Wall clock time and date at job start Mon Mar 30 2020 07:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 119.97306 * 2 1 4 4 C 1.38713 * 119.94289 * 179.97438 * 3 2 1 5 5 O 1.35897 * 120.05408 * 179.97438 * 4 3 2 6 6 C 1.42891 * 117.00151 * 185.49993 * 5 4 3 7 7 H 1.09002 * 109.47676 * 37.20597 * 6 5 4 8 8 C 1.53004 * 109.46790 * 277.21120 * 6 5 4 9 9 C 1.53003 * 109.47377 * 157.21224 * 6 5 4 10 10 C 1.50699 * 109.46960 * 294.99816 * 9 6 5 11 11 H 1.07995 * 119.99874 * 359.97438 * 10 9 6 12 12 C 1.37882 * 119.99726 * 180.02562 * 10 9 6 13 13 N 1.31520 * 119.99853 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99804 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47013 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46758 * 119.99796 * 14 12 10 17 17 H 1.48497 * 109.46958 * 240.00055 * 14 12 10 18 18 C 1.38751 * 119.88841 * 359.97438 * 4 3 2 19 19 C 1.38118 * 119.94778 * 0.02562 * 18 4 3 20 20 C 1.38250 * 119.97435 * 180.24616 * 2 1 3 21 21 C 1.50694 * 119.94059 * 0.05029 * 20 2 1 22 22 C 1.52999 * 109.47286 * 120.74159 * 21 20 2 23 23 C 1.53007 * 109.46825 * 240.73939 * 21 20 2 24 24 H 1.08996 * 109.47367 * 94.15097 * 1 2 3 25 25 H 1.09002 * 109.47230 * 214.15167 * 1 2 3 26 26 H 1.09002 * 109.47331 * 334.15116 * 1 2 3 27 27 H 1.07997 * 120.02253 * 359.95082 * 3 2 1 28 28 H 1.08994 * 109.47112 * 60.00258 * 8 6 5 29 29 H 1.09004 * 109.46869 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.47407 * 299.99746 * 8 6 5 31 31 H 1.09004 * 109.47139 * 55.00245 * 9 6 5 32 32 H 1.09004 * 109.47037 * 174.99710 * 9 6 5 33 33 H 0.96995 * 119.99552 * 179.97438 * 13 12 10 34 34 H 1.08001 * 120.02508 * 180.02562 * 18 4 3 35 35 H 1.08004 * 119.97756 * 180.02562 * 19 18 4 36 36 H 1.08999 * 109.47594 * 0.73903 * 21 20 2 37 37 H 1.09001 * 109.47580 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.47090 * 299.99819 * 22 21 20 39 39 H 1.09005 * 109.47273 * 59.99727 * 22 21 20 40 40 H 1.08998 * 109.46751 * 59.99996 * 23 21 20 41 41 H 1.09004 * 109.46799 * 179.97438 * 23 21 20 42 42 H 1.08999 * 109.47005 * 300.00324 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1962 0.0005 5 8 4.2656 2.3721 0.0000 6 6 5.6874 2.2981 -0.1214 7 1 5.9523 1.4923 -0.8060 8 6 6.3029 2.0233 1.2521 9 6 6.2227 3.6248 -0.6639 10 6 5.7134 3.8361 -2.0664 11 1 5.0723 3.0979 -2.5250 12 6 6.0666 4.9716 -2.7643 13 7 6.8477 5.8704 -2.2059 14 14 5.4358 5.2332 -4.5030 15 1 4.5810 4.0847 -4.8975 16 1 4.6383 6.4848 -4.5571 17 1 6.5860 5.3384 -5.4363 18 6 4.2752 -0.0071 0.0016 19 6 3.5805 -1.2009 0.0016 20 6 2.1977 -1.1976 -0.0051 21 6 1.4423 -2.5015 -0.0119 22 6 1.8255 -3.3066 -1.2552 23 6 1.7958 -3.3022 1.2431 24 1 -0.3634 -0.0744 -1.0249 25 1 -0.3634 -0.8505 0.5769 26 1 -0.3634 0.9249 0.4481 27 1 1.6572 2.1322 -0.0008 28 1 5.9216 1.0782 1.6386 29 1 7.3875 1.9664 1.1595 30 1 6.0382 2.8291 1.9368 31 1 5.8829 4.4415 -0.0269 32 1 7.3125 3.6004 -0.6729 33 1 7.0964 6.6689 -2.6970 34 1 5.3552 -0.0103 0.0025 35 1 4.1177 -2.1379 0.0029 36 1 0.3710 -2.3008 -0.0250 37 1 1.2795 -4.2499 -1.2599 38 1 1.5737 -2.7362 -2.1493 39 1 2.8969 -3.5073 -1.2421 40 1 1.5227 -2.7286 2.1288 41 1 1.2490 -4.2451 1.2385 42 1 2.8671 -3.5029 1.2562 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695842337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:13 Heat of formation + Delta-G solvation = -61.303763 kcal Electronic energy + Delta-G solvation = -19756.798195 eV Core-core repulsion = 16893.318147 eV Total energy + Delta-G solvation = -2863.480048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.167 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30932 -39.43754 -36.05152 -35.17999 -33.48462 -33.36792 -29.88710 -29.46198 -27.90217 -27.67144 -25.38873 -24.14541 -23.29005 -21.36497 -20.53549 -18.86026 -18.51041 -17.37070 -16.53141 -16.28842 -16.07674 -15.35954 -15.27463 -14.83772 -14.66363 -14.37094 -14.13104 -13.76178 -13.70678 -13.56756 -13.40662 -13.36887 -13.09722 -13.02588 -12.80138 -12.68552 -12.50320 -12.33804 -12.04677 -11.90701 -11.61089 -11.56833 -11.35187 -11.18549 -11.01465 -10.61639 -9.67561 -8.83940 -8.23834 -6.32993 0.42989 0.56367 1.35554 1.36625 1.49827 2.38052 2.47937 2.83539 3.10605 3.82104 3.88168 3.98072 4.05021 4.18609 4.22674 4.33815 4.37431 4.41019 4.47421 4.60313 4.65151 4.76647 4.84715 4.86755 4.88582 4.98061 5.01407 5.06601 5.08469 5.14246 5.18052 5.30179 5.34283 5.42564 5.44831 5.47012 5.54914 5.57772 5.73577 5.81878 6.02878 6.16829 6.72709 6.79432 7.34614 8.88206 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.004669 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.478365 B = 5994.992946 C = 6475.695107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.050 4.050 3 C -0.181 4.181 4 C 0.113 3.887 5 O -0.324 6.324 6 C 0.096 3.904 7 H 0.062 0.938 8 C -0.167 4.167 9 C 0.029 3.971 10 C -0.532 4.532 11 H 0.048 0.952 12 C 0.004 3.996 13 N -0.930 5.930 14 Si 0.961 3.039 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.272 1.272 18 C -0.227 4.227 19 C -0.072 4.072 20 C -0.125 4.125 21 C -0.052 4.052 22 C -0.143 4.143 23 C -0.141 4.141 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.055 0.945 31 H -0.002 1.002 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 -19.054 5.720 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.050 4.050 3 C -0.200 4.200 4 C 0.067 3.933 5 O -0.238 6.238 6 C 0.040 3.960 7 H 0.079 0.921 8 C -0.225 4.225 9 C -0.008 4.008 10 C -0.570 4.570 11 H 0.066 0.934 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.785 3.215 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.197 1.197 18 C -0.245 4.245 19 C -0.090 4.090 20 C -0.126 4.126 21 C -0.071 4.071 22 C -0.200 4.200 23 C -0.199 4.199 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.137 0.863 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.016 0.984 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.147 0.853 35 H 0.159 0.841 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.120 -18.691 5.711 22.486 hybrid contribution 0.438 0.921 -0.857 1.332 sum -10.681 -17.769 4.854 21.293 Atomic orbital electron populations 1.20898 0.88894 1.03768 1.03335 1.19845 0.97340 0.91062 0.96764 1.20485 0.90939 0.99289 1.09251 1.19502 0.92610 0.85623 0.95535 1.86173 1.21878 1.28735 1.87062 1.22537 0.77039 0.99647 0.96756 0.92055 1.22326 1.01917 1.02121 0.96104 1.19111 0.95423 0.91221 0.95033 1.21465 1.29843 1.05532 1.00133 0.93376 1.25858 0.95273 0.95580 1.02628 1.70070 1.37039 1.10756 1.39184 0.85463 0.78419 0.78141 0.79443 1.19407 1.20255 1.19687 1.21431 1.00704 0.92351 1.10032 1.20959 0.94051 0.97061 0.96917 1.19864 0.93433 0.95081 1.04189 1.20170 0.99864 0.90671 0.96354 1.21852 1.01752 0.99862 0.96527 1.21847 1.01846 0.99846 0.96318 0.90152 0.89075 0.91266 0.86292 0.91087 0.89986 0.92560 0.98366 0.95592 0.92607 0.85281 0.84061 0.88969 0.90778 0.93568 0.92808 0.93114 0.90868 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 9.24 71.23 0.66 -1.51 16 2 C -0.05 -1.36 5.88 -19.88 -0.12 -1.47 16 3 C -0.18 -6.27 9.62 22.37 0.22 -6.05 16 4 C 0.11 4.40 6.58 22.51 0.15 4.55 16 5 O -0.32 -14.96 9.56 -92.39 -0.88 -15.84 16 6 C 0.10 4.23 2.18 30.60 0.07 4.29 16 7 H 0.06 2.64 6.46 -2.39 -0.02 2.63 16 8 C -0.17 -5.89 9.12 71.98 0.66 -5.23 16 9 C 0.03 1.58 4.68 29.85 0.14 1.72 16 10 C -0.53 -31.57 8.88 25.60 0.23 -31.35 16 11 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 12 C 0.00 0.26 5.46 84.66 0.46 0.73 16 13 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 14 Si 0.96 45.91 29.54 68.60 2.03 47.93 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 C -0.23 -7.50 8.15 22.36 0.18 -7.32 16 19 C -0.07 -1.92 8.70 22.25 0.19 -1.73 16 20 C -0.13 -3.08 4.78 -19.85 -0.09 -3.17 16 21 C -0.05 -0.90 2.87 -11.54 -0.03 -0.94 16 22 C -0.14 -2.27 9.00 71.98 0.65 -1.63 16 23 C -0.14 -2.08 9.01 71.98 0.65 -1.43 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 25 H 0.09 1.34 6.36 -2.39 -0.02 1.32 16 26 H 0.07 1.29 8.06 -2.39 -0.02 1.27 16 27 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 28 H 0.07 2.18 6.65 -2.39 -0.02 2.16 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.13 4.12 5.34 -2.91 -0.02 4.11 16 35 H 0.14 3.00 7.09 -2.91 -0.02 2.98 16 36 H 0.09 1.37 5.57 -2.39 -0.01 1.35 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 0.87 7.36 -2.38 -0.02 0.86 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.05 0.82 7.41 -2.39 -0.02 0.80 16 Total: -1.00 -68.19 335.55 6.41 -61.78 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.98 Total: 13.60 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 4.00 Total: -50.54 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.28 Total: -56.93 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.88 Total: -15.84 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -68.19 6.41 -61.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.477 kcal (2) G-P(sol) polarization free energy of solvation -68.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds