Wall clock time and date at job start Mon Mar 30 2020 06:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47034 * 2 1 4 4 C 1.52999 * 109.47298 * 240.00218 * 2 1 3 5 5 C 1.50700 * 109.47483 * 175.00291 * 4 2 1 6 6 H 1.08009 * 119.99590 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00540 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99949 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00194 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47319 * 59.99977 * 9 7 5 11 11 H 1.48507 * 109.47183 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46940 * 299.99476 * 9 7 5 13 13 O 1.42900 * 109.47084 * 120.00146 * 2 1 3 14 14 C 1.35903 * 117.00013 * 275.08457 * 13 2 1 15 15 C 1.38651 * 119.94637 * 5.47176 * 14 13 2 16 16 C 1.38125 * 119.86831 * 179.97438 * 15 14 13 17 17 C 1.38173 * 119.99711 * 359.97438 * 16 15 14 18 18 C 1.38311 * 120.40018 * 0.02779 * 17 16 15 19 19 C 1.38403 * 119.85030 * 359.94648 * 18 17 16 20 20 C 1.51357 * 109.81208 * 180.02562 * 19 18 17 21 21 C 1.54343 * 105.16880 * 342.84134 * 20 19 18 22 22 C 1.51380 * 130.52647 * 180.02562 * 18 17 16 23 23 H 1.09007 * 110.30109 * 316.12735 * 22 18 17 24 24 O 1.42902 * 110.30448 * 78.17703 * 22 18 17 25 25 H 1.08996 * 109.47701 * 300.00298 * 1 2 3 26 26 H 1.09005 * 109.46898 * 60.00109 * 1 2 3 27 27 H 1.09003 * 109.47186 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46872 * 294.99715 * 4 2 1 29 29 H 1.09000 * 109.47396 * 54.99646 * 4 2 1 30 30 H 0.97000 * 120.00184 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.06833 * 359.96388 * 15 14 13 32 32 H 1.07997 * 120.00140 * 179.97438 * 16 15 14 33 33 H 1.08004 * 119.83251 * 180.02562 * 17 16 15 34 34 H 1.09007 * 110.30396 * 223.91913 * 20 19 18 35 35 H 1.09001 * 110.38909 * 101.81059 * 20 19 18 36 36 H 1.09004 * 110.82542 * 268.11408 * 21 20 19 37 37 H 1.08998 * 110.82669 * 144.56046 * 21 20 19 38 38 H 0.96702 * 113.99807 * 297.22865 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0855 -0.5395 7 6 4.2304 -1.1926 -2.3583 8 7 3.5764 -1.8368 -3.3001 9 14 6.0920 -1.0602 -2.4372 10 1 6.6845 -1.6863 -1.2281 11 1 6.5871 -1.7603 -3.6497 12 1 6.4844 0.3708 -2.4965 13 8 2.0063 -0.6737 1.1668 14 6 2.1108 0.0621 2.3046 15 6 1.6558 1.3717 2.3262 16 6 1.7623 2.1179 3.4837 17 6 2.3209 1.5587 4.6171 18 6 2.7765 0.2529 4.6016 19 6 2.6718 -0.4996 3.4448 20 6 3.2351 -1.8844 3.6809 21 6 4.0875 -1.7608 4.9616 22 6 3.4170 -0.5784 5.6927 23 1 4.1641 0.0090 6.2264 24 8 2.4222 -1.0564 6.6004 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 4.0608 -2.2429 -4.0359 31 1 1.2192 1.8076 1.4398 32 1 1.4091 3.1382 3.5028 33 1 2.4025 2.1445 5.5208 34 1 3.8583 -2.1878 2.8396 35 1 2.4284 -2.6020 3.8312 36 1 5.1237 -1.5273 4.7165 37 1 4.0250 -2.6709 5.5582 38 1 1.9522 -0.3560 7.0734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:07 Heat of formation + Delta-G solvation = -95.916489 kcal Electronic energy + Delta-G solvation = -19768.066648 eV Core-core repulsion = 16767.252585 eV Total energy + Delta-G solvation = -3000.814063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59686 -39.78406 -37.38984 -35.46299 -35.26359 -33.45891 -30.91218 -29.90937 -29.35947 -27.48099 -25.37063 -23.77925 -22.80093 -21.78338 -20.96419 -18.99445 -18.57071 -18.20196 -17.23176 -16.58997 -16.43486 -16.14252 -15.50135 -15.20856 -15.20489 -14.55244 -14.40312 -13.99118 -13.81035 -13.65600 -13.46885 -13.24480 -13.03424 -12.69491 -12.67360 -12.46667 -12.32287 -12.17359 -11.98700 -11.88076 -11.67527 -11.31403 -11.08778 -10.98027 -10.61057 -9.65918 -8.97202 -8.23503 -6.32870 0.29698 0.53624 1.35547 1.38669 1.46647 2.37793 2.47478 2.75611 3.10853 3.32042 3.45355 3.74679 3.96843 4.03403 4.07121 4.13156 4.19735 4.33515 4.39029 4.44205 4.58099 4.69906 4.75863 4.84889 4.92726 4.97562 5.00103 5.13678 5.15450 5.20196 5.33195 5.42933 5.48542 5.51968 5.59213 5.73016 5.95234 6.16177 6.69845 6.78605 6.86730 7.34554 8.88108 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.005811 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.863480 B = 4817.144489 C = 5518.693319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 H 0.065 0.935 4 C 0.029 3.971 5 C -0.532 4.532 6 H 0.048 0.952 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.265 1.265 13 O -0.322 6.322 14 C 0.119 3.881 15 C -0.218 4.218 16 C -0.083 4.083 17 C -0.139 4.139 18 C -0.108 4.108 19 C -0.150 4.150 20 C -0.076 4.076 21 C -0.111 4.111 22 C 0.154 3.846 23 H 0.095 0.905 24 O -0.568 6.568 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.053 0.947 28 H -0.004 1.004 29 H 0.025 0.975 30 H 0.265 0.735 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 7.491 18.733 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.007 4.007 5 C -0.569 4.569 6 H 0.066 0.934 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.236 6.236 14 C 0.073 3.927 15 C -0.237 4.237 16 C -0.100 4.100 17 C -0.157 4.157 18 C -0.108 4.108 19 C -0.151 4.151 20 C -0.114 4.114 21 C -0.148 4.148 22 C 0.096 3.904 23 H 0.113 0.887 24 O -0.376 6.376 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.015 0.985 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.117 6.609 18.304 19.575 hybrid contribution 0.407 0.363 -0.852 1.012 sum -1.710 6.972 17.452 18.870 Atomic orbital electron populations 1.22304 0.94230 1.02665 1.03163 1.22568 0.93903 0.96028 0.83675 0.91754 1.19103 0.95582 0.94984 0.91073 1.21384 0.93194 1.34579 1.07793 0.93354 1.25850 1.03510 0.94743 0.95206 1.70057 1.37630 1.36677 1.12674 0.85596 0.79643 0.78803 0.77632 1.19839 1.20293 1.19021 1.86198 1.81002 1.39272 1.17090 1.19235 0.95595 0.91513 0.86374 1.21492 1.07079 0.93678 1.01407 1.21207 0.97104 1.00391 0.91334 1.20797 1.01219 0.93828 0.99880 1.21399 0.99433 0.94692 0.95325 1.20213 1.03639 0.98470 0.92783 1.20899 0.98912 0.93082 0.98473 1.22358 0.98895 0.99181 0.94342 1.21157 0.89138 0.92969 0.87140 0.88729 1.86530 1.54588 1.38577 1.57924 0.91130 0.89903 0.92744 0.98541 0.95639 0.92624 0.84771 0.82496 0.82581 0.92514 0.91304 0.88514 0.88654 0.75530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.80 9.17 71.98 0.66 -5.14 16 2 C 0.09 4.09 2.17 30.59 0.07 4.15 16 3 H 0.06 2.71 6.31 -2.39 -0.02 2.69 16 4 C 0.03 1.59 4.68 29.85 0.14 1.73 16 5 C -0.53 -31.28 8.88 25.60 0.23 -31.05 16 6 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 7 C 0.00 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -57.11 13.29 21.44 0.28 -56.83 16 9 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 O -0.32 -14.72 9.50 -92.46 -0.88 -15.60 16 14 C 0.12 4.58 6.60 22.54 0.15 4.73 16 15 C -0.22 -6.94 8.23 22.34 0.18 -6.76 16 16 C -0.08 -2.00 10.04 22.23 0.22 -1.78 16 17 C -0.14 -3.08 10.02 22.27 0.22 -2.86 16 18 C -0.11 -2.87 5.81 -19.59 -0.11 -2.98 16 19 C -0.15 -5.23 6.11 -19.45 -0.12 -5.35 16 20 C -0.08 -2.50 6.71 30.51 0.20 -2.30 16 21 C -0.11 -2.66 6.81 31.50 0.21 -2.44 16 22 C 0.15 3.31 4.22 30.52 0.13 3.44 16 23 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 24 O -0.57 -11.70 13.36 -148.98 -1.99 -13.69 16 25 H 0.07 2.13 6.90 -2.39 -0.02 2.11 16 26 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 29 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 31 H 0.13 4.09 5.41 -2.91 -0.02 4.07 16 32 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 34 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.09 2.08 8.10 -2.39 -0.02 2.06 16 38 H 0.39 4.62 9.11 -74.06 -0.67 3.95 16 Total: -1.00 -71.78 315.06 2.48 -69.30 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.38 Total: 15.10 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 2.65 Total: -45.86 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.28 Total: -56.83 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -2.87 Total: -29.29 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.78 2.48 -69.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.618 kcal (2) G-P(sol) polarization free energy of solvation -71.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds