Wall clock time and date at job start Mon Mar 30 2020 07:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47266 * 2 1 4 4 C 1.36878 * 120.00098 * 261.25409 * 3 2 1 5 5 H 1.08003 * 119.99792 * 201.96172 * 4 3 2 6 6 C 1.39010 * 120.00081 * 21.96389 * 4 3 2 7 7 N 1.31398 * 119.99983 * 25.33145 * 6 4 3 8 8 Si 1.86798 * 119.99775 * 205.33497 * 6 4 3 9 9 H 1.48502 * 109.46981 * 90.00155 * 8 6 4 10 10 H 1.48500 * 109.46963 * 209.99635 * 8 6 4 11 11 H 1.48493 * 109.47250 * 329.99718 * 8 6 4 12 12 C 1.34779 * 119.99716 * 81.25541 * 3 2 1 13 13 O 1.21740 * 119.99968 * 179.02989 * 12 3 2 14 14 C 1.46544 * 120.00029 * 359.02990 * 12 3 2 15 15 C 1.37993 * 126.24476 * 350.86121 * 14 12 3 16 16 C 1.39798 * 107.08727 * 180.28619 * 15 14 12 17 17 C 1.35490 * 107.87791 * 359.74038 * 16 15 14 18 18 N 1.35586 * 108.88255 * 359.97438 * 17 16 15 19 19 C 1.46497 * 125.68429 * 179.97438 * 18 17 16 20 20 C 1.53784 * 113.60870 * 54.74482 * 19 18 17 21 21 C 1.53790 * 87.08010 * 220.01944 * 20 19 18 22 22 C 1.53780 * 87.16983 * 25.39562 * 21 20 19 23 23 H 1.09001 * 109.47226 * 195.16874 * 1 2 3 24 24 H 1.08998 * 109.46735 * 315.17391 * 1 2 3 25 25 H 1.09003 * 109.47031 * 75.17046 * 1 2 3 26 26 H 1.09001 * 109.47033 * 240.00142 * 2 1 3 27 27 H 1.08999 * 109.46915 * 120.00379 * 2 1 3 28 28 H 0.96994 * 119.99980 * 179.97438 * 7 6 4 29 29 H 1.08004 * 126.45586 * 0.02958 * 15 14 12 30 30 H 1.08006 * 126.06117 * 179.69952 * 16 15 14 31 31 H 1.08005 * 125.55602 * 179.97438 * 17 16 15 32 32 H 1.08993 * 112.91209 * 185.99592 * 19 18 17 33 33 H 1.09004 * 113.61159 * 105.47676 * 20 19 18 34 34 H 1.08991 * 113.62159 * 334.56972 * 20 19 18 35 35 H 1.09000 * 113.61186 * 139.98665 * 21 20 19 36 36 H 1.08995 * 113.61219 * 270.80539 * 21 20 19 37 37 H 1.08996 * 113.61874 * 89.15913 * 22 21 20 38 38 H 1.09004 * 113.61001 * 220.06213 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4165 1.9664 -1.1716 5 1 3.0877 2.8122 -1.1519 6 6 1.9567 1.4720 -2.3868 7 7 0.8164 0.8215 -2.4423 8 14 2.9602 1.7324 -3.9407 9 1 3.9013 0.5975 -4.1182 10 1 2.0494 1.8078 -5.1112 11 1 3.7273 2.9988 -3.8281 12 6 2.0757 2.0756 1.1537 13 8 2.4981 3.2174 1.1565 14 6 1.6296 1.4563 2.4047 15 6 0.9705 0.2503 2.5283 16 6 0.7319 0.0504 3.8911 17 6 1.2427 1.1105 4.5627 18 7 1.7947 1.9701 3.6712 19 6 2.4506 3.2380 4.0003 20 6 3.5880 3.0952 5.0253 21 6 3.0802 4.4039 5.6536 22 6 1.7019 4.0636 5.0625 23 1 -0.3634 -0.9919 0.2689 24 1 -0.3633 0.7289 0.7245 25 1 -0.3633 0.2630 -0.9935 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.4955 0.4769 -3.2902 29 1 0.6881 -0.4122 1.7234 30 1 0.2289 -0.7983 4.3307 31 1 1.2147 1.2482 5.6336 32 1 2.7281 3.8138 3.1174 33 1 4.5830 3.1783 4.5878 34 1 3.4822 2.2281 5.6771 35 1 3.1006 4.4016 6.7434 36 1 3.5310 5.2983 5.2236 37 1 1.0794 3.4616 5.7245 38 1 1.1764 4.9272 4.6550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700873256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:57 Heat of formation + Delta-G solvation = 72.736294 kcal Electronic energy + Delta-G solvation = -20456.559555 eV Core-core repulsion = 17495.351576 eV Total energy + Delta-G solvation = -2961.207978 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00879 -38.45315 -37.54301 -35.16843 -32.23104 -30.64299 -29.76660 -28.28096 -25.66396 -24.98815 -24.62185 -22.33905 -21.18357 -20.56330 -19.47233 -18.10721 -17.06496 -16.61182 -15.53550 -15.23257 -14.48259 -14.36919 -14.13350 -14.03489 -13.32847 -13.22465 -12.73295 -12.53395 -12.37624 -11.98627 -11.80945 -11.72400 -11.35579 -11.21842 -11.04471 -10.89374 -10.51372 -10.45728 -10.39364 -10.32763 -10.04901 -9.73889 -8.99981 -8.39315 -8.05242 -7.67375 -7.45722 -6.34447 -3.85437 2.33708 3.16402 3.24072 3.27888 3.40110 3.41785 4.12307 4.38228 4.51513 4.63620 4.82318 4.94516 5.04901 5.13404 5.42219 5.63548 5.64396 5.71818 5.78979 5.84208 5.93355 5.97012 6.08334 6.13850 6.22427 6.45051 6.57930 6.64438 6.73589 6.80284 6.92221 7.23039 7.42860 7.47439 7.74417 7.90451 7.94340 8.14813 8.53613 9.16504 9.38894 10.00145 10.60734 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027363 B = 0.006309 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.019405 B = 4436.819263 C = 5217.112653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 N -0.415 5.415 4 C -0.308 4.308 5 H 0.102 0.898 6 C 0.037 3.963 7 N -0.854 5.854 8 Si 0.921 3.079 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.269 1.269 12 C 0.503 3.497 13 O -0.604 6.604 14 C -0.006 4.006 15 C -0.195 4.195 16 C -0.213 4.213 17 C -0.017 4.017 18 N -0.404 5.404 19 C 0.101 3.899 20 C -0.148 4.148 21 C -0.136 4.136 22 C -0.148 4.148 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.269 0.731 29 H 0.174 0.826 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.752 -0.999 11.525 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.011 4.011 3 N -0.131 5.131 4 C -0.436 4.436 5 H 0.120 0.880 6 C -0.168 4.168 7 N -0.492 5.492 8 Si 0.748 3.252 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.193 1.193 12 C 0.294 3.706 13 O -0.493 6.493 14 C -0.120 4.120 15 C -0.220 4.220 16 C -0.238 4.238 17 C -0.150 4.150 18 N -0.077 5.077 19 C -0.002 4.002 20 C -0.186 4.186 21 C -0.174 4.174 22 C -0.186 4.186 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.134 0.866 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.191 0.809 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.021 -0.220 11.391 11.439 hybrid contribution 0.210 -0.106 -0.609 0.653 sum 1.231 -0.326 10.782 10.857 Atomic orbital electron populations 1.22649 0.96111 0.98542 1.06322 1.21747 0.95036 0.83654 1.00694 1.43399 1.53655 1.10509 1.05557 1.19650 1.25769 1.16452 0.81765 0.88022 1.25322 0.94990 0.97156 0.99316 1.69871 1.15934 1.36637 1.26722 0.86006 0.79685 0.79094 0.80439 1.20271 1.20980 1.19336 1.16812 0.85505 0.85510 0.82786 1.90519 1.53769 1.18608 1.86358 1.20680 1.08798 0.96757 0.85790 1.22760 1.04179 0.97456 0.97565 1.20761 1.08754 1.00052 0.94233 1.21581 1.05344 0.93112 0.95000 1.43946 1.42201 1.16354 1.05205 1.23560 0.93187 0.83894 0.99526 1.23401 0.99079 0.98268 0.97858 1.22670 0.96528 0.97880 1.00344 1.23421 0.97130 1.00322 0.97688 0.94719 0.93756 0.86617 0.90559 0.92322 0.92074 0.80890 0.85182 0.83061 0.83234 0.90630 0.89741 0.90898 0.89614 0.89689 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.84 8.02 37.16 0.30 -3.54 16 2 C 0.11 2.55 4.80 -4.04 -0.02 2.53 16 3 N -0.42 -10.91 2.63 -116.34 -0.31 -11.21 16 4 C -0.31 -8.57 9.20 -15.01 -0.14 -8.70 16 5 H 0.10 2.97 7.48 -52.48 -0.39 2.58 16 6 C 0.04 0.95 4.70 -17.45 -0.08 0.87 16 7 N -0.85 -21.81 8.89 55.50 0.49 -21.31 16 8 Si 0.92 20.17 29.62 -169.99 -5.04 15.13 16 9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 C 0.50 13.18 7.40 -12.91 -0.10 13.09 16 13 O -0.60 -17.11 14.18 5.15 0.07 -17.04 16 14 C -0.01 -0.14 6.59 -81.98 -0.54 -0.68 16 15 C -0.19 -3.87 7.33 -39.09 -0.29 -4.16 16 16 C -0.21 -3.62 10.81 -39.98 -0.43 -4.05 16 17 C -0.02 -0.28 9.96 -16.87 -0.17 -0.45 16 18 N -0.40 -7.68 2.97 -104.83 -0.31 -7.99 16 19 C 0.10 1.70 4.43 -67.02 -0.30 1.41 16 20 C -0.15 -1.97 7.73 -25.91 -0.20 -2.17 16 21 C -0.14 -1.51 8.08 -25.91 -0.21 -1.71 16 22 C -0.15 -1.94 7.67 -25.83 -0.20 -2.14 16 23 H 0.03 0.63 7.83 -51.93 -0.41 0.22 16 24 H 0.04 0.99 6.32 -51.93 -0.33 0.66 16 25 H 0.12 2.77 5.33 -51.93 -0.28 2.49 16 26 H 0.08 1.80 6.69 -51.93 -0.35 1.46 16 27 H 0.06 1.22 5.17 -51.93 -0.27 0.96 16 28 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 29 H 0.17 3.34 2.89 -52.48 -0.15 3.19 16 30 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 31 H 0.15 1.92 7.65 -52.48 -0.40 1.52 16 32 H 0.15 3.04 5.66 -51.93 -0.29 2.75 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.05 7.72 -51.93 -0.40 0.65 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.03 7.13 -51.93 -0.37 0.66 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -30.09 295.11 -7.89 -37.98 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.89 Total: 9.70 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.37 Total: -9.71 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.12 Total: -40.51 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.07 Total: -17.04 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.04 Total: 15.13 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.09 -7.89 -37.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700873256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.721 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds