Wall clock time and date at job start Mon Mar 30 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46772 * 2 1 4 4 N 1.46495 * 109.47185 * 119.99803 * 2 1 3 5 5 C 1.36878 * 119.99973 * 98.46889 * 4 2 1 6 6 H 1.07992 * 120.00264 * 149.25910 * 5 4 2 7 7 C 1.39018 * 119.99752 * 329.25750 * 5 4 2 8 8 N 1.31395 * 119.99858 * 359.73471 * 7 5 4 9 9 Si 1.86798 * 119.99946 * 179.74094 * 7 5 4 10 10 H 1.48500 * 109.46951 * 89.99762 * 9 7 5 11 11 H 1.48496 * 109.46890 * 209.99908 * 9 7 5 12 12 H 1.48496 * 109.47077 * 329.99853 * 9 7 5 13 13 C 1.34776 * 120.00149 * 278.46144 * 4 2 1 14 14 O 1.21741 * 120.00285 * 182.90855 * 13 4 2 15 15 C 1.46550 * 120.00117 * 2.91198 * 13 4 2 16 16 C 1.38002 * 126.23991 * 25.91196 * 15 13 4 17 17 C 1.39804 * 107.08086 * 180.29271 * 16 15 13 18 18 C 1.35479 * 107.87955 * 359.73950 * 17 16 15 19 19 N 1.35584 * 108.88596 * 0.02562 * 18 17 16 20 20 C 1.46498 * 125.68398 * 180.02562 * 19 18 17 21 21 C 1.53003 * 117.49489 * 294.54756 * 20 19 18 22 22 C 1.52997 * 59.99950 * 107.49297 * 21 20 19 23 23 H 1.08998 * 109.46748 * 283.84702 * 1 2 3 24 24 H 1.09000 * 109.47318 * 43.84625 * 1 2 3 25 25 H 1.09002 * 109.46581 * 163.84808 * 1 2 3 26 26 H 1.09002 * 109.46918 * 240.00368 * 2 1 3 27 27 H 1.09004 * 109.46541 * 224.65425 * 3 2 1 28 28 H 1.09002 * 109.46682 * 344.64961 * 3 2 1 29 29 H 1.08999 * 109.47023 * 104.65045 * 3 2 1 30 30 H 0.96998 * 119.99783 * 180.02562 * 8 7 5 31 31 H 1.08005 * 126.45556 * 0.03394 * 16 15 13 32 32 H 1.08002 * 126.05786 * 179.77564 * 17 16 15 33 33 H 1.08003 * 125.55896 * 180.02562 * 18 17 16 34 34 H 1.09003 * 115.56712 * 148.86449 * 20 19 18 35 35 H 1.09001 * 117.50141 * 359.97438 * 21 20 19 36 36 H 1.09004 * 117.49692 * 214.97759 * 21 20 19 37 37 H 1.09001 * 117.50446 * 107.49282 * 22 21 20 38 38 H 1.09000 * 117.49607 * 252.48373 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.4111 -1.9995 1.1184 6 1 3.1881 -2.3698 1.7706 7 6 1.8097 -2.8521 0.1997 8 7 0.8607 -2.4028 -0.5902 9 14 2.3507 -4.6366 0.0885 10 1 1.5325 -5.4604 1.0143 11 1 2.1664 -5.1239 -1.3021 12 1 3.7831 -4.7440 0.4649 13 6 2.0811 -0.0370 2.3732 14 8 2.5363 -0.5941 3.3553 15 6 1.6013 1.3443 2.4709 16 6 0.6469 1.9351 1.6680 17 6 0.5027 3.2552 2.1051 18 6 1.3475 3.4429 3.1475 19 7 2.0187 2.2884 3.3818 20 6 3.0240 2.0814 4.4270 21 6 4.3294 2.8721 4.3181 22 6 3.2970 3.2430 5.3847 23 1 -0.3633 0.2460 0.9978 24 1 -0.3634 0.7411 -0.7119 25 1 -0.3632 -0.9871 -0.2859 26 1 1.8934 -0.5138 -0.8900 27 1 2.8503 1.5414 -0.7223 28 1 1.2267 2.1154 -0.2721 29 1 2.4061 1.6985 0.9942 30 1 0.4409 -2.9979 -1.2310 31 1 0.1151 1.4671 0.8527 32 1 -0.1644 3.9942 1.6864 33 1 1.4669 4.3622 3.7015 34 1 3.0800 1.0711 4.8325 35 1 4.4403 3.5460 3.4686 36 1 5.2440 2.3821 4.6520 37 1 3.5324 2.9970 6.4201 38 1 2.7288 4.1614 5.2372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701225455.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:33 Heat of formation + Delta-G solvation = 115.505511 kcal Electronic energy + Delta-G solvation = -20941.945031 eV Core-core repulsion = 17982.591665 eV Total energy + Delta-G solvation = -2959.353366 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.91869 -40.13552 -38.11609 -37.23760 -34.70395 -32.62153 -31.21972 -30.02425 -27.73675 -26.96896 -23.98962 -23.62715 -23.26460 -22.69376 -20.88223 -19.63728 -18.62664 -18.23403 -17.23388 -16.65567 -16.18670 -15.90617 -15.88103 -15.43422 -15.01487 -14.76161 -14.21280 -13.86690 -13.77465 -13.51000 -13.33497 -13.00420 -12.89051 -12.80797 -12.50543 -12.30156 -12.23392 -12.04802 -11.75143 -11.64125 -11.49510 -11.15038 -10.65570 -10.35476 -9.52343 -9.23076 -8.54331 -8.20310 -6.02828 0.77628 1.39623 1.42315 1.51946 1.84755 2.02839 2.29344 2.52156 2.77239 3.06623 3.14106 3.55223 3.87225 3.94688 4.05259 4.23973 4.36277 4.47284 4.59281 4.65654 4.68329 4.78136 4.81981 4.94225 4.97444 5.05761 5.08682 5.15555 5.34575 5.39513 5.45202 5.50054 5.62122 5.99280 6.13340 6.20375 6.26618 6.57551 6.64710 7.17725 7.44951 8.04921 8.68741 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.007208 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.001538 B = 3883.597997 C = 4618.577702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.156 3.844 3 C -0.189 4.189 4 N -0.434 5.434 5 C -0.344 4.344 6 H 0.065 0.935 7 C 0.004 3.996 8 N -0.875 5.875 9 Si 0.991 3.009 10 H -0.278 1.278 11 H -0.263 1.263 12 H -0.275 1.275 13 C 0.501 3.499 14 O -0.643 6.643 15 C -0.066 4.066 16 C -0.180 4.180 17 C -0.223 4.223 18 C 0.000 4.000 19 N -0.390 5.390 20 C 0.014 3.986 21 C -0.175 4.175 22 C -0.136 4.136 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.275 0.725 31 H 0.193 0.807 32 H 0.168 0.832 33 H 0.199 0.801 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 13.139 2.733 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.053 3.947 3 C -0.245 4.245 4 N -0.151 5.151 5 C -0.472 4.472 6 H 0.083 0.917 7 C -0.198 4.198 8 N -0.513 5.513 9 Si 0.815 3.185 10 H -0.204 1.204 11 H -0.188 1.188 12 H -0.200 1.200 13 C 0.292 3.708 14 O -0.533 6.533 15 C -0.179 4.179 16 C -0.204 4.204 17 C -0.247 4.247 18 C -0.133 4.133 19 N -0.063 5.063 20 C -0.089 4.089 21 C -0.212 4.212 22 C -0.173 4.173 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.209 0.791 32 H 0.186 0.814 33 H 0.216 0.784 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.508 12.690 3.242 13.107 hybrid contribution 0.383 -1.399 -0.063 1.452 sum 0.891 11.290 3.180 11.763 Atomic orbital electron populations 1.22815 0.95238 1.04988 1.00018 1.20918 0.95131 0.90805 0.87859 1.23698 1.01269 0.96360 1.03216 1.43629 1.54841 1.10462 1.06200 1.19537 1.19676 0.86141 1.21877 0.91683 1.26156 0.94853 1.03283 0.95553 1.69901 1.23678 1.36448 1.21295 0.84976 0.78313 0.77185 0.78024 1.20380 1.18767 1.20006 1.17572 0.83685 0.86333 0.83172 1.90518 1.53835 1.71187 1.37803 1.19995 1.07065 0.91614 0.99189 1.23559 0.99236 0.96264 1.01354 1.21120 1.05542 0.96976 1.01061 1.22426 0.98131 0.90689 1.02101 1.43460 1.29938 1.09563 1.23343 1.22219 0.92799 0.99430 0.94463 1.23479 0.93235 1.02369 1.02155 1.23517 1.00277 0.96978 0.96553 0.93337 0.90827 0.88734 0.90806 0.94782 0.88664 0.90071 0.91496 0.79077 0.81416 0.78419 0.87047 0.87829 0.87031 0.85426 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.39 7.56 71.98 0.54 -6.84 16 2 C 0.16 7.32 2.33 45.00 0.10 7.43 16 3 C -0.19 -7.46 7.83 71.99 0.56 -6.90 16 4 N -0.43 -24.02 2.55 -617.71 -1.58 -25.60 16 5 C -0.34 -20.37 9.13 84.09 0.77 -19.60 16 6 H 0.07 4.11 7.51 -2.91 -0.02 4.09 16 7 C 0.00 0.20 5.25 84.95 0.45 0.64 16 8 N -0.88 -45.15 7.94 21.68 0.17 -44.98 16 9 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 13 C 0.50 27.70 6.95 86.41 0.60 28.30 16 14 O -0.64 -39.63 14.95 -4.48 -0.07 -39.70 16 15 C -0.07 -2.96 4.48 40.34 0.18 -2.77 16 16 C -0.18 -6.77 5.18 22.59 0.12 -6.65 16 17 C -0.22 -6.58 10.81 22.01 0.24 -6.34 16 18 C 0.00 0.01 10.76 83.48 0.90 0.91 16 19 N -0.39 -14.32 3.09 -515.86 -1.59 -15.92 16 20 C 0.01 0.48 6.35 44.99 0.29 0.76 16 21 C -0.17 -4.37 10.44 30.59 0.32 -4.05 16 22 C -0.14 -2.79 9.96 30.59 0.30 -2.48 16 23 H 0.05 2.13 5.42 -2.39 -0.01 2.11 16 24 H 0.07 2.53 7.50 -2.39 -0.02 2.51 16 25 H 0.09 4.50 5.28 -2.39 -0.01 4.49 16 26 H 0.07 3.77 6.60 -2.39 -0.02 3.75 16 27 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.09 3.17 5.76 -2.39 -0.01 3.16 16 29 H 0.08 3.49 3.57 -17.79 -0.06 3.42 16 30 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 31 H 0.19 7.14 1.98 -23.13 -0.05 7.09 16 32 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.20 3.68 6.88 -2.91 -0.02 3.66 16 34 H 0.11 4.63 6.67 -2.39 -0.02 4.62 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 37 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.13 1.95 6.71 -2.39 -0.02 1.93 16 Total: -1.00 -71.26 289.25 5.33 -65.93 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.99 Total: 32.61 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 5.37 Total: -17.60 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -3.00 Total: -86.49 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.07 Total: -39.70 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -71.26 5.33 -65.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701225455.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.439 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds