Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47256 * 2 1 4 4 C 1.50701 * 109.47343 * 120.00167 * 2 1 3 5 5 H 1.07994 * 120.00454 * 119.99809 * 4 2 1 6 6 C 1.37879 * 119.99459 * 299.99857 * 4 2 1 7 7 N 1.31509 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99744 * 179.97438 * 6 4 2 9 9 H 1.48511 * 109.47042 * 60.00256 * 8 6 4 10 10 H 1.48503 * 109.47412 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47600 * 300.00349 * 8 6 4 12 12 N 1.46503 * 109.47160 * 239.99780 * 2 1 3 13 13 C 1.34784 * 119.99814 * 85.00001 * 12 2 1 14 14 O 1.21696 * 119.99987 * 354.94667 * 13 12 2 15 15 C 1.46680 * 119.99696 * 174.94101 * 13 12 2 16 16 C 1.37870 * 126.23609 * 5.28955 * 15 13 12 17 17 C 1.39835 * 107.08458 * 179.84399 * 16 15 13 18 18 C 1.35448 * 107.86255 * 0.41686 * 17 16 15 19 19 N 1.35532 * 108.87426 * 359.74126 * 18 17 16 20 20 C 1.46498 * 125.67689 * 180.02562 * 19 18 17 21 21 C 1.53789 * 113.61359 * 42.38996 * 20 19 18 22 22 C 1.53787 * 87.08007 * 220.01544 * 21 20 19 23 23 C 1.53781 * 113.61746 * 304.89066 * 20 19 18 24 24 H 1.08997 * 109.46636 * 60.00392 * 1 2 3 25 25 H 1.08998 * 109.47016 * 299.99732 * 1 2 3 26 26 H 1.09000 * 109.46538 * 180.02562 * 1 2 3 27 27 H 0.97002 * 120.00357 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00294 * 264.99976 * 12 2 1 29 29 H 1.08001 * 126.45275 * 359.96143 * 16 15 13 30 30 H 1.08000 * 126.06665 * 180.13509 * 17 16 15 31 31 H 1.08008 * 125.56284 * 179.70386 * 18 17 16 32 32 H 1.09000 * 112.85164 * 173.69382 * 20 19 18 33 33 H 1.08997 * 113.61373 * 334.56215 * 21 20 19 34 34 H 1.09001 * 113.61183 * 105.46931 * 21 20 19 35 35 H 1.08996 * 113.61550 * 270.88360 * 22 21 20 36 36 H 1.09000 * 113.68939 * 139.98810 * 22 21 20 37 37 H 1.08989 * 113.61637 * 254.53156 * 23 20 19 38 38 H 1.08999 * 113.61445 * 25.35112 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.8065 -1.1208 4.0081 10 1 1.8260 -0.4205 5.2205 11 1 1.8260 -2.5202 4.0078 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.7718 1.1367 -2.4363 15 6 2.7396 -0.6786 -3.5253 16 6 3.1120 -2.0033 -3.6109 17 6 3.6245 -2.2038 -4.8964 18 6 3.5662 -1.0220 -5.5558 19 7 3.0305 -0.0872 -4.7336 20 6 2.7990 1.3187 -5.0746 21 6 2.2215 1.5234 -6.4852 22 6 3.1565 2.7385 -6.6061 23 6 4.0590 2.0480 -5.5699 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 0.7090 1.1615 3.4843 28 1 2.2491 -1.6318 -1.1526 29 1 3.0228 -2.7466 -2.8324 30 1 4.0039 -3.1344 -5.2916 31 1 3.8938 -0.8523 -6.5709 32 1 2.2587 1.8593 -4.2975 33 1 2.4626 0.7164 -7.1770 34 1 1.1633 1.7846 -6.4900 35 1 2.7131 3.6678 -6.2487 36 1 3.6179 2.8399 -7.5884 37 1 4.4841 2.7326 -4.8361 38 1 4.8030 1.3842 -6.0103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700873477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = 6.608974 kcal Electronic energy + Delta-G solvation = -19648.525063 eV Core-core repulsion = 16684.449589 eV Total energy + Delta-G solvation = -2964.075474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.48797 -40.12585 -39.03490 -36.73714 -34.40992 -32.21715 -31.48507 -29.46648 -27.36208 -26.71842 -25.96773 -24.30445 -22.30359 -21.78492 -20.80358 -20.09833 -19.15791 -18.08045 -17.15387 -16.82828 -16.47127 -16.23168 -15.91607 -15.10636 -14.95628 -14.86295 -14.46881 -14.13473 -13.72127 -13.55840 -13.24261 -13.20146 -13.01337 -12.96972 -12.84999 -12.73896 -12.29298 -12.15505 -12.15283 -11.55870 -11.53060 -11.15845 -10.79494 -10.59782 -9.88810 -9.59960 -9.08548 -8.18920 -6.36963 0.56698 1.44946 1.47625 1.55341 1.80831 1.89646 2.37514 2.49529 2.70127 3.11542 3.38851 3.56600 3.81799 3.86351 3.94924 4.17089 4.37869 4.52305 4.62887 4.63836 4.70777 4.74231 4.89555 4.91925 4.94499 4.99107 5.05272 5.21594 5.29690 5.35389 5.42274 5.57795 5.62989 5.81892 5.97653 6.05874 6.10735 6.44023 6.69069 6.91075 7.28709 7.46484 8.87558 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029764 B = 0.004688 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.504348 B = 5971.652088 C = 6465.391683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.275 3.725 3 H -0.002 1.002 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.263 1.263 12 N -0.693 5.693 13 C 0.568 3.432 14 O -0.605 6.605 15 C -0.087 4.087 16 C -0.142 4.142 17 C -0.214 4.214 18 C 0.023 3.977 19 N -0.402 5.402 20 C 0.070 3.930 21 C -0.135 4.135 22 C -0.121 4.121 23 C -0.142 4.142 24 H 0.010 0.990 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.266 0.734 28 H 0.405 0.595 29 H 0.152 0.848 30 H 0.171 0.829 31 H 0.203 0.797 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -3.751 -18.910 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.172 3.828 3 H 0.016 0.984 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.188 1.188 12 N -0.340 5.340 13 C 0.357 3.643 14 O -0.490 6.490 15 C -0.200 4.200 16 C -0.169 4.169 17 C -0.237 4.237 18 C -0.113 4.113 19 N -0.074 5.074 20 C -0.032 4.032 21 C -0.173 4.173 22 C -0.159 4.159 23 C -0.180 4.180 24 H 0.029 0.971 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.240 0.760 29 H 0.170 0.830 30 H 0.188 0.812 31 H 0.220 0.780 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.874 -2.438 -18.833 19.877 hybrid contribution -0.014 -0.363 1.382 1.429 sum 5.859 -2.801 -17.450 18.620 Atomic orbital electron populations 1.21892 0.98192 0.99470 0.99570 1.18379 0.91235 0.91734 0.81428 0.98430 1.21490 1.32879 1.13723 0.90668 0.90845 1.25814 0.94746 0.95559 1.02320 1.70045 1.36853 1.23878 1.24779 0.85350 0.78636 0.78727 0.77337 1.19561 1.21000 1.18760 1.45986 1.64913 1.14111 1.09018 1.17636 0.78102 0.85368 0.83158 1.90637 1.53892 1.19574 1.84913 1.20135 1.15819 0.94878 0.89184 1.21674 1.02464 0.93077 0.99693 1.21140 1.09260 0.99194 0.94142 1.22505 1.02588 0.87932 0.98228 1.44234 1.44400 1.09269 1.09485 1.23763 1.00989 0.78940 0.99469 1.23413 1.00535 1.00003 0.93317 1.22646 0.96285 0.96688 1.00275 1.23433 0.96048 0.99355 0.99126 0.97076 0.91194 0.94124 0.92440 0.76002 0.82993 0.81190 0.78012 0.87594 0.87241 0.91018 0.89777 0.87582 0.91836 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 2 C 0.28 15.01 2.52 44.25 0.11 15.12 16 3 H 0.00 -0.14 7.65 -2.39 -0.02 -0.16 16 4 C -0.55 -30.00 8.73 25.60 0.22 -29.77 16 5 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -53.44 11.32 21.45 0.24 -53.19 16 8 Si 0.98 42.55 29.54 68.60 2.03 44.58 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 12 N -0.69 -31.72 5.05 -450.05 -2.27 -34.00 16 13 C 0.57 25.89 7.73 86.45 0.67 26.55 16 14 O -0.61 -31.68 14.13 -4.34 -0.06 -31.75 16 15 C -0.09 -3.17 6.88 40.35 0.28 -2.89 16 16 C -0.14 -4.19 10.36 22.57 0.23 -3.96 16 17 C -0.21 -4.89 10.81 22.01 0.24 -4.65 16 18 C 0.02 0.50 9.96 83.48 0.83 1.33 16 19 N -0.40 -12.00 2.96 -485.94 -1.44 -13.44 16 20 C 0.07 1.96 4.42 45.52 0.20 2.17 16 21 C -0.13 -2.57 7.66 31.13 0.24 -2.33 16 22 C -0.12 -1.91 8.08 31.12 0.25 -1.66 16 23 C -0.14 -2.95 7.73 31.12 0.24 -2.71 16 24 H 0.01 0.54 8.09 -2.39 -0.02 0.53 16 25 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 26 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.40 15.99 7.44 -92.71 -0.69 15.30 16 29 H 0.15 3.97 7.45 -2.91 -0.02 3.95 16 30 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 31 H 0.20 2.58 7.63 -2.91 -0.02 2.55 16 32 H 0.11 3.95 5.64 -2.39 -0.01 3.93 16 33 H 0.11 1.59 7.10 -2.39 -0.02 1.57 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.78 7.73 -2.39 -0.02 1.77 16 Total: -1.00 -70.64 313.40 3.50 -67.14 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.37 Total: 28.52 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.63 Total: -7.86 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -3.47 Total: -100.63 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.06 Total: -31.75 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.64 3.50 -67.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700873477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.749 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds