Wall clock time and date at job start Mon Mar 30 2020 06:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 C 1.52995 * 109.47244 * 119.99559 * 2 1 3 5 5 N 1.46500 * 109.47080 * 64.99897 * 4 2 1 6 6 C 1.46495 * 120.00469 * 270.00278 * 5 4 2 7 7 C 1.50704 * 109.47354 * 269.99832 * 6 5 4 8 8 H 1.07997 * 119.99363 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00103 * 179.97438 * 7 6 5 10 10 N 1.31506 * 119.99829 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47723 * 60.00110 * 11 9 7 13 13 H 1.48500 * 109.47023 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47091 * 299.99972 * 11 9 7 15 15 C 1.38908 * 119.99533 * 90.00207 * 5 4 2 16 16 C 1.39507 * 120.38197 * 180.02562 * 15 5 4 17 17 C 1.38145 * 118.44674 * 179.97438 * 16 15 5 18 18 C 1.39817 * 119.13799 * 359.97438 * 17 16 15 19 19 C 1.47134 * 119.65295 * 180.02562 * 18 17 16 20 20 O 1.21266 * 119.99416 * 359.97438 * 19 18 17 21 21 N 1.33045 * 120.69485 * 0.02562 * 18 17 16 22 22 C 1.31208 * 121.69374 * 359.97438 * 21 18 17 23 23 H 1.08996 * 109.46921 * 300.00202 * 1 2 3 24 24 H 1.08998 * 109.47031 * 60.00223 * 1 2 3 25 25 H 1.09001 * 109.47046 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47267 * 240.00218 * 2 1 3 27 27 H 1.08998 * 109.46829 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46890 * 299.99737 * 3 2 1 29 29 H 1.08991 * 109.47558 * 59.99661 * 3 2 1 30 30 H 1.08999 * 109.47355 * 305.00636 * 4 2 1 31 31 H 1.08997 * 109.47567 * 185.00326 * 4 2 1 32 32 H 1.09009 * 109.47128 * 29.99957 * 6 5 4 33 33 H 1.09001 * 109.47578 * 149.99295 * 6 5 4 34 34 H 0.97004 * 119.99916 * 179.97438 * 10 9 7 35 35 H 1.08001 * 120.77973 * 359.95414 * 16 15 5 36 36 H 1.07991 * 120.42977 * 179.72627 * 17 16 15 37 37 H 1.07992 * 119.99894 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.60144 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 1.6525 -2.1327 1.1907 6 6 0.3746 -2.5658 1.7613 7 6 0.5716 -2.9407 3.2077 8 1 1.5509 -2.8643 3.6566 9 6 -0.4983 -3.3811 3.9576 10 7 -1.6906 -3.4745 3.4106 11 14 -0.2542 -3.8450 5.7504 12 1 0.2504 -2.6680 6.5022 13 1 -1.5495 -4.2842 6.3289 14 1 0.7307 -4.9524 5.8455 15 6 2.4967 -3.0605 0.5940 16 6 2.1354 -4.4066 0.5333 17 6 3.0050 -5.2947 -0.0696 18 6 4.2093 -4.8175 -0.5956 19 6 5.1435 -5.7534 -1.2407 20 8 4.8673 -6.9319 -1.3137 21 7 4.5195 -3.5260 -0.5189 22 6 3.7162 -2.6566 0.0471 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6054 -0.2617 2.1370 31 1 3.1263 -0.6442 1.2952 32 1 -0.3485 -1.7531 1.6919 33 1 0.0043 -3.4296 1.2093 34 1 -2.4432 -3.7847 3.9381 35 1 1.1981 -4.7465 0.9483 36 1 2.7595 -6.3446 -0.1303 37 1 6.0755 -5.3909 -1.6485 38 1 4.0016 -1.6159 0.0904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703500451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:26 Heat of formation + Delta-G solvation = -6.667908 kcal Electronic energy + Delta-G solvation = -19647.864730 eV Core-core repulsion = 16683.213527 eV Total energy + Delta-G solvation = -2964.651203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04619 -38.48485 -37.16611 -34.47103 -32.82797 -31.64788 -30.02953 -28.00510 -26.92243 -25.81195 -24.30392 -22.63404 -22.08778 -20.42589 -19.75052 -17.16955 -16.79445 -16.56748 -15.88970 -15.15050 -14.73844 -14.54265 -14.39787 -14.12545 -13.92383 -13.42638 -12.98091 -12.82251 -12.66121 -12.41977 -12.16653 -11.91253 -11.65785 -11.50125 -11.27528 -11.04708 -10.83074 -10.52166 -10.39415 -10.30963 -10.13595 -9.76468 -9.44055 -9.06520 -8.98897 -8.64184 -6.86014 -6.22572 -4.34454 1.14237 1.80689 2.80024 3.18960 3.24461 3.27034 3.69096 4.26461 4.39284 4.46573 4.92370 5.04223 5.06588 5.09699 5.22024 5.32679 5.42196 5.59580 5.74153 5.78185 5.81291 5.82207 5.99903 6.03997 6.08187 6.10881 6.23998 6.42060 6.53849 6.59029 6.64798 6.84839 7.02019 7.09567 7.57835 7.62410 7.84919 7.96045 8.02423 8.39157 8.72300 9.33198 10.79814 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.007324 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.238175 B = 3821.913960 C = 5510.019732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.120 3.880 5 N -0.578 5.578 6 C 0.238 3.762 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.066 3.934 10 N -0.891 5.891 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.227 3.773 16 C -0.175 4.175 17 C -0.054 4.054 18 C -0.088 4.088 19 C 0.411 3.589 20 O -0.481 6.481 21 N -0.404 5.404 22 C -0.003 4.003 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.267 0.733 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.755 6.055 -6.535 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.004 4.004 5 N -0.277 5.277 6 C 0.119 3.881 7 C -0.579 4.579 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.529 5.529 11 Si 0.725 3.275 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.112 3.888 16 C -0.204 4.204 17 C -0.076 4.076 18 C -0.225 4.225 19 C 0.270 3.730 20 O -0.354 6.354 21 N -0.115 5.115 22 C -0.172 4.172 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.165 0.835 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.017 5.754 -6.771 11.322 hybrid contribution -0.892 -0.347 1.552 1.823 sum 6.126 5.408 -5.219 9.695 Atomic orbital electron populations 1.21925 0.94680 1.02865 1.01053 1.21582 0.96980 0.95916 0.98944 1.21776 1.00711 0.95859 1.01793 1.21596 0.99490 0.81237 0.98081 1.47301 1.20118 1.04793 1.55491 1.19617 0.78619 0.96609 0.93232 1.21457 0.95416 1.45490 0.95506 0.92186 1.24930 0.94920 0.95085 0.98817 1.69899 0.99881 1.46134 1.37022 0.86558 0.77529 0.79106 0.84328 1.20122 1.21059 1.20044 1.19285 0.90318 0.90515 0.88699 1.21297 1.02663 0.91445 1.04975 1.21936 0.92591 1.00425 0.92614 1.21418 0.98156 0.92133 1.10742 1.23537 0.88866 0.86545 0.74025 1.90488 1.76772 1.19391 1.48744 1.67208 1.31572 1.01971 1.10737 1.22224 0.91584 0.99247 1.04165 0.92570 0.93518 0.91468 0.91252 0.92760 0.92750 0.92537 0.89768 0.91309 0.93506 0.94525 0.92356 0.83477 0.84854 0.88256 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.18 37.16 0.30 -1.80 16 2 C -0.11 -1.49 3.13 -90.62 -0.28 -1.78 16 3 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 4 C 0.12 1.80 4.65 -4.04 -0.02 1.78 16 5 N -0.58 -10.66 2.39 -172.95 -0.41 -11.08 16 6 C 0.24 5.32 3.99 -5.19 -0.02 5.29 16 7 C -0.54 -13.62 9.39 -34.44 -0.32 -13.95 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.11 13.29 55.43 0.74 -23.38 16 11 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 13 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 15 C 0.23 4.15 6.57 -83.67 -0.55 3.60 16 16 C -0.17 -3.31 9.28 -39.14 -0.36 -3.67 16 17 C -0.05 -0.95 9.62 -39.03 -0.38 -1.33 16 18 C -0.09 -1.48 6.73 -83.14 -0.56 -2.04 16 19 C 0.41 6.05 11.66 34.34 0.40 6.45 16 20 O -0.48 -8.35 17.13 5.57 0.10 -8.25 16 21 N -0.40 -6.75 10.29 -9.71 -0.10 -6.85 16 22 C 0.00 -0.04 10.37 -17.30 -0.18 -0.22 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 1.12 5.89 -51.93 -0.31 0.81 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.34 8.07 -51.93 -0.42 0.93 16 31 H 0.07 0.92 6.20 -51.93 -0.32 0.60 16 32 H 0.05 1.08 5.98 -51.92 -0.31 0.77 16 33 H 0.04 0.88 6.22 -51.93 -0.32 0.56 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.15 3.00 6.24 -52.49 -0.33 2.67 16 36 H 0.13 2.21 7.63 -52.49 -0.40 1.81 16 37 H 0.10 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.15 2.13 6.14 -52.49 -0.32 1.81 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -27.68 317.57 -6.88 -34.55 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.23 Total: 2.04 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.72 Total: -7.21 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.22 Total: -41.30 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.10 Total: -8.25 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.68 -6.88 -34.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703500451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.885 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds