 4.533 6 H 0.049 0.951 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.266 1.266 13 O -0.322 6.322 14 C 0.128 3.872 15 C -0.226 4.226 16 C -0.052 4.052 17 C -0.195 4.195 18 C -0.051 4.051 19 C -0.177 4.177 20 C -0.082 4.082 21 C -0.110 4.110 22 C 0.155 3.845 23 H 0.083 0.917 24 O -0.571 6.571 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.055 0.945 28 H -0.003 1.003 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.138 0.862 32 H 0.152 0.848 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 9.899 18.684 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.571 4.571 6 H 0.067 0.933 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.201 1.201 12 H -0.191 1.191 13 O -0.236 6.236 14 C 0.081 3.919 15 C -0.245 4.245 16 C -0.070 4.070 17 C -0.196 4.196 18 C -0.052 4.052 19 C -0.196 4.196 20 C -0.119 4.119 21 C -0.147 4.147 22 C 0.096 3.904 23 H 0.101 0.899 24 O -0.379 6.379 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.016 0.984 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.170 0.830 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.824 9.194 18.854 21.166 hybrid contribution 0.386 -0.038 -1.340 1.395 sum -2.438 9.156 17.514 19.913 Atomic orbital electron populations 1.22312 0.94049 1.02786 1.03264 1.22600 0.94021 0.96094 0.83398 0.91558 1.19126 0.95560 0.95093 0.91115 1.21440 0.93256 1.34561 1.07816 0.93275 1.25847 1.03502 0.94757 0.95197 1.70058 1.37552 1.36692 1.12734 0.85529 0.79694 0.78783 0.77561 1.20153 1.20111 1.19070 1.86182 1.80908 1.39354 1.17159 1.19349 0.94224 0.91380 0.86908 1.21395 1.08133 0.94013 1.00940 1.20688 0.95884 1.00083 0.90345 1.21416 1.04533 0.96275 0.97388 1.20619 0.95892 0.94231 0.94409 1.19976 1.06553 1.01487 0.91576 1.21159 1.01377 0.99109 0.90238 1.22368 0.98477 0.93070 1.00817 1.21127 0.85655 0.98843 0.84762 0.89943 1.86491 1.25493 1.72590 1.53359 0.91037 0.89820 0.92625 0.98411 0.95473 0.92612 0.84462 0.82987 0.86372 0.89454 0.89537 0.88182 0.88460 0.75824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.66 9.17 71.98 0.66 -5.00 16 2 C 0.09 4.03 2.17 30.59 0.07 4.10 16 3 H 0.07 2.73 6.32 -2.39 -0.02 2.71 16 4 C 0.03 1.49 4.68 29.85 0.14 1.63 16 5 C -0.53 -31.14 8.88 25.60 0.23 -30.91 16 6 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 7 C 0.00 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 9 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 O -0.32 -14.51 9.55 -92.46 -0.88 -15.39 16 14 C 0.13 4.86 6.60 22.48 0.15 5.01 16 15 C -0.23 -7.14 8.24 22.34 0.18 -6.96 16 16 C -0.05 -1.31 10.03 22.29 0.22 -1.08 16 17 C -0.20 -4.84 5.81 -19.57 -0.11 -4.95 16 18 C -0.05 -1.45 6.13 -19.60 -0.12 -1.57 16 19 C -0.18 -6.18 9.98 22.40 0.22 -5.96 16 20 C -0.08 -1.72 6.77 30.52 0.21 -1.52 16 21 C -0.11 -1.84 6.81 31.51 0.21 -1.62 16 22 C 0.15 2.85 4.22 30.52 0.13 2.98 16 23 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 24 O -0.57 -10.51 13.35 -148.98 -1.99 -12.50 16 25 H 0.07 2.09 6.91 -2.39 -0.02 2.07 16 26 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.14 4.08 5.44 -2.91 -0.02 4.06 16 32 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.42 8.10 -2.39 -0.02 1.40 16 38 H 0.39 4.37 9.12 -74.06 -0.68 3.69 16 Total: -1.00 -70.31 315.19 2.47 -67.84 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.38 Total: 14.23 kcal Atomic # 6 Polarization: -47.76 SS G_CDS: 2.65 Total: -45.11 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.28 Total: -56.48 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -2.87 Total: -27.90 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.31 2.47 -67.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.919 kcal (2) G-P(sol) polarization free energy of solvation -70.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds