Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09009 * 109.47047 * 2 1 4 4 C 1.52997 * 109.47260 * 120.00026 * 2 1 3 5 5 C 1.50700 * 109.47066 * 185.00037 * 4 2 1 6 6 H 1.08000 * 120.00172 * 0.02562 * 5 4 2 7 7 C 1.37883 * 120.00131 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99733 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00131 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47198 * 60.00274 * 9 7 5 11 11 H 1.48500 * 109.47079 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47353 * 299.99870 * 9 7 5 13 13 O 1.42899 * 109.47128 * 240.00426 * 2 1 3 14 14 C 1.35892 * 117.00358 * 84.75648 * 13 2 1 15 15 C 1.38645 * 119.95131 * 354.58961 * 14 13 2 16 16 C 1.38122 * 119.87227 * 179.97438 * 15 14 13 17 17 C 1.38166 * 119.99744 * 0.02562 * 16 15 14 18 18 C 1.38501 * 120.33589 * 0.02562 * 17 16 15 19 19 C 1.38169 * 119.87967 * 359.97191 * 18 17 16 20 20 C 1.51366 * 109.77702 * 180.02562 * 19 18 17 21 21 C 1.54343 * 105.25040 * 342.76942 * 20 19 18 22 22 C 1.51371 * 130.36451 * 179.97438 * 18 17 16 23 23 H 1.09000 * 110.30761 * 316.20190 * 22 18 17 24 24 O 1.42902 * 110.30537 * 78.26090 * 22 18 17 25 25 H 1.09002 * 109.47596 * 59.99861 * 1 2 3 26 26 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47498 * 299.99789 * 1 2 3 28 28 H 1.09004 * 109.47302 * 305.00110 * 4 2 1 29 29 H 1.08997 * 109.47384 * 65.00059 * 4 2 1 30 30 H 0.96999 * 120.00121 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.05969 * 0.02569 * 15 14 13 32 32 H 1.08005 * 119.99885 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.83351 * 179.97438 * 17 16 15 34 34 H 1.08994 * 110.30012 * 101.74280 * 20 19 18 35 35 H 1.09000 * 110.29865 * 223.79543 * 20 19 18 36 36 H 1.09004 * 110.82515 * 144.61237 * 21 20 19 37 37 H 1.09003 * 110.82337 * 268.16230 * 21 20 19 38 38 H 0.96703 * 113.99617 * 298.54528 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0789 -0.0854 0.5395 7 6 4.2305 -1.1935 2.3577 8 7 3.5766 -1.8387 3.2989 9 14 6.0921 -1.0623 2.4360 10 1 6.4854 0.3684 2.4957 11 1 6.5872 -1.7622 3.6485 12 1 6.6838 -1.6882 1.2263 13 8 2.0063 -0.6735 -1.1668 14 6 2.1076 0.0614 -2.3053 15 6 1.6509 1.3703 -2.3273 16 6 1.7552 2.1160 -3.4852 17 6 2.3133 1.5571 -4.6188 18 6 2.7700 0.2496 -4.6020 19 6 2.6678 -0.5003 -3.4460 20 6 3.2326 -1.8847 -3.6821 21 6 3.2883 -2.0443 -5.2162 22 6 3.4100 -0.5794 -5.6949 23 1 2.8768 -0.4417 -6.6356 24 8 4.7849 -0.2214 -5.8482 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 4.0609 -2.2454 4.0343 31 1 1.2152 1.8061 -1.4404 32 1 1.3997 3.1357 -3.5047 33 1 2.3932 2.1424 -5.5229 34 1 4.2333 -1.9623 -3.2571 35 1 2.5778 -2.6395 -3.2467 36 1 4.1614 -2.6249 -5.5140 37 1 2.3721 -2.4999 -5.5919 38 1 4.9249 0.7001 -6.1058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = -74.986901 kcal Electronic energy + Delta-G solvation = -19777.600756 eV Core-core repulsion = 16777.694269 eV Total energy + Delta-G solvation = -2999.906488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38684 -38.45140 -36.26618 -34.21347 -33.45975 -31.64166 -29.69574 -28.72334 -27.49568 -26.35528 -23.48241 -22.38689 -21.55663 -20.59338 -19.55469 -17.79646 -17.12103 -16.34838 -15.88617 -15.35125 -14.77436 -14.54562 -14.47651 -13.85846 -13.81691 -13.44011 -12.85899 -12.83108 -12.18299 -12.01872 -11.87011 -11.75395 -11.48413 -11.32758 -11.25176 -11.01108 -10.82021 -10.70416 -10.67551 -10.41201 -10.10420 -9.94892 -9.38154 -9.12497 -8.51089 -8.38130 -7.66258 -6.01479 -4.02797 1.46098 1.72334 3.35223 3.38767 3.43155 3.85477 3.96184 4.27116 4.46766 4.47545 4.80117 5.01282 5.13719 5.18680 5.35409 5.35918 5.45346 5.58709 5.68116 5.73693 5.79022 5.88970 5.92531 5.98917 6.05537 6.22695 6.25486 6.41341 6.52633 6.59235 6.65644 6.71292 6.78981 7.03743 7.49090 7.56648 7.58630 7.94979 8.15252 8.36631 9.00558 9.60584 11.09901 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.006040 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.319933 B = 4634.650992 C = 5402.032372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 H 0.062 0.938 4 C 0.026 3.974 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 O -0.288 6.288 14 C 0.160 3.840 15 C -0.208 4.208 16 C -0.086 4.086 17 C -0.152 4.152 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.071 4.071 21 C -0.114 4.114 22 C 0.148 3.852 23 H 0.063 0.937 24 O -0.555 6.555 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 4.995 -16.501 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.080 0.920 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 O -0.200 6.200 14 C 0.113 3.887 15 C -0.227 4.227 16 C -0.104 4.104 17 C -0.170 4.170 18 C -0.111 4.111 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.151 4.151 22 C 0.090 3.910 23 H 0.081 0.919 24 O -0.361 6.361 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.157 4.043 -16.105 17.117 hybrid contribution 0.766 1.024 0.183 1.292 sum -3.391 5.067 -15.921 17.049 Atomic orbital electron populations 1.22415 0.97037 1.02611 1.01418 1.22880 0.91790 0.97127 0.85226 0.92029 1.19255 0.96575 0.96480 0.88718 1.21079 0.91676 1.34547 1.07938 0.92705 1.24966 0.98446 0.95208 0.95644 1.69939 1.35667 1.35904 1.12126 0.86651 0.85712 0.78239 0.77432 1.20280 1.21242 1.20107 1.86290 1.79684 1.38030 1.16035 1.18822 0.92848 0.90156 0.86874 1.21319 1.07007 0.94365 0.99975 1.20750 0.98281 0.99080 0.92275 1.20336 1.03679 0.94380 0.98647 1.20964 0.99416 0.94506 0.96184 1.19784 1.02327 0.97821 0.91891 1.20878 1.01688 0.93351 0.94914 1.22367 1.02737 0.94113 0.95878 1.21206 0.81688 0.93741 0.94409 0.91935 1.86566 1.24401 1.32989 1.92104 0.93326 0.91914 0.91379 0.94403 0.95291 0.92886 0.84927 0.86057 0.86809 0.89896 0.90315 0.89595 0.89835 0.77612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 9.16 37.15 0.34 -2.69 16 2 C 0.09 1.79 2.17 -26.74 -0.06 1.73 16 3 H 0.06 1.26 6.32 -51.92 -0.33 0.94 16 4 C 0.03 0.68 4.68 -27.88 -0.13 0.55 16 5 C -0.51 -14.70 8.88 -34.44 -0.31 -15.01 16 6 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 O -0.29 -6.26 9.50 -19.40 -0.18 -6.44 16 14 C 0.16 3.04 6.60 -39.17 -0.26 2.78 16 15 C -0.21 -3.42 8.23 -39.47 -0.32 -3.74 16 16 C -0.09 -1.18 10.04 -39.65 -0.40 -1.58 16 17 C -0.15 -2.00 10.04 -39.51 -0.40 -2.39 16 18 C -0.11 -1.60 5.80 -104.22 -0.60 -2.20 16 19 C -0.12 -2.03 6.11 -104.06 -0.64 -2.67 16 20 C -0.07 -1.13 6.70 -26.85 -0.18 -1.31 16 21 C -0.11 -1.40 6.82 -25.19 -0.17 -1.57 16 22 C 0.15 1.82 4.23 -26.72 -0.11 1.71 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 O -0.56 -6.98 13.36 -35.23 -0.47 -7.45 16 25 H 0.05 0.74 6.89 -51.93 -0.36 0.38 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.13 2.07 5.41 -52.49 -0.28 1.79 16 32 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.38 3.24 9.10 45.56 0.41 3.66 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -32.16 315.05 -8.27 -40.43 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.74 Total: 2.53 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -3.33 Total: -24.81 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.66 Total: -13.89 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.16 -8.27 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.552 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds