Wall clock time and date at job start Mon Mar 30 2020 06:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 C 1.52995 * 109.47244 * 119.99559 * 2 1 3 5 5 N 1.46500 * 109.47080 * 64.99897 * 4 2 1 6 6 C 1.46495 * 120.00469 * 270.00278 * 5 4 2 7 7 C 1.50704 * 109.47354 * 269.99832 * 6 5 4 8 8 H 1.07997 * 119.99363 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00103 * 179.97438 * 7 6 5 10 10 N 1.31506 * 119.99829 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47723 * 60.00110 * 11 9 7 13 13 H 1.48500 * 109.47023 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47091 * 299.99972 * 11 9 7 15 15 C 1.38908 * 119.99533 * 90.00207 * 5 4 2 16 16 C 1.39507 * 120.38197 * 180.02562 * 15 5 4 17 17 C 1.38145 * 118.44674 * 179.97438 * 16 15 5 18 18 C 1.39817 * 119.13799 * 359.97438 * 17 16 15 19 19 C 1.47134 * 119.65295 * 180.02562 * 18 17 16 20 20 O 1.21266 * 119.99416 * 359.97438 * 19 18 17 21 21 N 1.33045 * 120.69485 * 0.02562 * 18 17 16 22 22 C 1.31208 * 121.69374 * 359.97438 * 21 18 17 23 23 H 1.08996 * 109.46921 * 300.00202 * 1 2 3 24 24 H 1.08998 * 109.47031 * 60.00223 * 1 2 3 25 25 H 1.09001 * 109.47046 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47267 * 240.00218 * 2 1 3 27 27 H 1.08998 * 109.46829 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46890 * 299.99737 * 3 2 1 29 29 H 1.08991 * 109.47558 * 59.99661 * 3 2 1 30 30 H 1.08999 * 109.47355 * 305.00636 * 4 2 1 31 31 H 1.08997 * 109.47567 * 185.00326 * 4 2 1 32 32 H 1.09009 * 109.47128 * 29.99957 * 6 5 4 33 33 H 1.09001 * 109.47578 * 149.99295 * 6 5 4 34 34 H 0.97004 * 119.99916 * 179.97438 * 10 9 7 35 35 H 1.08001 * 120.77973 * 359.95414 * 16 15 5 36 36 H 1.07991 * 120.42977 * 179.72627 * 17 16 15 37 37 H 1.07992 * 119.99894 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.60144 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 1.6525 -2.1327 1.1907 6 6 0.3746 -2.5658 1.7613 7 6 0.5716 -2.9407 3.2077 8 1 1.5509 -2.8643 3.6566 9 6 -0.4983 -3.3811 3.9576 10 7 -1.6906 -3.4745 3.4106 11 14 -0.2542 -3.8450 5.7504 12 1 0.2504 -2.6680 6.5022 13 1 -1.5495 -4.2842 6.3289 14 1 0.7307 -4.9524 5.8455 15 6 2.4967 -3.0605 0.5940 16 6 2.1354 -4.4066 0.5333 17 6 3.0050 -5.2947 -0.0696 18 6 4.2093 -4.8175 -0.5956 19 6 5.1435 -5.7534 -1.2407 20 8 4.8673 -6.9319 -1.3137 21 7 4.5195 -3.5260 -0.5189 22 6 3.7162 -2.6566 0.0471 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6054 -0.2617 2.1370 31 1 3.1263 -0.6442 1.2952 32 1 -0.3485 -1.7531 1.6919 33 1 0.0043 -3.4296 1.2093 34 1 -2.4432 -3.7847 3.9381 35 1 1.1981 -4.7465 0.9483 36 1 2.7595 -6.3446 -0.1303 37 1 6.0755 -5.3909 -1.6485 38 1 4.0016 -1.6159 0.0904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703500451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:26 Heat of formation + Delta-G solvation = -21.632737 kcal Electronic energy + Delta-G solvation = -19648.513653 eV Core-core repulsion = 16683.213527 eV Total energy + Delta-G solvation = -2965.300126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41218 -39.78586 -38.46940 -35.81262 -34.66642 -33.02465 -31.51391 -29.59362 -27.98447 -27.14146 -25.91580 -23.99289 -23.59848 -21.72961 -20.95998 -18.69714 -18.50148 -18.00376 -17.25315 -16.68898 -16.13602 -15.93075 -15.73394 -15.40641 -15.22866 -14.80587 -14.43634 -14.21759 -14.06594 -13.88657 -13.47067 -13.15526 -13.09616 -12.97439 -12.74336 -12.53422 -12.34306 -12.12406 -11.83786 -11.59736 -11.54667 -11.05498 -11.04088 -10.64683 -10.47687 -10.34989 -8.48334 -8.05239 -6.40003 -0.18842 0.39909 1.36500 1.38239 1.45252 1.53320 2.22196 2.40365 3.03062 3.04822 3.24502 3.68144 3.87901 3.95381 4.00586 4.06547 4.22351 4.35948 4.53352 4.58449 4.64974 4.70281 4.83564 4.91184 4.98624 5.05248 5.08028 5.12608 5.20596 5.28275 5.32246 5.46655 5.50032 5.57048 5.64861 6.01471 6.23787 6.41175 6.58447 6.74528 7.03458 7.31183 8.79393 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.007324 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.238175 B = 3821.913960 C = 5510.019732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.116 3.884 5 N -0.583 5.583 6 C 0.257 3.743 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.019 3.981 10 N -0.922 5.922 11 Si 0.954 3.046 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.277 1.277 15 C 0.213 3.787 16 C -0.195 4.195 17 C -0.061 4.061 18 C -0.092 4.092 19 C 0.422 3.578 20 O -0.508 6.508 21 N -0.398 5.398 22 C 0.010 3.990 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.036 0.964 33 H 0.011 0.989 34 H 0.267 0.733 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.063 7.300 -7.010 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.195 4.195 4 C -0.006 4.006 5 N -0.284 5.284 6 C 0.136 3.864 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.181 4.181 10 N -0.561 5.561 11 Si 0.780 3.220 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.202 1.202 15 C 0.099 3.901 16 C -0.225 4.225 17 C -0.082 4.082 18 C -0.227 4.227 19 C 0.283 3.717 20 O -0.382 6.382 21 N -0.109 5.109 22 C -0.160 4.160 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 9.355 7.015 -7.258 13.762 hybrid contribution -1.578 -0.759 1.640 2.399 sum 7.777 6.256 -5.618 11.453 Atomic orbital electron populations 1.21885 0.96004 1.00864 1.01575 1.21513 0.95757 0.97592 0.97694 1.21734 1.01771 0.93562 1.02437 1.21822 1.00868 0.79250 0.98672 1.47128 1.19023 1.06274 1.55932 1.19106 0.80388 0.95154 0.91736 1.21730 0.94896 1.44919 0.96940 0.92985 1.25653 0.94756 0.95212 1.02459 1.69999 1.00531 1.47238 1.38338 0.85662 0.77382 0.78833 0.80160 1.19240 1.20677 1.20221 1.19453 0.91167 0.90080 0.89384 1.21201 1.02311 0.92651 1.06316 1.22036 0.93045 1.00447 0.92681 1.21894 0.98022 0.92781 1.10043 1.24059 0.89452 0.85459 0.72751 1.90496 1.77391 1.20613 1.49667 1.67321 1.31219 1.01784 1.10612 1.22621 0.90251 1.00511 1.02587 0.93278 0.91727 0.94688 0.91261 0.91020 0.91598 0.92457 0.91036 0.88863 0.94601 0.97084 0.92364 0.86134 0.84592 0.83330 0.80083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.18 71.98 0.59 -3.55 16 2 C -0.11 -2.59 3.13 -10.79 -0.03 -2.62 16 3 C -0.14 -2.45 9.19 71.98 0.66 -1.79 16 4 C 0.12 3.37 4.65 86.38 0.40 3.77 16 5 N -0.58 -21.76 2.39 -701.10 -1.68 -23.43 16 6 C 0.26 12.00 3.99 85.64 0.34 12.34 16 7 C -0.55 -28.32 9.39 25.60 0.24 -28.08 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 9 C 0.02 1.03 5.46 84.66 0.46 1.49 16 10 N -0.92 -51.38 13.29 21.45 0.28 -51.10 16 11 Si 0.95 42.28 29.54 68.60 2.03 44.30 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 C 0.21 7.76 6.57 38.66 0.25 8.02 16 16 C -0.20 -7.65 9.28 22.55 0.21 -7.44 16 17 C -0.06 -2.15 9.62 22.63 0.22 -1.93 16 18 C -0.09 -2.90 6.73 41.68 0.28 -2.62 16 19 C 0.42 11.24 11.66 70.16 0.82 12.06 16 20 O -0.51 -16.71 17.13 -2.99 -0.05 -16.76 16 21 N -0.40 -12.20 10.29 -184.63 -1.90 -14.10 16 22 C 0.01 0.30 10.37 85.12 0.88 1.18 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.03 1.20 5.89 -2.39 -0.01 1.19 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 31 H 0.09 2.22 6.20 -2.39 -0.01 2.21 16 32 H 0.04 1.75 5.98 -2.38 -0.01 1.73 16 33 H 0.01 0.58 6.22 -2.39 -0.01 0.56 16 34 H 0.27 14.21 8.31 -92.71 -0.77 13.43 16 35 H 0.12 5.31 6.24 -2.91 -0.02 5.29 16 36 H 0.14 4.61 7.63 -2.92 -0.02 4.58 16 37 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.18 4.38 6.14 -2.91 -0.02 4.36 16 Total: -1.00 -60.45 317.57 5.06 -55.39 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 1.05 Total: 14.87 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 5.33 Total: -9.17 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -3.29 Total: -88.63 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.05 Total: -16.76 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -60.45 5.06 -55.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703500451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.760 kcal (2) G-P(sol) polarization free energy of solvation -60.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds