Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47256 * 2 1 4 4 C 1.50701 * 109.47343 * 120.00167 * 2 1 3 5 5 H 1.07994 * 120.00454 * 119.99809 * 4 2 1 6 6 C 1.37879 * 119.99459 * 299.99857 * 4 2 1 7 7 N 1.31509 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99744 * 179.97438 * 6 4 2 9 9 H 1.48511 * 109.47042 * 60.00256 * 8 6 4 10 10 H 1.48503 * 109.47412 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47600 * 300.00349 * 8 6 4 12 12 N 1.46503 * 109.47160 * 239.99780 * 2 1 3 13 13 C 1.34784 * 119.99814 * 85.00001 * 12 2 1 14 14 O 1.21696 * 119.99987 * 354.94667 * 13 12 2 15 15 C 1.46680 * 119.99696 * 174.94101 * 13 12 2 16 16 C 1.37870 * 126.23609 * 5.28955 * 15 13 12 17 17 C 1.39835 * 107.08458 * 179.84399 * 16 15 13 18 18 C 1.35448 * 107.86255 * 0.41686 * 17 16 15 19 19 N 1.35532 * 108.87426 * 359.74126 * 18 17 16 20 20 C 1.46498 * 125.67689 * 180.02562 * 19 18 17 21 21 C 1.53789 * 113.61359 * 42.38996 * 20 19 18 22 22 C 1.53787 * 87.08007 * 220.01544 * 21 20 19 23 23 C 1.53781 * 113.61746 * 304.89066 * 20 19 18 24 24 H 1.08997 * 109.46636 * 60.00392 * 1 2 3 25 25 H 1.08998 * 109.47016 * 299.99732 * 1 2 3 26 26 H 1.09000 * 109.46538 * 180.02562 * 1 2 3 27 27 H 0.97002 * 120.00357 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00294 * 264.99976 * 12 2 1 29 29 H 1.08001 * 126.45275 * 359.96143 * 16 15 13 30 30 H 1.08000 * 126.06665 * 180.13509 * 17 16 15 31 31 H 1.08008 * 125.56284 * 179.70386 * 18 17 16 32 32 H 1.09000 * 112.85164 * 173.69382 * 20 19 18 33 33 H 1.08997 * 113.61373 * 334.56215 * 21 20 19 34 34 H 1.09001 * 113.61183 * 105.46931 * 21 20 19 35 35 H 1.08996 * 113.61550 * 270.88360 * 22 21 20 36 36 H 1.09000 * 113.68939 * 139.98810 * 22 21 20 37 37 H 1.08989 * 113.61637 * 254.53156 * 23 20 19 38 38 H 1.08999 * 113.61445 * 25.35112 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.8065 -1.1208 4.0081 10 1 1.8260 -0.4205 5.2205 11 1 1.8260 -2.5202 4.0078 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.7718 1.1367 -2.4363 15 6 2.7396 -0.6786 -3.5253 16 6 3.1120 -2.0033 -3.6109 17 6 3.6245 -2.2038 -4.8964 18 6 3.5662 -1.0220 -5.5558 19 7 3.0305 -0.0872 -4.7336 20 6 2.7990 1.3187 -5.0746 21 6 2.2215 1.5234 -6.4852 22 6 3.1565 2.7385 -6.6061 23 6 4.0590 2.0480 -5.5699 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 0.7090 1.1615 3.4843 28 1 2.2491 -1.6318 -1.1526 29 1 3.0228 -2.7466 -2.8324 30 1 4.0039 -3.1344 -5.2916 31 1 3.8938 -0.8523 -6.5709 32 1 2.2587 1.8593 -4.2975 33 1 2.4626 0.7164 -7.1770 34 1 1.1633 1.7846 -6.4900 35 1 2.7131 3.6678 -6.2487 36 1 3.6179 2.8399 -7.5884 37 1 4.4841 2.7326 -4.8361 38 1 4.8030 1.3842 -6.0103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700873477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = 25.241742 kcal Electronic energy + Delta-G solvation = -19647.717085 eV Core-core repulsion = 16684.449589 eV Total energy + Delta-G solvation = -2963.267496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33671 -38.54556 -37.96793 -34.78523 -32.46767 -31.06678 -29.80050 -27.93276 -25.86912 -25.23940 -25.00230 -22.69718 -20.93351 -20.42581 -19.24592 -18.87828 -17.93833 -16.30528 -15.56076 -15.35533 -15.10184 -14.84862 -14.26568 -13.98543 -13.60363 -13.23194 -12.96661 -12.74056 -12.42379 -12.17347 -12.10748 -12.04692 -11.65139 -11.29397 -11.08649 -10.94307 -10.74442 -10.67206 -10.60786 -10.29796 -10.21362 -9.11792 -9.03992 -8.54121 -8.49888 -8.11604 -7.75960 -6.11152 -4.20393 1.87784 2.95951 2.98969 3.27581 3.32425 3.34198 4.00732 4.16773 4.28764 4.40975 4.42908 4.70617 4.75672 5.10491 5.21256 5.37004 5.43284 5.43844 5.52740 5.61287 5.66329 5.71303 5.78562 5.86266 6.18063 6.28547 6.45526 6.83722 6.99418 7.02221 7.16360 7.28939 7.45251 7.47270 7.59244 7.71794 7.93046 8.15483 8.67050 8.78216 9.10562 9.46934 10.94865 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029764 B = 0.004688 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.504348 B = 5971.652088 C = 6465.391683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.693 5.693 13 C 0.573 3.427 14 O -0.566 6.566 15 C -0.033 4.033 16 C -0.153 4.153 17 C -0.209 4.209 18 C 0.000 4.000 19 N -0.398 5.398 20 C 0.095 3.905 21 C -0.147 4.147 22 C -0.136 4.136 23 C -0.148 4.148 24 H 0.016 0.984 25 H 0.090 0.910 26 H 0.027 0.973 27 H 0.265 0.735 28 H 0.392 0.608 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -1.667 -16.768 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.340 5.340 13 C 0.359 3.641 14 O -0.448 6.448 15 C -0.148 4.148 16 C -0.178 4.178 17 C -0.233 4.233 18 C -0.134 4.134 19 N -0.070 5.070 20 C -0.006 4.006 21 C -0.185 4.185 22 C -0.174 4.174 23 C -0.186 4.186 24 H 0.035 0.965 25 H 0.109 0.891 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.225 0.775 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.177 0.823 32 H 0.168 0.832 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.253 -0.332 -16.674 17.211 hybrid contribution 0.467 -1.032 0.817 1.396 sum 4.720 -1.363 -15.857 16.601 Atomic orbital electron populations 1.22076 0.98319 0.99227 1.00955 1.18777 0.91176 0.93816 0.79608 0.93411 1.21183 1.32528 1.13307 0.90237 0.91998 1.24877 0.94778 0.94949 0.99031 1.69893 1.35834 1.22437 1.23992 0.86491 0.79180 0.79614 0.81716 1.20150 1.21143 1.20108 1.46275 1.64369 1.13629 1.09699 1.17070 0.78892 0.85785 0.82327 1.90659 1.52259 1.17765 1.84096 1.20565 1.11703 0.93606 0.88880 1.21347 1.04115 0.94172 0.98215 1.20723 1.09575 0.97628 0.95359 1.21714 1.05590 0.88926 0.97188 1.44019 1.44510 1.08470 1.09998 1.23661 0.98814 0.79360 0.98809 1.23401 1.00629 0.98721 0.95711 1.22682 0.97567 0.97603 0.99573 1.23409 0.96648 0.99555 0.98966 0.96498 0.89125 0.95400 0.92522 0.77519 0.84042 0.84515 0.82334 0.83176 0.89510 0.90367 0.89411 0.90636 0.90328 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.27 6.94 2.52 -69.08 -0.17 6.77 16 3 H 0.05 1.41 7.65 -51.93 -0.40 1.02 16 4 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.69 -15.21 5.05 -56.24 -0.28 -15.50 16 13 C 0.57 12.37 7.73 -12.85 -0.10 12.27 16 14 O -0.57 -13.68 14.13 5.19 0.07 -13.60 16 15 C -0.03 -0.60 6.88 -81.98 -0.56 -1.17 16 16 C -0.15 -2.37 10.36 -39.12 -0.41 -2.77 16 17 C -0.21 -2.77 10.81 -39.98 -0.43 -3.20 16 18 C 0.00 0.00 9.96 -16.91 -0.17 -0.17 16 19 N -0.40 -6.14 2.96 -104.95 -0.31 -6.45 16 20 C 0.10 1.33 4.42 -67.11 -0.30 1.04 16 21 C -0.15 -1.54 7.66 -25.91 -0.20 -1.74 16 22 C -0.14 -1.23 8.08 -25.91 -0.21 -1.44 16 23 C -0.15 -1.64 7.73 -25.92 -0.20 -1.84 16 24 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.39 7.58 7.44 -40.82 -0.30 7.28 16 29 H 0.14 1.96 7.45 -52.49 -0.39 1.57 16 30 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.16 1.50 7.63 -52.48 -0.40 1.10 16 32 H 0.15 2.57 5.64 -51.93 -0.29 2.28 16 33 H 0.09 0.81 7.10 -51.93 -0.37 0.45 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.91 8.14 -51.94 -0.42 0.49 16 38 H 0.09 0.88 7.73 -51.93 -0.40 0.48 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -30.62 313.40 -8.36 -38.98 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.37 Total: 9.03 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.80 Total: -8.54 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.03 Total: -46.31 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.07 Total: -13.60 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.62 -8.36 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700873477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.220 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds