Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09009 * 109.47047 * 2 1 4 4 C 1.52997 * 109.47260 * 120.00026 * 2 1 3 5 5 C 1.50700 * 109.47066 * 185.00037 * 4 2 1 6 6 H 1.08000 * 120.00172 * 0.02562 * 5 4 2 7 7 C 1.37883 * 120.00131 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99733 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00131 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47198 * 60.00274 * 9 7 5 11 11 H 1.48500 * 109.47079 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47353 * 299.99870 * 9 7 5 13 13 O 1.42899 * 109.47128 * 240.00426 * 2 1 3 14 14 C 1.35892 * 117.00358 * 84.75648 * 13 2 1 15 15 C 1.38645 * 119.95131 * 354.58961 * 14 13 2 16 16 C 1.38122 * 119.87227 * 179.97438 * 15 14 13 17 17 C 1.38166 * 119.99744 * 0.02562 * 16 15 14 18 18 C 1.38501 * 120.33589 * 0.02562 * 17 16 15 19 19 C 1.38169 * 119.87967 * 359.97191 * 18 17 16 20 20 C 1.51366 * 109.77702 * 180.02562 * 19 18 17 21 21 C 1.54343 * 105.25040 * 342.76942 * 20 19 18 22 22 C 1.51371 * 130.36451 * 179.97438 * 18 17 16 23 23 H 1.09000 * 110.30761 * 316.20190 * 22 18 17 24 24 O 1.42902 * 110.30537 * 78.26090 * 22 18 17 25 25 H 1.09002 * 109.47596 * 59.99861 * 1 2 3 26 26 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47498 * 299.99789 * 1 2 3 28 28 H 1.09004 * 109.47302 * 305.00110 * 4 2 1 29 29 H 1.08997 * 109.47384 * 65.00059 * 4 2 1 30 30 H 0.96999 * 120.00121 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.05969 * 0.02569 * 15 14 13 32 32 H 1.08005 * 119.99885 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.83351 * 179.97438 * 17 16 15 34 34 H 1.08994 * 110.30012 * 101.74280 * 20 19 18 35 35 H 1.09000 * 110.29865 * 223.79543 * 20 19 18 36 36 H 1.09004 * 110.82515 * 144.61237 * 21 20 19 37 37 H 1.09003 * 110.82337 * 268.16230 * 21 20 19 38 38 H 0.96703 * 113.99617 * 298.54528 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0789 -0.0854 0.5395 7 6 4.2305 -1.1935 2.3577 8 7 3.5766 -1.8387 3.2989 9 14 6.0921 -1.0623 2.4360 10 1 6.4854 0.3684 2.4957 11 1 6.5872 -1.7622 3.6485 12 1 6.6838 -1.6882 1.2263 13 8 2.0063 -0.6735 -1.1668 14 6 2.1076 0.0614 -2.3053 15 6 1.6509 1.3703 -2.3273 16 6 1.7552 2.1160 -3.4852 17 6 2.3133 1.5571 -4.6188 18 6 2.7700 0.2496 -4.6020 19 6 2.6678 -0.5003 -3.4460 20 6 3.2326 -1.8847 -3.6821 21 6 3.2883 -2.0443 -5.2162 22 6 3.4100 -0.5794 -5.6949 23 1 2.8768 -0.4417 -6.6356 24 8 4.7849 -0.2214 -5.8482 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 4.0609 -2.2454 4.0343 31 1 1.2152 1.8061 -1.4404 32 1 1.3997 3.1357 -3.5047 33 1 2.3932 2.1424 -5.5229 34 1 4.2333 -1.9623 -3.2571 35 1 2.5778 -2.6395 -3.2467 36 1 4.1614 -2.6249 -5.5140 37 1 2.3721 -2.4999 -5.5919 38 1 4.9249 0.7001 -6.1058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = -96.008593 kcal Electronic energy + Delta-G solvation = -19778.512325 eV Core-core repulsion = 16777.694269 eV Total energy + Delta-G solvation = -3000.818057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.60071 -39.78387 -37.38940 -35.47063 -35.26910 -33.46224 -30.90436 -29.91137 -29.35989 -27.47598 -25.37466 -23.78343 -22.79540 -21.78286 -20.97171 -18.97639 -18.59553 -18.20052 -17.23883 -16.59183 -16.44495 -16.11686 -15.63763 -15.21100 -15.04002 -14.55754 -14.42554 -14.10899 -13.81442 -13.62492 -13.44564 -13.20535 -12.92166 -12.83395 -12.68942 -12.47672 -12.37088 -12.15350 -11.97617 -11.79231 -11.74116 -11.31918 -11.08911 -10.97779 -10.62211 -9.66659 -8.97067 -8.24898 -6.33907 0.29888 0.53137 1.33997 1.37063 1.45098 2.36481 2.46628 2.76075 3.09388 3.33059 3.44845 3.75314 3.97114 4.04376 4.07042 4.12571 4.20503 4.33388 4.38896 4.44081 4.57568 4.71540 4.76864 4.84117 4.93282 4.97607 5.00299 5.14017 5.14318 5.21985 5.32631 5.42738 5.48329 5.51972 5.59246 5.72205 5.95089 6.15374 6.69569 6.77667 6.85779 7.33392 8.86641 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.006040 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.319933 B = 4634.650992 C = 5402.032372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 H 0.063 0.937 4 C 0.030 3.970 5 C -0.533 4.533 6 H 0.046 0.954 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.276 1.276 13 O -0.322 6.322 14 C 0.119 3.881 15 C -0.218 4.218 16 C -0.083 4.083 17 C -0.140 4.140 18 C -0.108 4.108 19 C -0.150 4.150 20 C -0.077 4.077 21 C -0.108 4.108 22 C 0.152 3.848 23 H 0.099 0.901 24 O -0.572 6.572 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.026 0.974 29 H -0.003 1.003 30 H 0.265 0.735 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 6.888 -19.167 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.571 4.571 6 H 0.064 0.936 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.781 3.219 10 H -0.191 1.191 11 H -0.201 1.201 12 H -0.201 1.201 13 O -0.236 6.236 14 C 0.073 3.927 15 C -0.237 4.237 16 C -0.100 4.100 17 C -0.158 4.158 18 C -0.109 4.109 19 C -0.150 4.150 20 C -0.114 4.114 21 C -0.145 4.145 22 C 0.094 3.906 23 H 0.117 0.883 24 O -0.380 6.380 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.044 0.956 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -3.948 5.960 -18.788 20.102 hybrid contribution 0.704 0.473 0.936 1.263 sum -3.244 6.433 -17.852 19.251 Atomic orbital electron populations 1.22298 0.94039 1.02750 1.03201 1.22569 0.94021 0.95955 0.83653 0.91912 1.19100 0.95419 0.95063 0.91131 1.21389 0.93321 1.34573 1.07772 0.93572 1.25825 1.03376 0.94761 0.95241 1.70048 1.37568 1.36577 1.12693 0.85629 0.79821 0.78810 0.77613 1.19067 1.20064 1.20095 1.86191 1.81009 1.39329 1.17034 1.19237 0.95568 0.91528 0.86368 1.21489 1.07183 0.93643 1.01382 1.21207 0.97219 1.00339 0.91277 1.20848 1.01195 0.93860 0.99857 1.21395 0.98703 0.95092 0.95685 1.20152 1.03245 0.98919 0.92720 1.20906 0.99733 0.93014 0.97789 1.22411 1.04140 0.95173 0.92775 1.21284 0.81769 0.92613 0.94979 0.88325 1.86543 1.24553 1.34687 1.92212 0.91030 0.92607 0.89940 0.95573 0.98416 0.92579 0.84776 0.82505 0.82564 0.92557 0.91645 0.89092 0.87599 0.75609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 9.16 71.98 0.66 -5.04 16 2 C 0.09 4.08 2.17 30.59 0.07 4.15 16 3 H 0.06 2.66 6.32 -2.38 -0.02 2.64 16 4 C 0.03 1.61 4.68 29.85 0.14 1.75 16 5 C -0.53 -31.69 8.88 25.60 0.23 -31.47 16 6 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 9 Si 0.96 46.26 29.54 68.60 2.03 48.29 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 O -0.32 -14.72 9.50 -92.33 -0.88 -15.59 16 14 C 0.12 4.59 6.60 22.54 0.15 4.74 16 15 C -0.22 -6.96 8.23 22.34 0.18 -6.77 16 16 C -0.08 -2.00 10.04 22.23 0.22 -1.78 16 17 C -0.14 -3.08 10.04 22.32 0.22 -2.86 16 18 C -0.11 -2.87 5.80 -19.60 -0.11 -2.99 16 19 C -0.15 -5.20 6.11 -19.50 -0.12 -5.32 16 20 C -0.08 -2.53 6.70 30.52 0.20 -2.32 16 21 C -0.11 -2.50 6.82 31.59 0.22 -2.28 16 22 C 0.15 3.25 4.23 30.60 0.13 3.38 16 23 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 24 O -0.57 -12.74 13.36 -148.98 -1.99 -14.73 16 25 H 0.07 2.12 6.89 -2.39 -0.02 2.10 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.13 4.09 5.41 -2.91 -0.02 4.07 16 32 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.09 2.00 8.11 -2.38 -0.02 1.98 16 37 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.39 5.38 9.10 -74.06 -0.67 4.71 16 Total: -1.00 -72.70 315.05 2.48 -70.22 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.38 Total: 14.78 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 2.65 Total: -45.99 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.28 Total: -56.97 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -2.87 Total: -30.33 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -72.70 2.48 -70.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.792 kcal (2) G-P(sol) polarization free energy of solvation -72.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds