Wall clock time and date at job start Mon Mar 30 2020 07:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 119.97306 * 2 1 4 4 C 1.38713 * 119.94289 * 179.97438 * 3 2 1 5 5 O 1.35897 * 120.05408 * 179.97438 * 4 3 2 6 6 C 1.42891 * 117.00151 * 185.49993 * 5 4 3 7 7 H 1.09002 * 109.47676 * 37.20597 * 6 5 4 8 8 C 1.53004 * 109.46790 * 277.21120 * 6 5 4 9 9 C 1.53003 * 109.47377 * 157.21224 * 6 5 4 10 10 C 1.50699 * 109.46960 * 294.99816 * 9 6 5 11 11 H 1.07995 * 119.99874 * 359.97438 * 10 9 6 12 12 C 1.37882 * 119.99726 * 180.02562 * 10 9 6 13 13 N 1.31520 * 119.99853 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99804 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47013 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46758 * 119.99796 * 14 12 10 17 17 H 1.48497 * 109.46958 * 240.00055 * 14 12 10 18 18 C 1.38751 * 119.88841 * 359.97438 * 4 3 2 19 19 C 1.38118 * 119.94778 * 0.02562 * 18 4 3 20 20 C 1.38250 * 119.97435 * 180.24616 * 2 1 3 21 21 C 1.50694 * 119.94059 * 0.05029 * 20 2 1 22 22 C 1.52999 * 109.47286 * 120.74159 * 21 20 2 23 23 C 1.53007 * 109.46825 * 240.73939 * 21 20 2 24 24 H 1.08996 * 109.47367 * 94.15097 * 1 2 3 25 25 H 1.09002 * 109.47230 * 214.15167 * 1 2 3 26 26 H 1.09002 * 109.47331 * 334.15116 * 1 2 3 27 27 H 1.07997 * 120.02253 * 359.95082 * 3 2 1 28 28 H 1.08994 * 109.47112 * 60.00258 * 8 6 5 29 29 H 1.09004 * 109.46869 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.47407 * 299.99746 * 8 6 5 31 31 H 1.09004 * 109.47139 * 55.00245 * 9 6 5 32 32 H 1.09004 * 109.47037 * 174.99710 * 9 6 5 33 33 H 0.96995 * 119.99552 * 179.97438 * 13 12 10 34 34 H 1.08001 * 120.02508 * 180.02562 * 18 4 3 35 35 H 1.08004 * 119.97756 * 180.02562 * 19 18 4 36 36 H 1.08999 * 109.47594 * 0.73903 * 21 20 2 37 37 H 1.09001 * 109.47580 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.47090 * 299.99819 * 22 21 20 39 39 H 1.09005 * 109.47273 * 59.99727 * 22 21 20 40 40 H 1.08998 * 109.46751 * 59.99996 * 23 21 20 41 41 H 1.09004 * 109.46799 * 179.97438 * 23 21 20 42 42 H 1.08999 * 109.47005 * 300.00324 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1962 0.0005 5 8 4.2656 2.3721 0.0000 6 6 5.6874 2.2981 -0.1214 7 1 5.9523 1.4923 -0.8060 8 6 6.3029 2.0233 1.2521 9 6 6.2227 3.6248 -0.6639 10 6 5.7134 3.8361 -2.0664 11 1 5.0723 3.0979 -2.5250 12 6 6.0666 4.9716 -2.7643 13 7 6.8477 5.8704 -2.2059 14 14 5.4358 5.2332 -4.5030 15 1 4.5810 4.0847 -4.8975 16 1 4.6383 6.4848 -4.5571 17 1 6.5860 5.3384 -5.4363 18 6 4.2752 -0.0071 0.0016 19 6 3.5805 -1.2009 0.0016 20 6 2.1977 -1.1976 -0.0051 21 6 1.4423 -2.5015 -0.0119 22 6 1.8255 -3.3066 -1.2552 23 6 1.7958 -3.3022 1.2431 24 1 -0.3634 -0.0744 -1.0249 25 1 -0.3634 -0.8505 0.5769 26 1 -0.3634 0.9249 0.4481 27 1 1.6572 2.1322 -0.0008 28 1 5.9216 1.0782 1.6386 29 1 7.3875 1.9664 1.1595 30 1 6.0382 2.8291 1.9368 31 1 5.8829 4.4415 -0.0269 32 1 7.3125 3.6004 -0.6729 33 1 7.0964 6.6689 -2.6970 34 1 5.3552 -0.0103 0.0025 35 1 4.1177 -2.1379 0.0029 36 1 0.3710 -2.3008 -0.0250 37 1 1.2795 -4.2499 -1.2599 38 1 1.5737 -2.7362 -2.1493 39 1 2.8969 -3.5073 -1.2421 40 1 1.5227 -2.7286 2.1288 41 1 1.2490 -4.2451 1.2385 42 1 2.8671 -3.5029 1.2562 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695842337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:14 Heat of formation + Delta-G solvation = -45.823554 kcal Electronic energy + Delta-G solvation = -19756.126922 eV Core-core repulsion = 16893.318147 eV Total energy + Delta-G solvation = -2862.808776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.167 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01461 -38.10424 -34.85796 -33.32769 -32.36603 -31.56373 -28.68082 -27.56940 -27.19491 -26.57768 -23.54621 -22.92157 -21.83326 -20.12068 -19.26434 -17.40729 -16.36586 -16.08435 -15.21079 -14.65498 -14.51223 -14.19410 -14.04037 -13.75327 -13.47400 -13.11403 -12.96235 -12.57079 -12.35164 -12.29275 -12.23119 -11.91608 -11.75772 -11.63232 -11.39795 -11.29011 -11.03576 -10.80869 -10.68973 -10.57210 -10.41594 -10.24894 -9.91369 -9.35732 -9.07910 -8.48305 -8.38242 -7.53935 -6.01121 -4.02164 1.63406 1.79797 3.32206 3.39607 3.45304 3.94279 4.06965 4.47042 4.73643 4.82605 5.11231 5.17348 5.19394 5.33400 5.36880 5.45744 5.53661 5.56909 5.63248 5.68429 5.71818 5.76124 5.76844 5.82569 5.90277 5.92014 5.97750 6.07291 6.18665 6.23906 6.27010 6.39085 6.58773 6.65258 6.71754 6.87516 6.92005 7.14363 7.51582 7.61288 7.95951 8.20886 8.38430 9.01877 9.61194 11.10423 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.004669 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.478365 B = 5994.992946 C = 6475.695107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.162 4.162 4 C 0.151 3.849 5 O -0.292 6.292 6 C 0.087 3.913 7 H 0.061 0.939 8 C -0.179 4.179 9 C 0.026 3.974 10 C -0.512 4.512 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.218 4.218 19 C -0.072 4.072 20 C -0.134 4.134 21 C -0.054 4.054 22 C -0.143 4.143 23 C -0.143 4.143 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.127 0.873 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.260 0.740 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.639 -16.430 6.099 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.049 4.049 3 C -0.180 4.180 4 C 0.104 3.896 5 O -0.204 6.204 6 C 0.032 3.968 7 H 0.079 0.921 8 C -0.236 4.236 9 C -0.011 4.011 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.237 4.237 19 C -0.090 4.090 20 C -0.134 4.134 21 C -0.072 4.072 22 C -0.200 4.200 23 C -0.200 4.200 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.144 0.856 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.610 -16.050 6.081 19.671 hybrid contribution 0.052 0.187 -0.998 1.016 sum -9.558 -15.864 5.083 19.205 Atomic orbital electron populations 1.20818 0.91524 1.02490 1.02205 1.19432 0.95411 0.91850 0.98167 1.20284 0.91358 0.98193 1.08204 1.19188 0.91901 0.85873 0.92625 1.86275 1.21888 1.26437 1.85799 1.22840 0.76491 1.02675 0.94802 0.92092 1.22439 1.01270 1.01340 0.98565 1.19265 0.96121 0.89412 0.96326 1.21169 1.29791 1.05357 0.98741 0.92544 1.24980 0.95177 0.95956 0.98256 1.69963 1.36079 1.10235 1.37390 0.86527 0.78676 0.78187 0.84621 1.19719 1.20950 1.21027 1.21338 1.00497 0.92240 1.09618 1.20640 0.93383 0.97024 0.97986 1.19394 0.93436 0.93782 1.06793 1.20074 0.99577 0.92258 0.95277 1.21851 1.01503 0.99168 0.97503 1.21856 1.01566 0.99212 0.97373 0.91241 0.91354 0.91600 0.85550 0.93215 0.91454 0.91956 0.95307 0.94397 0.93014 0.85389 0.86602 0.90317 0.92890 0.92595 0.92635 0.92706 0.92886 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.24 36.00 0.33 -0.90 16 2 C -0.05 -0.69 5.88 -104.64 -0.62 -1.31 16 3 C -0.16 -2.75 9.62 -39.43 -0.38 -3.13 16 4 C 0.15 2.87 6.58 -39.22 -0.26 2.61 16 5 O -0.29 -6.41 9.56 -19.42 -0.19 -6.60 16 6 C 0.09 1.86 2.18 -26.73 -0.06 1.80 16 7 H 0.06 1.27 6.46 -51.93 -0.34 0.94 16 8 C -0.18 -3.11 9.12 37.16 0.34 -2.77 16 9 C 0.03 0.66 4.68 -27.88 -0.13 0.53 16 10 C -0.51 -14.70 8.88 -34.44 -0.31 -15.00 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 14 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C -0.22 -3.64 8.15 -39.44 -0.32 -3.96 16 19 C -0.07 -1.03 8.70 -39.61 -0.34 -1.37 16 20 C -0.13 -1.79 4.78 -104.60 -0.50 -2.29 16 21 C -0.05 -0.56 2.87 -91.77 -0.26 -0.82 16 22 C -0.14 -1.38 9.00 37.16 0.33 -1.05 16 23 C -0.14 -1.31 9.01 37.16 0.33 -0.98 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.63 6.36 -51.93 -0.33 0.30 16 26 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 27 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 28 H 0.05 0.77 6.65 -51.93 -0.35 0.43 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.13 2.06 5.34 -52.49 -0.28 1.78 16 35 H 0.12 1.39 7.09 -52.48 -0.37 1.02 16 36 H 0.08 0.75 5.57 -51.93 -0.29 0.46 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.51 7.41 -51.93 -0.38 0.13 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -30.70 335.55 -8.25 -38.96 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.91 Total: -1.16 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -1.93 Total: -27.09 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.19 Total: -6.60 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.70 -8.25 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.866 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds