Wall clock time and date at job start Mon Mar 30 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00142 * 2 1 4 4 H 1.48503 * 109.46976 * 269.99669 * 3 2 1 5 5 H 1.48494 * 109.47223 * 29.99835 * 3 2 1 6 6 H 1.48505 * 109.46935 * 150.00101 * 3 2 1 7 7 C 1.37878 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00149 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47102 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46819 * 180.02562 * 10 9 7 12 12 C 1.34782 * 119.99829 * 179.97438 * 11 10 9 13 13 O 1.21692 * 119.99783 * 5.10249 * 12 11 10 14 14 C 1.46676 * 119.99729 * 185.09805 * 12 11 10 15 15 C 1.37874 * 126.23999 * 5.41215 * 14 12 11 16 16 C 1.39825 * 107.08736 * 180.23841 * 15 14 12 17 17 C 1.35456 * 107.86975 * 359.75824 * 16 15 14 18 18 N 1.35530 * 108.86701 * 0.02562 * 17 16 15 19 19 C 1.46504 * 125.67798 * 179.97438 * 18 17 16 20 20 C 1.53782 * 113.60927 * 55.24080 * 19 18 17 21 21 C 1.53783 * 87.07914 * 220.01730 * 20 19 18 22 22 C 1.53778 * 87.17056 * 25.38847 * 21 20 19 23 23 H 0.97003 * 120.00121 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46694 * 60.00433 * 9 7 2 25 25 H 1.09000 * 109.47321 * 300.00471 * 9 7 2 26 26 H 1.08998 * 109.47024 * 60.00596 * 10 9 7 27 27 H 1.09000 * 109.47386 * 300.00393 * 10 9 7 28 28 H 0.96997 * 120.00299 * 0.02562 * 11 10 9 29 29 H 1.07999 * 126.44955 * 359.97438 * 15 14 12 30 30 H 1.08007 * 126.06734 * 179.74184 * 16 15 14 31 31 H 1.07999 * 125.56605 * 179.97438 * 17 16 15 32 32 H 1.09003 * 112.90566 * 186.48577 * 19 18 17 33 33 H 1.08999 * 113.61683 * 105.47017 * 20 19 18 34 34 H 1.08995 * 113.61572 * 334.56888 * 20 19 18 35 35 H 1.09002 * 113.61061 * 139.98237 * 21 20 19 36 36 H 1.08997 * 113.61503 * 270.80053 * 21 20 19 37 37 H 1.09010 * 113.61059 * 89.16175 * 22 21 20 38 38 H 1.09001 * 113.61517 * 220.05635 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0981 -0.0018 13 8 3.3998 -6.1002 0.0919 14 6 1.4574 -7.3657 -0.1153 15 6 0.1035 -7.5107 -0.3317 16 6 -0.1626 -8.8830 -0.3651 17 6 1.0082 -9.5380 -0.1783 18 7 2.0007 -8.6275 -0.0279 19 6 3.4156 -8.9349 0.1958 20 6 4.0225 -9.8562 -0.8755 21 6 4.7723 -10.5606 0.2676 22 6 3.6484 -10.0783 1.1998 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8718 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 0.5427 -4.9308 -0.0019 29 1 -0.6165 -6.7142 -0.4486 30 1 -1.1301 -9.3397 -0.5134 31 1 1.1306 -10.6108 -0.1524 32 1 4.0154 -8.0478 0.3994 33 1 4.6793 -9.3391 -1.5750 34 1 3.2887 -10.4906 -1.3725 35 1 4.8149 -11.6444 0.1592 36 1 5.7436 -10.1190 0.4901 37 1 2.8119 -10.7737 1.2713 38 1 4.0034 -9.7403 2.1734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700872747.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:51 Heat of formation + Delta-G solvation = -0.711703 kcal Electronic energy + Delta-G solvation = -19057.470866 eV Core-core repulsion = 16093.077943 eV Total energy + Delta-G solvation = -2964.392922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.53773 -40.21667 -39.04673 -36.64398 -34.87589 -32.36022 -31.82645 -29.96656 -26.79900 -26.70416 -25.97089 -23.84920 -22.73219 -21.88887 -20.87945 -19.93781 -19.00891 -18.49215 -17.04822 -16.68452 -16.59569 -16.45013 -16.31437 -15.61112 -14.97286 -14.91094 -14.60962 -14.32891 -14.16212 -13.56463 -13.31041 -13.28111 -13.13457 -13.00397 -12.92595 -12.54000 -12.27110 -12.15757 -11.72243 -11.57278 -11.56132 -11.43118 -10.91015 -10.61590 -10.14332 -9.63493 -9.15145 -8.24672 -6.35572 0.46652 1.41440 1.42298 1.53625 1.70869 1.83295 2.34757 2.37196 2.50559 3.09977 3.37822 3.55651 3.78256 3.81453 3.85528 4.13811 4.34439 4.43184 4.44979 4.50647 4.62943 4.63668 4.72402 4.80841 4.91938 4.93909 4.99368 5.18673 5.22909 5.27443 5.38659 5.45822 5.55423 5.75931 5.86189 6.05897 6.14007 6.38410 6.57061 6.77256 7.16270 7.33701 8.87356 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.003649 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.482981 B = 7670.538561 C = 8327.439643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.144 3.856 11 N -0.706 5.706 12 C 0.577 3.423 13 O -0.595 6.595 14 C -0.090 4.090 15 C -0.140 4.140 16 C -0.216 4.216 17 C 0.027 3.973 18 N -0.401 5.401 19 C 0.073 3.927 20 C -0.141 4.141 21 C -0.123 4.123 22 C -0.137 4.137 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.410 0.590 29 H 0.152 0.848 30 H 0.169 0.831 31 H 0.203 0.797 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -24.035 -0.064 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.021 3.979 11 N -0.356 5.356 12 C 0.367 3.633 13 O -0.479 6.479 14 C -0.203 4.203 15 C -0.167 4.167 16 C -0.239 4.239 17 C -0.108 4.108 18 N -0.073 5.073 19 C -0.029 4.029 20 C -0.179 4.179 21 C -0.161 4.161 22 C -0.175 4.175 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.247 0.753 29 H 0.170 0.830 30 H 0.186 0.814 31 H 0.220 0.780 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.653 -23.928 0.052 24.206 hybrid contribution -0.202 1.459 -0.025 1.473 sum 3.451 -22.469 0.026 22.733 Atomic orbital electron populations 1.70061 1.07568 1.28060 1.50860 1.25887 0.95816 1.03141 0.94335 0.85421 0.78597 0.78326 0.78556 1.19694 1.20452 1.19051 1.21449 0.93596 0.91827 1.51753 0.92240 1.19135 0.94196 0.91645 0.96456 1.21270 0.95066 0.81601 0.99961 1.45810 1.11063 1.05050 1.73648 1.17497 0.86294 0.83699 0.75810 1.90665 1.15265 1.88126 1.53810 1.20002 0.94102 0.85494 1.20658 1.21703 0.92381 0.98834 1.03804 1.21160 0.99210 0.92458 1.11100 1.22506 0.86535 0.96653 1.05150 1.44245 1.08085 1.04175 1.50798 1.23793 0.78776 0.99825 1.00467 1.23417 1.00054 0.97476 0.96943 1.22654 0.97238 1.02147 0.94032 1.23462 1.00425 0.95836 0.97813 0.92482 0.97174 0.97302 0.93381 0.93295 0.75346 0.83027 0.81399 0.78041 0.87170 0.91524 0.87946 0.87886 0.89586 0.87458 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.14 9.11 25.60 0.23 -30.90 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.20 5.09 29.85 0.15 1.35 16 10 C 0.14 6.52 5.62 86.38 0.49 7.01 16 11 N -0.71 -27.22 5.53 -467.08 -2.58 -29.80 16 12 C 0.58 22.30 7.77 86.45 0.67 22.97 16 13 O -0.59 -26.23 14.48 -4.32 -0.06 -26.29 16 14 C -0.09 -2.84 6.89 40.35 0.28 -2.57 16 15 C -0.14 -3.69 10.35 22.57 0.23 -3.46 16 16 C -0.22 -4.42 10.81 22.01 0.24 -4.18 16 17 C 0.03 0.52 9.97 83.48 0.83 1.35 16 18 N -0.40 -10.37 2.96 -485.64 -1.44 -11.81 16 19 C 0.07 1.73 4.39 45.57 0.20 1.93 16 20 C -0.14 -2.44 7.73 31.12 0.24 -2.20 16 21 C -0.12 -1.56 8.08 31.12 0.25 -1.31 16 22 C -0.14 -2.16 7.67 31.18 0.24 -1.92 16 23 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.41 13.96 7.42 -92.71 -0.69 13.27 16 29 H 0.15 3.57 7.49 -2.91 -0.02 3.55 16 30 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.20 2.09 7.63 -2.91 -0.02 2.07 16 32 H 0.11 3.47 5.70 -2.39 -0.01 3.45 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.45 7.73 -2.39 -0.02 1.43 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.27 7.11 -2.38 -0.02 1.26 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -69.98 318.38 3.11 -66.87 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.37 Total: 20.65 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 4.52 Total: -11.06 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -3.74 Total: -96.23 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.06 Total: -26.29 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.98 3.11 -66.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872747.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.156 kcal (2) G-P(sol) polarization free energy of solvation -69.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds