Wall clock time and date at job start Mon Mar 30 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00142 * 2 1 4 4 H 1.48503 * 109.46976 * 269.99669 * 3 2 1 5 5 H 1.48494 * 109.47223 * 29.99835 * 3 2 1 6 6 H 1.48505 * 109.46935 * 150.00101 * 3 2 1 7 7 C 1.37878 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00149 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47102 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46819 * 180.02562 * 10 9 7 12 12 C 1.34782 * 119.99829 * 179.97438 * 11 10 9 13 13 O 1.21692 * 119.99783 * 5.10249 * 12 11 10 14 14 C 1.46676 * 119.99729 * 185.09805 * 12 11 10 15 15 C 1.37874 * 126.23999 * 5.41215 * 14 12 11 16 16 C 1.39825 * 107.08736 * 180.23841 * 15 14 12 17 17 C 1.35456 * 107.86975 * 359.75824 * 16 15 14 18 18 N 1.35530 * 108.86701 * 0.02562 * 17 16 15 19 19 C 1.46504 * 125.67798 * 179.97438 * 18 17 16 20 20 C 1.53782 * 113.60927 * 55.24080 * 19 18 17 21 21 C 1.53783 * 87.07914 * 220.01730 * 20 19 18 22 22 C 1.53778 * 87.17056 * 25.38847 * 21 20 19 23 23 H 0.97003 * 120.00121 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46694 * 60.00433 * 9 7 2 25 25 H 1.09000 * 109.47321 * 300.00471 * 9 7 2 26 26 H 1.08998 * 109.47024 * 60.00596 * 10 9 7 27 27 H 1.09000 * 109.47386 * 300.00393 * 10 9 7 28 28 H 0.96997 * 120.00299 * 0.02562 * 11 10 9 29 29 H 1.07999 * 126.44955 * 359.97438 * 15 14 12 30 30 H 1.08007 * 126.06734 * 179.74184 * 16 15 14 31 31 H 1.07999 * 125.56605 * 179.97438 * 17 16 15 32 32 H 1.09003 * 112.90566 * 186.48577 * 19 18 17 33 33 H 1.08999 * 113.61683 * 105.47017 * 20 19 18 34 34 H 1.08995 * 113.61572 * 334.56888 * 20 19 18 35 35 H 1.09002 * 113.61061 * 139.98237 * 21 20 19 36 36 H 1.08997 * 113.61503 * 270.80053 * 21 20 19 37 37 H 1.09010 * 113.61059 * 89.16175 * 22 21 20 38 38 H 1.09001 * 113.61517 * 220.05635 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0981 -0.0018 13 8 3.3998 -6.1002 0.0919 14 6 1.4574 -7.3657 -0.1153 15 6 0.1035 -7.5107 -0.3317 16 6 -0.1626 -8.8830 -0.3651 17 6 1.0082 -9.5380 -0.1783 18 7 2.0007 -8.6275 -0.0279 19 6 3.4156 -8.9349 0.1958 20 6 4.0225 -9.8562 -0.8755 21 6 4.7723 -10.5606 0.2676 22 6 3.6484 -10.0783 1.1998 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8718 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 0.5427 -4.9308 -0.0019 29 1 -0.6165 -6.7142 -0.4486 30 1 -1.1301 -9.3397 -0.5134 31 1 1.1306 -10.6108 -0.1524 32 1 4.0154 -8.0478 0.3994 33 1 4.6793 -9.3391 -1.5750 34 1 3.2887 -10.4906 -1.3725 35 1 4.8149 -11.6444 0.1592 36 1 5.7436 -10.1190 0.4901 37 1 2.8119 -10.7737 1.2713 38 1 4.0034 -9.7403 2.1734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700872747.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:51 Heat of formation + Delta-G solvation = 18.433783 kcal Electronic energy + Delta-G solvation = -19056.640655 eV Core-core repulsion = 16093.077943 eV Total energy + Delta-G solvation = -2963.562712 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53505 -38.83309 -38.17111 -34.88929 -32.89068 -31.29075 -30.24174 -28.58706 -26.01254 -25.17478 -24.85448 -22.35353 -21.13597 -20.85726 -19.71336 -18.91321 -17.95019 -16.43650 -15.71377 -15.68447 -15.25542 -15.03565 -14.46045 -14.30208 -14.14833 -13.50586 -13.15090 -12.95122 -12.87816 -12.37912 -12.30874 -12.26549 -12.15293 -11.44047 -11.20082 -11.03366 -10.82766 -10.78159 -10.63531 -10.33205 -9.80395 -9.49607 -9.22098 -8.67460 -8.60450 -8.39803 -8.06924 -6.08436 -4.11379 1.62277 2.74460 2.80037 3.30188 3.36280 3.40243 3.66642 3.78840 4.13535 4.28391 4.42634 4.54950 4.60157 4.93791 5.08818 5.23780 5.28607 5.30240 5.34522 5.43514 5.51984 5.56920 5.64419 5.69900 6.02392 6.11535 6.24335 6.34043 6.34903 6.72963 6.81685 6.93163 7.09769 7.28345 7.53028 7.62598 7.89596 8.01337 8.28103 8.61555 8.94442 9.53341 11.03180 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.003649 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.482981 B = 7670.538561 C = 8327.439643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.124 3.876 11 N -0.708 5.708 12 C 0.579 3.421 13 O -0.562 6.562 14 C -0.043 4.043 15 C -0.145 4.145 16 C -0.208 4.208 17 C 0.007 3.993 18 N -0.397 5.397 19 C 0.095 3.905 20 C -0.146 4.146 21 C -0.137 4.137 22 C -0.148 4.148 23 H 0.262 0.738 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.401 0.599 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.162 0.838 32 H 0.148 0.852 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -21.910 0.042 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.002 3.998 11 N -0.356 5.356 12 C 0.367 3.633 13 O -0.444 6.444 14 C -0.156 4.156 15 C -0.171 4.171 16 C -0.232 4.232 17 C -0.128 4.128 18 N -0.070 5.070 19 C -0.006 4.006 20 C -0.184 4.184 21 C -0.175 4.175 22 C -0.186 4.186 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.235 0.765 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.179 0.821 32 H 0.166 0.834 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.842 -21.792 0.158 22.129 hybrid contribution -0.212 0.892 -0.053 0.919 sum 3.629 -20.900 0.105 21.213 Atomic orbital electron populations 1.69955 1.06080 1.26881 1.50307 1.24995 0.94895 0.99399 0.94989 0.86510 0.79832 0.83009 0.78191 1.20558 1.21166 1.19736 1.21040 0.93233 0.90353 1.51427 0.92245 1.19335 0.94215 0.90997 0.98002 1.21769 0.96081 0.81049 1.00904 1.46029 1.10715 1.05839 1.73054 1.17062 0.86521 0.82840 0.76917 1.90685 1.13815 1.87560 1.52320 1.20315 0.93296 0.85738 1.16283 1.21403 0.93175 0.97181 1.05380 1.20771 0.97640 0.93529 1.11243 1.21775 0.87503 0.95193 1.08326 1.44024 1.07191 1.04626 1.51117 1.23669 0.79506 1.00019 0.97433 1.23395 0.99909 0.97991 0.97135 1.22686 0.97981 1.00821 0.95977 1.23447 0.99344 0.97163 0.98601 0.92827 0.95804 0.95812 0.92334 0.92451 0.76493 0.83798 0.84246 0.82100 0.83442 0.90277 0.89486 0.90528 0.89399 0.89394 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.68 5.62 -4.04 -0.02 2.66 16 11 N -0.71 -13.07 5.53 -61.62 -0.34 -13.41 16 12 C 0.58 10.73 7.77 -12.85 -0.10 10.63 16 13 O -0.56 -11.72 14.48 5.20 0.08 -11.65 16 14 C -0.04 -0.67 6.89 -81.98 -0.56 -1.24 16 15 C -0.15 -1.99 10.35 -39.12 -0.40 -2.39 16 16 C -0.21 -2.44 10.81 -39.98 -0.43 -2.87 16 17 C 0.01 0.08 9.97 -16.91 -0.17 -0.09 16 18 N -0.40 -5.36 2.96 -104.85 -0.31 -5.67 16 19 C 0.10 1.15 4.39 -67.03 -0.29 0.86 16 20 C -0.15 -1.38 7.73 -25.92 -0.20 -1.58 16 21 C -0.14 -1.04 8.08 -25.92 -0.21 -1.25 16 22 C -0.15 -1.32 7.67 -25.83 -0.20 -1.52 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.40 6.55 7.42 -40.82 -0.30 6.25 16 29 H 0.14 1.74 7.49 -52.49 -0.39 1.35 16 30 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 31 H 0.16 1.27 7.63 -52.49 -0.40 0.87 16 32 H 0.15 2.18 5.70 -51.93 -0.30 1.89 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.76 7.73 -51.93 -0.40 0.35 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.70 7.11 -51.92 -0.37 0.33 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -31.66 318.38 -8.72 -40.37 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.51 Total: 4.51 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -3.15 Total: -9.91 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.08 Total: -44.53 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.66 -8.72 -40.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872747.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.809 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds