Wall clock time and date at job start Mon Mar 30 2020 07:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47266 * 2 1 4 4 C 1.36878 * 120.00098 * 261.25409 * 3 2 1 5 5 H 1.08003 * 119.99792 * 201.96172 * 4 3 2 6 6 C 1.39010 * 120.00081 * 21.96389 * 4 3 2 7 7 N 1.31398 * 119.99983 * 25.33145 * 6 4 3 8 8 Si 1.86798 * 119.99775 * 205.33497 * 6 4 3 9 9 H 1.48502 * 109.46981 * 90.00155 * 8 6 4 10 10 H 1.48500 * 109.46963 * 209.99635 * 8 6 4 11 11 H 1.48493 * 109.47250 * 329.99718 * 8 6 4 12 12 C 1.34779 * 119.99716 * 81.25541 * 3 2 1 13 13 O 1.21740 * 119.99968 * 179.02989 * 12 3 2 14 14 C 1.46544 * 120.00029 * 359.02990 * 12 3 2 15 15 C 1.37993 * 126.24476 * 350.86121 * 14 12 3 16 16 C 1.39798 * 107.08727 * 180.28619 * 15 14 12 17 17 C 1.35490 * 107.87791 * 359.74038 * 16 15 14 18 18 N 1.35586 * 108.88255 * 359.97438 * 17 16 15 19 19 C 1.46497 * 125.68429 * 179.97438 * 18 17 16 20 20 C 1.53784 * 113.60870 * 54.74482 * 19 18 17 21 21 C 1.53790 * 87.08010 * 220.01944 * 20 19 18 22 22 C 1.53780 * 87.16983 * 25.39562 * 21 20 19 23 23 H 1.09001 * 109.47226 * 195.16874 * 1 2 3 24 24 H 1.08998 * 109.46735 * 315.17391 * 1 2 3 25 25 H 1.09003 * 109.47031 * 75.17046 * 1 2 3 26 26 H 1.09001 * 109.47033 * 240.00142 * 2 1 3 27 27 H 1.08999 * 109.46915 * 120.00379 * 2 1 3 28 28 H 0.96994 * 119.99980 * 179.97438 * 7 6 4 29 29 H 1.08004 * 126.45586 * 0.02958 * 15 14 12 30 30 H 1.08006 * 126.06117 * 179.69952 * 16 15 14 31 31 H 1.08005 * 125.55602 * 179.97438 * 17 16 15 32 32 H 1.08993 * 112.91209 * 185.99592 * 19 18 17 33 33 H 1.09004 * 113.61159 * 105.47676 * 20 19 18 34 34 H 1.08991 * 113.62159 * 334.56972 * 20 19 18 35 35 H 1.09000 * 113.61186 * 139.98665 * 21 20 19 36 36 H 1.08995 * 113.61219 * 270.80539 * 21 20 19 37 37 H 1.08996 * 113.61874 * 89.15913 * 22 21 20 38 38 H 1.09004 * 113.61001 * 220.06213 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4165 1.9664 -1.1716 5 1 3.0877 2.8122 -1.1519 6 6 1.9567 1.4720 -2.3868 7 7 0.8164 0.8215 -2.4423 8 14 2.9602 1.7324 -3.9407 9 1 3.9013 0.5975 -4.1182 10 1 2.0494 1.8078 -5.1112 11 1 3.7273 2.9988 -3.8281 12 6 2.0757 2.0756 1.1537 13 8 2.4981 3.2174 1.1565 14 6 1.6296 1.4563 2.4047 15 6 0.9705 0.2503 2.5283 16 6 0.7319 0.0504 3.8911 17 6 1.2427 1.1105 4.5627 18 7 1.7947 1.9701 3.6712 19 6 2.4506 3.2380 4.0003 20 6 3.5880 3.0952 5.0253 21 6 3.0802 4.4039 5.6536 22 6 1.7019 4.0636 5.0625 23 1 -0.3634 -0.9919 0.2689 24 1 -0.3633 0.7289 0.7245 25 1 -0.3633 0.2630 -0.9935 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.4955 0.4769 -3.2902 29 1 0.6881 -0.4122 1.7234 30 1 0.2289 -0.7983 4.3307 31 1 1.2147 1.2482 5.6336 32 1 2.7281 3.8138 3.1174 33 1 4.5830 3.1783 4.5878 34 1 3.4822 2.2281 5.6771 35 1 3.1006 4.4016 6.7434 36 1 3.5310 5.2983 5.2236 37 1 1.0794 3.4616 5.7245 38 1 1.1764 4.9272 4.6550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700873256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:56 Heat of formation + Delta-G solvation = 55.596397 kcal Electronic energy + Delta-G solvation = -20457.302796 eV Core-core repulsion = 17495.351576 eV Total energy + Delta-G solvation = -2961.951220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.45330 -40.11307 -38.91416 -37.13236 -34.15668 -32.22545 -31.43107 -29.90079 -26.91523 -26.69929 -25.82725 -24.16486 -22.88779 -21.88226 -20.90294 -19.42634 -18.96540 -18.24830 -17.27073 -16.53398 -16.24465 -16.02484 -15.91301 -15.48531 -14.99664 -14.75442 -14.27211 -13.85084 -13.81705 -13.52776 -13.24956 -13.13679 -12.99082 -12.86793 -12.71813 -12.38049 -12.16079 -12.10217 -11.82903 -11.66461 -11.50257 -11.39634 -10.96244 -10.34141 -9.71603 -9.39860 -8.97595 -8.31637 -5.94188 0.75577 1.41027 1.42602 1.53371 1.98911 2.00893 2.31376 2.53214 3.09831 3.12770 3.41793 3.60276 3.85043 3.89883 4.02009 4.26269 4.42394 4.46654 4.63187 4.64608 4.65633 4.76699 4.79531 4.91089 4.92515 4.96724 5.00437 5.08858 5.28099 5.34970 5.38668 5.44022 5.49859 5.95098 6.04365 6.16764 6.25819 6.56287 6.62174 7.15236 7.41109 8.02913 8.61326 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027363 B = 0.006309 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.019405 B = 4436.819263 C = 5217.112653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 N -0.430 5.430 4 C -0.356 4.356 5 H 0.069 0.931 6 C 0.011 3.989 7 N -0.861 5.861 8 Si 0.987 3.013 9 H -0.264 1.264 10 H -0.270 1.270 11 H -0.279 1.279 12 C 0.489 3.511 13 O -0.647 6.647 14 C -0.063 4.063 15 C -0.186 4.186 16 C -0.220 4.220 17 C 0.008 3.992 18 N -0.406 5.406 19 C 0.070 3.930 20 C -0.138 4.138 21 C -0.117 4.117 22 C -0.137 4.137 23 H 0.072 0.928 24 H 0.029 0.971 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.277 0.723 29 H 0.175 0.825 30 H 0.167 0.833 31 H 0.200 0.800 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 -2.534 13.925 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.145 5.145 4 C -0.484 4.484 5 H 0.086 0.914 6 C -0.193 4.193 7 N -0.497 5.497 8 Si 0.810 3.190 9 H -0.189 1.189 10 H -0.195 1.195 11 H -0.204 1.204 12 C 0.281 3.719 13 O -0.539 6.539 14 C -0.177 4.177 15 C -0.212 4.212 16 C -0.244 4.244 17 C -0.126 4.126 18 N -0.079 5.079 19 C -0.032 4.032 20 C -0.177 4.177 21 C -0.155 4.155 22 C -0.175 4.175 23 H 0.091 0.909 24 H 0.048 0.952 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.191 0.809 30 H 0.185 0.815 31 H 0.217 0.783 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.331 -1.779 13.783 13.901 hybrid contribution 0.371 0.369 -1.286 1.388 sum 0.703 -1.409 12.497 12.596 Atomic orbital electron populations 1.22459 0.95011 1.00211 1.04497 1.21835 0.95811 0.82082 1.00821 1.43604 1.53991 1.11658 1.05284 1.19522 1.27589 1.17583 0.83665 0.91353 1.26052 0.95585 0.96371 1.01340 1.69962 1.15971 1.35907 1.27899 0.85053 0.78344 0.78756 0.76820 1.18907 1.19512 1.20434 1.17522 0.84718 0.85339 0.84332 1.90471 1.55526 1.20490 1.87365 1.20297 1.12796 0.98808 0.85765 1.22877 1.02746 0.96161 0.99432 1.21168 1.09037 1.01531 0.92625 1.22399 1.02035 0.91485 0.96660 1.44195 1.42055 1.17107 1.04527 1.23729 0.96386 0.83786 0.99267 1.23409 0.97137 1.00401 0.96706 1.22626 0.94221 0.96487 1.02145 1.23440 0.98281 0.99448 0.96313 0.90898 0.95165 0.88904 0.91893 0.90412 0.91232 0.80863 0.81522 0.78332 0.88046 0.91704 0.87842 0.87418 0.89687 0.87528 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.06 8.02 71.98 0.58 -6.48 16 2 C 0.12 5.45 4.80 86.38 0.41 5.87 16 3 N -0.43 -23.88 2.63 -640.19 -1.68 -25.56 16 4 C -0.36 -21.04 9.20 84.09 0.77 -20.27 16 5 H 0.07 4.37 7.48 -2.91 -0.02 4.35 16 6 C 0.01 0.59 4.70 84.94 0.40 0.99 16 7 N -0.86 -44.62 8.89 21.68 0.19 -44.43 16 8 Si 0.99 42.29 29.62 68.60 2.03 44.32 16 9 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.49 27.30 7.40 86.41 0.64 27.94 16 13 O -0.65 -39.97 14.18 -4.48 -0.06 -40.03 16 14 C -0.06 -2.89 6.59 40.33 0.27 -2.63 16 15 C -0.19 -7.20 7.33 22.59 0.17 -7.04 16 16 C -0.22 -6.67 10.81 22.01 0.24 -6.43 16 17 C 0.01 0.24 9.96 83.48 0.83 1.07 16 18 N -0.41 -15.16 2.97 -485.58 -1.44 -16.60 16 19 C 0.07 2.40 4.43 45.58 0.20 2.60 16 20 C -0.14 -3.45 7.73 31.12 0.24 -3.21 16 21 C -0.12 -2.26 8.08 31.12 0.25 -2.01 16 22 C -0.14 -3.33 7.67 31.18 0.24 -3.09 16 23 H 0.07 2.52 7.83 -2.39 -0.02 2.50 16 24 H 0.03 1.36 6.32 -2.39 -0.02 1.34 16 25 H 0.09 4.48 5.33 -2.39 -0.01 4.47 16 26 H 0.06 3.04 6.69 -2.39 -0.02 3.03 16 27 H 0.08 3.27 5.17 -2.39 -0.01 3.26 16 28 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 29 H 0.17 6.49 2.89 -2.91 -0.01 6.48 16 30 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 31 H 0.20 3.76 7.65 -2.91 -0.02 3.74 16 32 H 0.10 4.49 5.66 -2.39 -0.01 4.47 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 2.18 7.72 -2.39 -0.02 2.17 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 2.13 7.13 -2.39 -0.02 2.11 16 38 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -71.62 295.11 5.35 -66.27 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 1.07 Total: 28.72 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 5.24 Total: -12.69 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -2.93 Total: -86.59 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.06 Total: -40.03 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -71.62 5.35 -66.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700873256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.871 kcal (2) G-P(sol) polarization free energy of solvation -71.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds