Wall clock time and date at job start Mon Mar 30 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46772 * 2 1 4 4 N 1.46495 * 109.47185 * 119.99803 * 2 1 3 5 5 C 1.36878 * 119.99973 * 98.46889 * 4 2 1 6 6 H 1.07992 * 120.00264 * 149.25910 * 5 4 2 7 7 C 1.39018 * 119.99752 * 329.25750 * 5 4 2 8 8 N 1.31395 * 119.99858 * 359.73471 * 7 5 4 9 9 Si 1.86798 * 119.99946 * 179.74094 * 7 5 4 10 10 H 1.48500 * 109.46951 * 89.99762 * 9 7 5 11 11 H 1.48496 * 109.46890 * 209.99908 * 9 7 5 12 12 H 1.48496 * 109.47077 * 329.99853 * 9 7 5 13 13 C 1.34776 * 120.00149 * 278.46144 * 4 2 1 14 14 O 1.21741 * 120.00285 * 182.90855 * 13 4 2 15 15 C 1.46550 * 120.00117 * 2.91198 * 13 4 2 16 16 C 1.38002 * 126.23991 * 25.91196 * 15 13 4 17 17 C 1.39804 * 107.08086 * 180.29271 * 16 15 13 18 18 C 1.35479 * 107.87955 * 359.73950 * 17 16 15 19 19 N 1.35584 * 108.88596 * 0.02562 * 18 17 16 20 20 C 1.46498 * 125.68398 * 180.02562 * 19 18 17 21 21 C 1.53003 * 117.49489 * 294.54756 * 20 19 18 22 22 C 1.52997 * 59.99950 * 107.49297 * 21 20 19 23 23 H 1.08998 * 109.46748 * 283.84702 * 1 2 3 24 24 H 1.09000 * 109.47318 * 43.84625 * 1 2 3 25 25 H 1.09002 * 109.46581 * 163.84808 * 1 2 3 26 26 H 1.09002 * 109.46918 * 240.00368 * 2 1 3 27 27 H 1.09004 * 109.46541 * 224.65425 * 3 2 1 28 28 H 1.09002 * 109.46682 * 344.64961 * 3 2 1 29 29 H 1.08999 * 109.47023 * 104.65045 * 3 2 1 30 30 H 0.96998 * 119.99783 * 180.02562 * 8 7 5 31 31 H 1.08005 * 126.45556 * 0.03394 * 16 15 13 32 32 H 1.08002 * 126.05786 * 179.77564 * 17 16 15 33 33 H 1.08003 * 125.55896 * 180.02562 * 18 17 16 34 34 H 1.09003 * 115.56712 * 148.86449 * 20 19 18 35 35 H 1.09001 * 117.50141 * 359.97438 * 21 20 19 36 36 H 1.09004 * 117.49692 * 214.97759 * 21 20 19 37 37 H 1.09001 * 117.50446 * 107.49282 * 22 21 20 38 38 H 1.09000 * 117.49607 * 252.48373 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.4111 -1.9995 1.1184 6 1 3.1881 -2.3698 1.7706 7 6 1.8097 -2.8521 0.1997 8 7 0.8607 -2.4028 -0.5902 9 14 2.3507 -4.6366 0.0885 10 1 1.5325 -5.4604 1.0143 11 1 2.1664 -5.1239 -1.3021 12 1 3.7831 -4.7440 0.4649 13 6 2.0811 -0.0370 2.3732 14 8 2.5363 -0.5941 3.3553 15 6 1.6013 1.3443 2.4709 16 6 0.6469 1.9351 1.6680 17 6 0.5027 3.2552 2.1051 18 6 1.3475 3.4429 3.1475 19 7 2.0187 2.2884 3.3818 20 6 3.0240 2.0814 4.4270 21 6 4.3294 2.8721 4.3181 22 6 3.2970 3.2430 5.3847 23 1 -0.3633 0.2460 0.9978 24 1 -0.3634 0.7411 -0.7119 25 1 -0.3632 -0.9871 -0.2859 26 1 1.8934 -0.5138 -0.8900 27 1 2.8503 1.5414 -0.7223 28 1 1.2267 2.1154 -0.2721 29 1 2.4061 1.6985 0.9942 30 1 0.4409 -2.9979 -1.2310 31 1 0.1151 1.4671 0.8527 32 1 -0.1644 3.9942 1.6864 33 1 1.4669 4.3622 3.7015 34 1 3.0800 1.0711 4.8325 35 1 4.4403 3.5460 3.4686 36 1 5.2440 2.3821 4.6520 37 1 3.5324 2.9970 6.4201 38 1 2.7288 4.1614 5.2372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701225455.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:33 Heat of formation + Delta-G solvation = 132.868993 kcal Electronic energy + Delta-G solvation = -20941.192093 eV Core-core repulsion = 17982.591665 eV Total energy + Delta-G solvation = -2958.600429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.43646 -38.43191 -36.70801 -35.48863 -32.83880 -30.73471 -29.83832 -28.42399 -26.07842 -25.03319 -22.70270 -22.49516 -21.63292 -21.06675 -19.32826 -18.14685 -17.04274 -16.45469 -15.42122 -15.22918 -14.57816 -14.22464 -14.08659 -13.92827 -13.35387 -13.17636 -12.71789 -12.39916 -12.19715 -11.96747 -11.77496 -11.57841 -11.21247 -11.14282 -11.00406 -10.68465 -10.49737 -10.39136 -10.33239 -10.18476 -9.97215 -9.35079 -8.79867 -8.41220 -7.92745 -7.54075 -7.02098 -6.23152 -3.94984 2.28993 3.13695 3.21134 3.25578 3.30771 3.41236 3.82968 4.12698 4.38897 4.66790 4.82686 4.90810 5.09029 5.13329 5.35110 5.55316 5.74856 5.79120 5.89709 6.00059 6.03012 6.07048 6.19013 6.30912 6.48212 6.60380 6.64955 6.73456 6.88447 6.99993 7.07693 7.41266 7.43972 7.48266 7.68343 7.85046 7.99643 8.20797 8.58332 9.18308 9.40449 10.00786 10.69345 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.007208 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.001538 B = 3883.597997 C = 4618.577702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.156 3.844 3 C -0.199 4.199 4 N -0.421 5.421 5 C -0.297 4.297 6 H 0.096 0.904 7 C 0.032 3.968 8 N -0.875 5.875 9 Si 0.931 3.069 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.515 3.485 14 O -0.597 6.597 15 C -0.013 4.013 16 C -0.190 4.190 17 C -0.218 4.218 18 C -0.024 4.024 19 N -0.389 5.389 20 C 0.067 3.933 21 C -0.183 4.183 22 C -0.181 4.181 23 H 0.055 0.945 24 H 0.037 0.963 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.268 0.732 31 H 0.196 0.804 32 H 0.132 0.868 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.934 10.226 2.921 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.052 3.948 3 C -0.256 4.256 4 N -0.139 5.139 5 C -0.426 4.426 6 H 0.114 0.886 7 C -0.170 4.170 8 N -0.514 5.514 9 Si 0.757 3.243 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.304 3.696 14 O -0.484 6.484 15 C -0.126 4.126 16 C -0.213 4.213 17 C -0.243 4.243 18 C -0.157 4.157 19 N -0.063 5.063 20 C -0.037 4.037 21 C -0.221 4.221 22 C -0.218 4.218 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.136 0.864 26 H 0.116 0.884 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.212 0.788 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.318 9.764 3.465 10.444 hybrid contribution 0.147 -0.553 -0.164 0.595 sum 1.465 9.211 3.301 9.893 Atomic orbital electron populations 1.22973 0.96459 1.05218 0.99546 1.20859 0.94178 0.89691 0.90073 1.23819 1.00291 0.97984 1.03463 1.43419 1.54689 1.10708 1.05051 1.19611 1.18303 0.84228 1.20410 0.88624 1.25469 0.95044 0.99993 0.96497 1.69774 1.24314 1.35370 1.21959 0.85859 0.79138 0.81947 0.77317 1.20304 1.20869 1.19538 1.16886 0.84511 0.84380 0.83839 1.90581 1.51801 1.69571 1.36427 1.20509 1.04029 0.92484 0.95586 1.23544 1.00625 0.94986 1.02149 1.20723 1.04816 0.97820 1.00898 1.21610 1.00630 0.90500 1.02982 1.43315 1.29650 1.09475 1.23825 1.22232 0.90313 0.99138 0.91975 1.23408 0.94012 1.03495 1.01147 1.23338 1.03010 0.98996 0.96484 0.92646 0.94456 0.86419 0.88351 0.95206 0.91448 0.89211 0.92186 0.78822 0.85051 0.82990 0.82899 0.88323 0.87599 0.87492 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.95 7.56 37.16 0.28 -3.66 16 2 C 0.16 3.58 2.33 -67.93 -0.16 3.42 16 3 C -0.20 -3.98 7.83 37.16 0.29 -3.69 16 4 N -0.42 -11.02 2.55 -109.24 -0.28 -11.30 16 5 C -0.30 -8.25 9.13 -15.01 -0.14 -8.39 16 6 H 0.10 2.76 7.51 -52.49 -0.39 2.37 16 7 C 0.03 0.83 5.25 -17.45 -0.09 0.74 16 8 N -0.87 -22.14 7.94 55.50 0.44 -21.70 16 9 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.51 13.39 6.95 -12.91 -0.09 13.31 16 14 O -0.60 -16.95 14.95 5.15 0.08 -16.87 16 15 C -0.01 -0.28 4.48 -81.98 -0.37 -0.65 16 16 C -0.19 -3.71 5.18 -39.08 -0.20 -3.91 16 17 C -0.22 -3.65 10.81 -39.98 -0.43 -4.08 16 18 C -0.02 -0.40 10.76 -16.88 -0.18 -0.58 16 19 N -0.39 -7.33 3.09 -114.40 -0.35 -7.69 16 20 C 0.07 1.12 6.35 -67.93 -0.43 0.69 16 21 C -0.18 -2.44 10.44 -26.73 -0.28 -2.72 16 22 C -0.18 -2.16 9.96 -26.73 -0.27 -2.42 16 23 H 0.06 1.21 5.42 -51.93 -0.28 0.93 16 24 H 0.04 0.68 7.50 -51.93 -0.39 0.29 16 25 H 0.12 2.77 5.28 -51.93 -0.27 2.50 16 26 H 0.10 2.43 6.60 -51.93 -0.34 2.09 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.21 5.76 -51.93 -0.30 0.91 16 29 H 0.09 1.93 3.57 -68.32 -0.24 1.68 16 30 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 31 H 0.20 3.76 1.98 -74.02 -0.15 3.62 16 32 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.15 1.92 6.88 -52.48 -0.36 1.56 16 34 H 0.15 2.94 6.67 -51.93 -0.35 2.59 16 35 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.10 1.07 6.71 -51.93 -0.35 0.72 16 LS Contribution 289.25 15.07 4.36 4.36 Total: -1.00 -29.89 289.25 -7.52 -37.41 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.68 Total: 12.25 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -2.07 Total: -11.96 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.19 Total: -40.69 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.08 Total: -16.87 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.89 -7.52 -37.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701225455.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.280 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds